Pregenerated sensors for LINC01293 (Homo sapiens)
Ensembl gene IDs: ENSG00000230836Ensembl transcript IDs: ENST00000453951.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ATGAAGGGACTCATTACATACGGTCTCTGTGCTGGCTTCCTCCTGTaGTTCACTCTTGTCTCATTACCTGGGGTAAGAACCCTCTTGCCA | + |
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Preference number: 5 (lower is better) Translates to: MKGLITYGLCAGFLL*FTLVSLPGVRTLLP Trigger: TGGCAAGAGGGTTCTTACCCCAGGTAATGAGACAAGAGTGAACCACAGGAGGAAGCCAGCACAGAGACCGTATGTAATGAGTCCCTTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS CCA 90 bp | TCAAGGATCACAAATATGATTGCCTCCACTAATCGACAGATACAATaGTTCCAGTCCACTAGACCTTCCTCCCATAGCCCTGGGGATACC | + |
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Preference number: 5 (lower is better) Translates to: SRITNMIASTNRQIQ*FQSTRPSSHSPGDT Trigger: GGTATCCCCAGGGCTATGGGAGGAAGGTCTAGTGGACTGGAACCATTGTATCTGTCGATTAGTGGAGGCAATCATATTTGTGATCCTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS CCA 90 bp | GGGTTGCTGAAAAGTCCTCTTCAGGGAAAAGGTTTCCTCTTTATTTaGTCAAGGGCCCTCTTCACAATCTTCCCATTTGTGGCTCCACTT | + |
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Preference number: 5 (lower is better) Translates to: GLLKSPLQGKGFLFI*SRALFTIFPFVAPL Trigger: AAGTGGAGCCACAAATGGGAAGATTGTGAAGAGGGCCCTTGACCAAATAAAGAGGAAACCTTTTCCCTGAAGAGGACTTTTCAGCAACCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS TCA 90 bp | CAAGTTTATAGTCTTACTAGACCATTAGCTCAAGGATCACAAATATaGTTGCCTCCACTAATCGACAGATACAATGGTTCCAGTCCACTA | + |
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Preference number: 5 (lower is better) Translates to: QVYSLTRPLAQGSQI*LPPLIDRYNGSSPL Trigger: TAGTGGACTGGAACCATTGTATCTGTCGATTAGTGGAGGCAATCATATTTGTGATCCTTGAGCTAATGGTCTAGTAAGACTATAAACTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS CAA 72 bp | TCAGCGGTGAGAGAACTCTATCCGTCCATCGTTATCTaGAAGCCCCCAGCGGGGCTGTCTTTCAGCCTCACC | + |
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Preference number: 6 (lower is better) Translates to: SAVRELYPSIVI*KPPAGLSFSLT Trigger: GGTGAGGCTGAAAGACAGCCCCGCTGGGGGCTTCAAGATAACGATGGACGGATAGAGTTCTCTCACCGCTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS CAA 72 bp | GTAGCCACTTCTGACTCCTGGACGTACACCGTGTGTTaGAGTGGGTGTGTGTGTGCATGCGCACGTGTGTGT | + |
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Preference number: 6 (lower is better) Translates to: VATSDSWTYTVC*SGCVCACARVC Trigger: ACACACACGTGCGCATGCACACACACACCCACTCAAACACACGGTGTACGTCCAGGAGTCAGAAGTGGCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS CAA 90 bp | TCCATCTCTGTAGCCACTTCTGACTCCTGGACGTACACCGTGTGTTaGAGTGGGTGTGTGTGTGCATGCGCACGTGTGTGTATGGGTGTG | + |
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Preference number: 6 (lower is better) Translates to: SISVATSDSWTYTVC*SGCVCACARVCMGV Trigger: CACACCCATACACACACGTGCGCATGCACACACACACCCACTCAAACACACGGTGTACGTCCAGGAGTCAGAAGTGGCTACAGAGATGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS CAA 90 bp | AGGAGATATTCAGCGGTGAGAGAACTCTATCCGTCCATCGTTATCTaGAAGCCCCCAGCGGGGCTGTCTTTCAGCCTCACCTCAAGTCAG | + |
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Preference number: 6 (lower is better) Translates to: RRYSAVRELYPSIVI*KPPAGLSFSLTSSQ Trigger: CTGACTTGAGGTGAGGCTGAAAGACAGCCCCGCTGGGGGCTTCAAGATAACGATGGACGGATAGAGTTCTCTCACCGCTGAATATCTCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS CCA 72 bp | AATGAAGACTCCATCTCTGTAGCCACTTCTGACTCCTaGACGTACACCGTGTGTTTGAGTGGGTGTGTGTGT | + |
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Preference number: 6 (lower is better) Translates to: NEDSISVATSDS*TYTVCLSGCVC Trigger: ACACACACACCCACTCAAACACACGGTGTACGTCCAGGAGTCAGAAGTGGCTACAGAGATGGAGTCTTCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS CCA 72 bp | CTCATTACATACGGTCTCTGTGCTGGCTTCCTCCTGTaGTTCACTCTTGTCTCATTACCTGGGGTAAGAACC | + |
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Preference number: 6 (lower is better) Translates to: LITYGLCAGFLL*FTLVSLPGVRT Trigger: GGTTCTTACCCCAGGTAATGAGACAAGAGTGAACCACAGGAGGAAGCCAGCACAGAGACCGTATGTAATGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS CAA 90 bp | TGGGTTGCTGAAAAGTCCTCTTCAGGGAAAAGGTTTCCTCTTTATTaGGTCAAGGGCCCTCTTCACAATCTTCCCATTTGTGGCTCCACT | + |
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Preference number: 6 (lower is better) Translates to: WVAEKSSSGKRFPLY*VKGPLHNLPICGST Trigger: AGTGGAGCCACAAATGGGAAGATTGTGAAGAGGGCCCTTGACCAAATAAAGAGGAAACCTTTTCCCTGAAGAGGACTTTTCAGCAACCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS CCA 72 bp | TTTGGTCAAGGGCCCTCTTCACAATCTTCCCATTTGTaGCTCCACTTTGCTGTCCCCTTAATAATGAAGACT | + |
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Preference number: 6 (lower is better) Translates to: FGQGPSSQSSHL*LHFAVPLIMKT Trigger: AGTCTTCATTATTAAGGGGACAGCAAAGTGGAGCCACAAATGGGAAGATTGTGAAGAGGGCCCTTGACCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS CCA 72 bp | ACAAATATGATTGCCTCCACTAATCGACAGATACAATaGTTCCAGTCCACTAGACCTTCCTCCCATAGCCCT | + |
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Preference number: 6 (lower is better) Translates to: TNMIASTNRQIQ*FQSTRPSSHSP Trigger: AGGGCTATGGGAGGAAGGTCTAGTGGACTGGAACCATTGTATCTGTCGATTAGTGGAGGCAATCATATTTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS CAA 72 bp | GATGCTGCAGGAAGTACTGGTAGTTCAGATATCTCCTaGGTCGATGTAGACATTATTTTCCTAGGCCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: DAAGSTGSSDIS*VDVDIIFLGLR Trigger: CCTCAGGCCTAGGAAAATAATGTCTACATCGACCAAGGAGATATCTGAACTACCAGTACTTCCTGCAGCATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS CAA 72 bp | TTATTTGGTCAAGGGCCCTCTTCACAATCTTCCCATTaGTGGCTCCACTTTGCTGTCCCCTTAATAATGAAG | + |
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Preference number: 6 (lower is better) Translates to: LFGQGPSSQSSH*WLHFAVPLIMK Trigger: CTTCATTATTAAGGGGACAGCAAAGTGGAGCCACAAATGGGAAGATTGTGAAGAGGGCCCTTGACCAAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS CAA 90 bp | CTCCTGTGGTTCACTCTTGTCTCATTACCTGGGGTAAGAACCCTCTaGCCAGCTTTAATTATGAACAAGTTTATAGTCTTACTAGACCAT | + |
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Preference number: 6 (lower is better) Translates to: LLWFTLVSLPGVRTL*PALIMNKFIVLLDH Trigger: ATGGTCTAGTAAGACTATAAACTTGTTCATAATTAAAGCTGGCAAGAGGGTTCTTACCCCAGGTAATGAGACAAGAGTGAACCACAGGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS TCA 72 bp | AGTCTTACTAGACCATTAGCTCAAGGATCACAAATATaGTTGCCTCCACTAATCGACAGATACAATGGTTCC | + |
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Preference number: 6 (lower is better) Translates to: SLTRPLAQGSQI*LPPLIDRYNGS Trigger: GGAACCATTGTATCTGTCGATTAGTGGAGGCAATCATATTTGTGATCCTTGAGCTAATGGTCTAGTAAGACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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| CDS CAA 72 bp | TTCACTCTTGTCTCATTACCTGGGGTAAGAACCCTCTaGCCAGCTTTAATTATGAACAAGTTTATAGTCTTA | + |
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Preference number: 6 (lower is better) Translates to: FTLVSLPGVRTL*PALIMNKFIVL Trigger: TAAGACTATAAACTTGTTCATAATTAAAGCTGGCAAGAGGGTTCTTACCCCAGGTAATGAGACAAGAGTGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453951.1 |
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