Pregenerated sensors for LINC01288 (Homo sapiens)

Ensembl gene IDs: ENSG00000254344

Ensembl transcript IDs: ENST00000519189.2, ENST00000648617.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GAGAGGGAGGGAGAGGAAAACCTCAGCAATGGAGAAAGCACGGAGTaGGTAGAGCATTCCAGAAGTAGCAGCCCAGCATCTAGTGTGGTG	+
Preference number: 5 (lower is better) Translates to: EREGEENLSNGESTE*VEHSRSSSPASSVV Trigger: CACCACACTAGATGCTGGGCTGCTACTTCTGGAATGCTCTACTCACTCCGTGCTTTCTCCATTGCTGAGGTTTTCCTCTCCCTCCCTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519189.2
CDS CCA 90 bp	TCATTTCTCTCTCTCCTTCTATGTTTGCTCATGCAGAAGATGAATTaGTTGCACTCAGTGATGTCTAAAAATTCCTTTCAGCTCCTTCTC	+
Preference number: 5 (lower is better) Translates to: SFLSLLLCLLMQKMN*LHSVMSKNSFQLLL Trigger: GAGAAGGAGCTGAAAGGAATTTTTAGACATCACTGAGTGCAACCAATTCATCTTCTGCATGAGCAAACATAGAAGGAGAGAGAGAAATGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000519189.2 ENST00000648617.1
CDS CAA 72 bp	GCGAACCTTCAAATGCCAGAAAGCACAGGCAGTCTCTaGGATCCTTGCGTCTTGGTGCAAAGTCCTTCACAC	+
Preference number: 6 (lower is better) Translates to: ANLQMPESTGSL*DPCVLVQSPSH Trigger: GTGTGAAGGACTTTGCACCAAGACGCAAGGATCCAAGAGACTGCCTGTGCTTTCTGGCATTTGAAGGTTCGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000519189.2
CDS CCA 72 bp	CGAACCTTCAAATGCCAGAAAGCACAGGCAGTCTCTTaGATCCTTGCGTCTTGGTGCAAAGTCCTTCACACT	+
Preference number: 6 (lower is better) Translates to: RTFKCQKAQAVS*ILASWCKVLHT Trigger: AGTGTGAAGGACTTTGCACCAAGACGCAAGGATCCAAGAGACTGCCTGTGCTTTCTGGCATTTGAAGGTTCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000519189.2
CDS CCA 72 bp	CAAACTGAATTCAGGCATTTGCAGGAAGCTGGGCTCTaGAAGATCAGGTGTGTAGCTGTGGTTGCAGAATCT	+
Preference number: 6 (lower is better) Translates to: QTEFRHLQEAGL*KIRCVAVVAES Trigger: AGATTCTGCAACCACAGCTACACACCTGATCTTCCAGAGCCCAGCTTCCTGCAAATGCCTGAATTCAGTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648617.1
CDS GCA 72 bp	TTTTCAAGGATTGCCATTAAAATGCGAACCTTCAAATaGCAGAAAGCACAGGCAGTCTCTTGGATCCTTGCG	+
Preference number: 6 (lower is better) Translates to: FSRIAIKMRTFK*QKAQAVSWILA Trigger: CGCAAGGATCCAAGAGACTGCCTGTGCTTTCTGGCATTTGAAGGTTCGCATTTTAATGGCAATCCTTGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000519189.2
CDS CCA 72 bp	TCTCTCCTTCTATGTTTGCTCATGCAGAAGATGAATTaGTTGCACTCAGTGATGTCTAAAAATTCCTTTCAG	+
Preference number: 6 (lower is better) Translates to: SLLLCLLMQKMN*LHSVMSKNSFQ Trigger: CTGAAAGGAATTTTTAGACATCACTGAGTGCAACCAATTCATCTTCTGCATGAGCAAACATAGAAGGAGAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000519189.2 ENST00000648617.1

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