Pregenerated sensors for LINC01280 (Homo sapiens)
Ensembl gene IDs: ENSG00000224391Ensembl transcript IDs: ENST00000449783.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGTTCACCCAGGGGCTGTAGGAAGTACTGCCAAGAAGTGGAGGAGTaGAGCATCTGTCCGTGTGGGACGTGGGTACAGTTCCAGGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: SSPRGCRKYCQEVEE*SICPCGTWVQFQGR Trigger: CCTCCCCTGGAACTGTACCCACGTCCCACACGGACAGATGCTTCACTCCTCCACTTCTTGGCAGTACTTCCTACAGCCCCTGGGTGAACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 90 bp | AGTCTCAGCCACGGTCATGCCCTCTGGAGGTCGATCACAGCCAGCTaGAGAAGTTCACCCAGGGGCTGTAGGAAGTACTGCCAAGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: SLSHGHALWRSITAS*RSSPRGCRKYCQEV Trigger: CACTTCTTGGCAGTACTTCCTACAGCCCCTGGGTGAACTTCTCCAGCTGGCTGTGATCGACCTCCAGAGGGCATGACCGTGGCTGAGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 90 bp | AGCTGGGAACATGAAAAGCTGAGTCTCAGCCACGGTCATGCCCTCTaGAGGTCGATCACAGCCAGCTGGAGAAGTTCACCCAGGGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: SWEHEKLSLSHGHAL*RSITASWRSSPRGC Trigger: ACAGCCCCTGGGTGAACTTCTCCAGCTGGCTGTGATCGACCTCCAGAGGGCATGACCGTGGCTGAGACTCAGCTTTTCATGTTCCCAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 90 bp | GCTGGAGAAGTTCACCCAGGGGCTGTAGGAAGTACTGCCAAGAAGTaGAGGAGTGAAGCATCTGTCCGTGTGGGACGTGGGTACAGTTCC | + |
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Preference number: 5 (lower is better) Translates to: AGEVHPGAVGSTAKK*RSEASVRVGRGYSS Trigger: GGAACTGTACCCACGTCCCACACGGACAGATGCTTCACTCCTCCACTTCTTGGCAGTACTTCCTACAGCCCCTGGGTGAACTTCTCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS GCA 90 bp | TCCTTTCTCCACTTTCCTCTCCCATCCCCCATGGCTGAGACAGGTTaGAGCAGCTCATCCATTGGGCATCTTTGGGCATCTCTGGGCATG | + |
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Preference number: 5 (lower is better) Translates to: SFLHFPLPSPMAETG*SSSSIGHLWASLGM Trigger: CATGCCCAGAGATGCCCAAAGATGCCCAATGGATGAGCTGCTGCAACCTGTCTCAGCCATGGGGGATGGGAGAGGAAAGTGGAGAAAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 90 bp | CAGCAAGGTGGAGCACTGTGTGCCAAGACTGGGAGCCAGGAAACCTaGGCGGCTTGGTGTTCTGAATTTCTCCATGTCCTTAGAAAGTGG | + |
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Preference number: 5 (lower is better) Translates to: QQGGALCAKTGSQET*AAWCSEFLHVLRKW Trigger: CCACTTTCTAAGGACATGGAGAAATTCAGAACACCAAGCCGCCCAGGTTTCCTGGCTCCCAGTCTTGGCACACAGTGCTCCACCTTGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 90 bp | CCCATGGCTGAGACAGGTTGCAGCAGCTCATCCATTGGGCATCTTTaGGCATCTCTGGGCATGTCTTCACTGAGACACCAGCTCCATTTT | + |
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Preference number: 5 (lower is better) Translates to: PMAETGCSSSSIGHL*ASLGMSSLRHQLHF Trigger: AAAATGGAGCTGGTGTCTCAGTGAAGACATGCCCAGAGATGCCCAAAGATGCCCAATGGATGAGCTGCTGCAACCTGTCTCAGCCATGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 90 bp | GGTTTCTTATGGCCACGTACCTCCTGCAGCTTAGCCTCTGGCAGATaGAAGACTGAAGAGCTTCTCCCATCAGAGGTGGCTGAATTACCC | + |
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Preference number: 5 (lower is better) Translates to: GFLWPRTSCSLASGR*KTEELLPSEVAELP Trigger: GGGTAATTCAGCCACCTCTGATGGGAGAAGCTCTTCAGTCTTCCATCTGCCAGAGGCTAAGCTGCAGGAGGTACGTGGCCATAAGAAACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS TCA 90 bp | GCTCATCCATTGGGCATCTTTGGGCATCTCTGGGCATGTCTTCACTaGGACACCAGCTCCATTTTCTTCCACTCCGATCTTCCTCGATTC | + |
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Preference number: 5 (lower is better) Translates to: AHPLGIFGHLWACLH*DTSSIFFHSDLPRF Trigger: GAATCGAGGAAGATCGGAGTGGAAGAAAATGGAGCTGGTGTCTCAGTGAAGACATGCCCAGAGATGCCCAAAGATGCCCAATGGATGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 90 bp | GCTCAATATATGTTGAAGTGCTGGCCATGGGGTCTGTCATCTCTCTaGGGGAACCAACACTCAGGAAGGATGCGTCCACATTTCTCCTTA | + |
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Preference number: 5 (lower is better) Translates to: AQYMLKCWPWGLSSL*GNQHSGRMRPHFSL Trigger: TAAGGAGAAATGTGGACGCATCCTTCCTGAGTGTTGGTTCCCCCAGAGAGATGACAGACCCCATGGCCAGCACTTCAACATATATTGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS GCA 72 bp | AGGTGGCTGAATTACCCAGCAAGGTGGAGCACTGTGTaGCAAGACTGGGAGCCAGGAAACCTGGGCGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: RWLNYPARWSTV*QDWEPGNLGGL Trigger: CAAGCCGCCCAGGTTTCCTGGCTCCCAGTCTTGGCACACAGTGCTCCACCTTGCTGGGTAATTCAGCCACCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 72 bp | CTGCCAAGAAGTGGAGGAGTGAAGCATCTGTCCGTGTaGGACGTGGGTACAGTTCCAGGGGAGGGTGTCACG | + |
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Preference number: 6 (lower is better) Translates to: LPRSGGVKHLSV*DVGTVPGEGVT Trigger: CGTGACACCCTCCCCTGGAACTGTACCCACGTCCCACACGGACAGATGCTTCACTCCTCCACTTCTTGGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 72 bp | CACGGTCATGCCCTCTGGAGGTCGATCACAGCCAGCTaGAGAAGTTCACCCAGGGGCTGTAGGAAGTACTGC | + |
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Preference number: 6 (lower is better) Translates to: HGHALWRSITAS*RSSPRGCRKYC Trigger: GCAGTACTTCCTACAGCCCCTGGGTGAACTTCTCCAGCTGGCTGTGATCGACCTCCAGAGGGCATGACCGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 72 bp | CATGAAAAGCTGAGTCTCAGCCACGGTCATGCCCTCTaGAGGTCGATCACAGCCAGCTGGAGAAGTTCACCC | + |
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Preference number: 6 (lower is better) Translates to: HEKLSLSHGHAL*RSITASWRSSP Trigger: GGGTGAACTTCTCCAGCTGGCTGTGATCGACCTCCAGAGGGCATGACCGTGGCTGAGACTCAGCTTTTCATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS TCA 72 bp | AGGGGCTGTAGGAAGTACTGCCAAGAAGTGGAGGAGTaGAGCATCTGTCCGTGTGGGACGTGGGTACAGTTC | + |
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Preference number: 6 (lower is better) Translates to: RGCRKYCQEVEE*SICPCGTWVQF Trigger: GAACTGTACCCACGTCCCACACGGACAGATGCTTCACTCCTCCACTTCTTGGCAGTACTTCCTACAGCCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 72 bp | GGAGCACTGTGTGCCAAGACTGGGAGCCAGGAAACCTaGGCGGCTTGGTGTTCTGAATTTCTCCATGTCCTT | + |
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Preference number: 6 (lower is better) Translates to: GALCAKTGSQET*AAWCSEFLHVL Trigger: AAGGACATGGAGAAATTCAGAACACCAAGCCGCCCAGGTTTCCTGGCTCCCAGTCTTGGCACACAGTGCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 72 bp | TTCTCCCATCAGAGGTGGCTGAATTACCCAGCAAGGTaGAGCACTGTGTGCCAAGACTGGGAGCCAGGAAAC | + |
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Preference number: 6 (lower is better) Translates to: FSHQRWLNYPAR*STVCQDWEPGN Trigger: GTTTCCTGGCTCCCAGTCTTGGCACACAGTGCTCCACCTTGCTGGGTAATTCAGCCACCTCTGATGGGAGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 72 bp | GCAGATGGAAGACTGAAGAGCTTCTCCCATCAGAGGTaGCTGAATTACCCAGCAAGGTGGAGCACTGTGTGC | + |
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Preference number: 6 (lower is better) Translates to: ADGRLKSFSHQR*LNYPARWSTVC Trigger: GCACACAGTGCTCCACCTTGCTGGGTAATTCAGCCACCTCTGATGGGAGAAGCTCTTCAGTCTTCCATCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 72 bp | ATGTTGAAGTGCTGGCCATGGGGTCTGTCATCTCTCTaGGGGAACCAACACTCAGGAAGGATGCGTCCACAT | + |
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Preference number: 6 (lower is better) Translates to: MLKCWPWGLSSL*GNQHSGRMRPH Trigger: ATGTGGACGCATCCTTCCTGAGTGTTGGTTCCCCCAGAGAGATGACAGACCCCATGGCCAGCACTTCAACAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS TCA 72 bp | TTGGGCATCTTTGGGCATCTCTGGGCATGTCTTCACTaGGACACCAGCTCCATTTTCTTCCACTCCGATCTT | + |
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Preference number: 6 (lower is better) Translates to: LGIFGHLWACLH*DTSSIFFHSDL Trigger: AAGATCGGAGTGGAAGAAAATGGAGCTGGTGTCTCAGTGAAGACATGCCCAGAGATGCCCAAAGATGCCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 72 bp | ATTCCCACAGCTCAATATATGTTGAAGTGCTGGCCATaGGGTCTGTCATCTCTCTGGGGGAACCAACACTCA | + |
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Preference number: 6 (lower is better) Translates to: IPTAQYMLKCWP*GLSSLWGNQHS Trigger: TGAGTGTTGGTTCCCCCAGAGAGATGACAGACCCCATGGCCAGCACTTCAACATATATTGAGCTGTGGGAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 72 bp | TTAGAAAGTGGCTTTACTTCTCTTCCTACATCTTCCTaGGTCCCCATTAGGGAGGCAGAACTTCCCATGTCC | + |
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Preference number: 6 (lower is better) Translates to: LESGFTSLPTSS*VPIREAELPMS Trigger: GGACATGGGAAGTTCTGCCTCCCTAATGGGGACCCAGGAAGATGTAGGAAGAGAAGTAAAGCCACTTTCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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| CDS CCA 72 bp | ATTCTAATTCCCACAGCTCAATATATGTTGAAGTGCTaGCCATGGGGTCTGTCATCTCTCTGGGGGAACCAA | + |
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Preference number: 6 (lower is better) Translates to: ILIPTAQYMLKC*PWGLSSLWGNQ Trigger: TTGGTTCCCCCAGAGAGATGACAGACCCCATGGCCAGCACTTCAACATATATTGAGCTGTGGGAATTAGAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000449783.1 |
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