Pregenerated sensors for LINC01297 (Homo sapiens)
Ensembl gene IDs: ENSG00000274827Ensembl transcript IDs: ENST00000621052.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CACACAATCACAACTAGTAAAGCCAGAATTAAAGTCCAGTCGGTCTaGATTCAAAGCCTGTGCTCCTGCCCCAAAGTGACAATTAGTGAC | + |
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Preference number: 5 (lower is better) Translates to: HTITTSKARIKVQSV*IQSLCSCPKVTISD Trigger: GTCACTAATTGTCACTTTGGGGCAGGAGCACAGGCTTTGAATGCAGACCGACTGGACTTTAATTCTGGCTTTACTAGTTGTGATTGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621052.1 |
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| CDS TCA 90 bp | CACTTAAGGAGGCTGTGGCAGAAAGATCCCTTGAGGTCAAACATTTaGGATCAGCCAGAGCAACATAGTGATACCATAATCTCGACAAAA | + |
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Preference number: 5 (lower is better) Translates to: HLRRLWQKDPLRSNI*DQPEQHSDTIISTK Trigger: TTTTGTCGAGATTATGGTATCACTATGTTGCTCTGGCTGATCTCAAATGTTTGACCTCAAGGGATCTTTCTGCCACAGCCTCCTTAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621052.1 |
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| CDS CCA 90 bp | GTAAATGGGCTAAATGCCCCAGTTAAAAGACACAGACTGGCAAGTTaGATAAAGAGTAAAGACCCATTGTTGTCCTGTATTCAGGAGACC | + |
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Preference number: 5 (lower is better) Translates to: VNGLNAPVKRHRLAS*IKSKDPLLSCIQET Trigger: GGTCTCCTGAATACAGGACAACAATGGGTCTTTACTCTTTATCCAACTTGCCAGTCTGTGTCTTTTAACTGGGGCATTTAGCCCATTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000621052.1 |
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| CDS GCA 90 bp | AGTAAAGACCCATTGTTGTCCTGTATTCAGGAGACCCATCTCATGTaGAAAGACACACATAGGCTTAAAATAAAGGGATGGAGGAATATT | + |
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Preference number: 5 (lower is better) Translates to: SKDPLLSCIQETHLM*KDTHRLKIKGWRNI Trigger: AATATTCCTCCATCCCTTTATTTTAAGCCTATGTGTGTCTTTGCACATGAGATGGGTCTCCTGAATACAGGACAACAATGGGTCTTTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621052.1 |
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| CDS TCA 72 bp | GGCTTGCACTCAAGAGTTCAGGGCTGTGGTGAATTATaGTCAAACCACGGCACTTCTGCCTCGATGACAAAG | + |
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Preference number: 6 (lower is better) Translates to: GLHSRVQGCGEL*SNHGTSASMTK Trigger: CTTTGTCATCGAGGCAGAAGTGCCGTGGTTTGATCATAATTCACCACAGCCCTGAACTCTTGAGTGCAAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621052.1 |
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| CDS TCA 72 bp | AGGCTGTGGCAGAAAGATCCCTTGAGGTCAAACATTTaGGATCAGCCAGAGCAACATAGTGATACCATAATC | + |
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Preference number: 6 (lower is better) Translates to: RLWQKDPLRSNI*DQPEQHSDTII Trigger: GATTATGGTATCACTATGTTGCTCTGGCTGATCTCAAATGTTTGACCTCAAGGGATCTTTCTGCCACAGCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621052.1 |
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| CDS GCA 72 bp | CCATTGTTGTCCTGTATTCAGGAGACCCATCTCATGTaGAAAGACACACATAGGCTTAAAATAAAGGGATGG | + |
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Preference number: 6 (lower is better) Translates to: PLLSCIQETHLM*KDTHRLKIKGW Trigger: CCATCCCTTTATTTTAAGCCTATGTGTGTCTTTGCACATGAGATGGGTCTCCTGAATACAGGACAACAATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621052.1 |
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| CDS GCA 72 bp | TTCAGCATAGGCCTCAAAGGGTTCCAAATATCCACTTaGAGATTCTACAAAAAGACGGTTTCCAAACTGCTC | + |
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Preference number: 6 (lower is better) Translates to: FSIGLKGFQIST*RFYKKTVSKLL Trigger: GAGCAGTTTGGAAACCGTCTTTTTGTAGAATCTGCAAGTGGATATTTGGAACCCTTTGAGGCCTATGCTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000621052.1 |
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| CDS CAA 72 bp | AGACTGGCAAGTTGGATAAAGAGTAAAGACCCATTGTaGTCCTGTATTCAGGAGACCCATCTCATGTGCAAA | + |
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Preference number: 6 (lower is better) Translates to: RLASWIKSKDPL*SCIQETHLMCK Trigger: TTTGCACATGAGATGGGTCTCCTGAATACAGGACAACAATGGGTCTTTACTCTTTATCCAACTTGCCAGTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621052.1 |
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| CDS CAA 90 bp | AAAAGACACAGACTGGCAAGTTGGATAAAGAGTAAAGACCCATTGTaGTCCTGTATTCAGGAGACCCATCTCATGTGCAAAGACACACAT | + |
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Preference number: 6 (lower is better) Translates to: KRHRLASWIKSKDPL*SCIQETHLMCKDTH Trigger: ATGTGTGTCTTTGCACATGAGATGGGTCTCCTGAATACAGGACAACAATGGGTCTTTACTCTTTATCCAACTTGCCAGTCTGTGTCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621052.1 |
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| CDS CAA 72 bp | TTTCAGCATAGGCCTCAAAGGGTTCCAAATATCCACTaGCAGATTCTACAAAAAGACGGTTTCCAAACTGCT | + |
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Preference number: 6 (lower is better) Translates to: FQHRPQRVPNIH*QILQKDGFQTA Trigger: AGCAGTTTGGAAACCGTCTTTTTGTAGAATCTGCAAGTGGATATTTGGAACCCTTTGAGGCCTATGCTGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000621052.1 |
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| CDS CAA 72 bp | ACAGATAAAGAAACAGGCACAGAGGGTTTAAGTAACTaGCACAAGGTCACACAATCACAACTAGTAAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: TDKETGTEGLSN*HKVTQSQLVKP Trigger: TGGCTTTACTAGTTGTGATTGTGTGACCTTGTGCAAGTTACTTAAACCCTCTGTGCCTGTTTCTTTATCTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621052.1 |
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