Pregenerated sensors for LINC01249 (Homo sapiens)
Ensembl gene IDs: ENSG00000231532Ensembl transcript IDs: ENST00000412134.6, ENST00000421212.2, ENST00000432314.5, ENST00000659398.1
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCGCAGGTCAGTaGGTGCGCGCACCAGGGGCGAGCCGAAGCAGGGTGAGGCATTGC | + |
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Preference number: 5 (lower is better) Translates to: RVHLTRECQTVGAGQ*VRAPGASRSRVRHC Trigger: GCAATGCCTCACCCTGCTTCGGCTCGCCCCTGGTGCGCGCACCCACTGACCTGCGCCCACTGTCTGGCACTCCCTAGTGAGATGAACCCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432314.5 |
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| CDS GCA 90 bp | GAAGGCTTTACTGCGCAGGAGCAGTACCTGCTGGGAGAAGGGACTTaGTGGAAGACGTGGGTAGAGCCGGTCCATTGGTCCAGTGCACCA | + |
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Preference number: 5 (lower is better) Translates to: EGFTAQEQYLLGEGT*WKTWVEPVHWSSAP Trigger: TGGTGCACTGGACCAATGGACCGGCTCTACCCACGTCTTCCAGCAAGTCCCTTCTCCCAGCAGGTACTGCTCCTGCGCAGTAAAGCCTTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412134.6 |
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| CDS GCA 90 bp | GGAAGAACCAGGCTGAGACCCCCGCCTCTTTGGAGAAGGCTTTACTaGGCAGGAGCAGTACCTGCTGGGAGAAGGGACTTGCTGGAAGAC | + |
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Preference number: 5 (lower is better) Translates to: GRTRLRPPPLWRRLY*AGAVPAGRRDLLED Trigger: GTCTTCCAGCAAGTCCCTTCTCCCAGCAGGTACTGCTCCTGCGCAGTAAAGCCTTCTCCAAAGAGGCGGGGGTCTCAGCCTGGTTCTTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000412134.6 |
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| CDS TCA 90 bp | GGCAATGCATTTTTGGTGCAGGTCACCCTCGAGTGCTTTTTGGTGTaGGCAGCACATGGACAAAGCTGCCGAAGGGCAGGAGTCCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: GNAFLVQVTLECFLV*AAHGQSCRRAGVPG Trigger: CCCAGGGACTCCTGCCCTTCGGCAGCTTTGTCCATGTGCTGCTCACACCAAAAAGCACTCGAGGGTGACCTGCACCAAAAATGCATTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000659398.1 |
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| CDS TCA 90 bp | ATCCCCAGGTCTCACTGGTACTTGTTTTCCCTGACGGTCTCCAGCTaGGAGCTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCCTTTGTG | + |
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Preference number: 5 (lower is better) Translates to: IPRSHWYLFSLTVSS*ELCVCVCVCARAFV Trigger: CACAAAGGCGCGCGCACACACACACACACACACACACAGCTCTCAGCTGGAGACCGTCAGGGAAAACAAGTACCAGTGAGACCTGGGGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS CCA 90 bp | CACATGGACAAAGCTGCCGAAGGGCAGGAGTCCCTGGGTTTCTCTTaGGGGCCGGTTGCTCTCGGAAGTTCCTCTCCTTCACTCTCTAAA | + |
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Preference number: 5 (lower is better) Translates to: HMDKAAEGQESLGFS*GPVALGSSSPSLSK Trigger: TTTAGAGAGTGAAGGAGAGGAACTTCCGAGAGCAACCGGCCCCCAAGAGAAACCCAGGGACTCCTGCCCTTCGGCAGCTTTGTCCATGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000659398.1 |
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| CDS CCA 90 bp | TTTGGTGCAGGTCACCCTCGAGTGCTTTTTGGTGTGAGCAGCACATaGACAAAGCTGCCGAAGGGCAGGAGTCCCTGGGTTTCTCTTGGG | + |
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Preference number: 5 (lower is better) Translates to: FGAGHPRVLFGVSST*TKLPKGRSPWVSLG Trigger: CCCAAGAGAAACCCAGGGACTCCTGCCCTTCGGCAGCTTTGTCCATGTGCTGCTCACACCAAAAAGCACTCGAGGGTGACCTGCACCAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000659398.1 |
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| CDS CCA 90 bp | ACTACGGCAATGCATTTTTGGTGCAGGTCACCCTCGAGTGCTTTTTaGTGTGAGCAGCACATGGACAAAGCTGCCGAAGGGCAGGAGTCC | + |
|
Preference number: 5 (lower is better) Translates to: TTAMHFWCRSPSSAF*CEQHMDKAAEGQES Trigger: GGACTCCTGCCCTTCGGCAGCTTTGTCCATGTGCTGCTCACACCAAAAAGCACTCGAGGGTGACCTGCACCAAAAATGCATTGCCGTAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000659398.1 |
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| CDS TCA 90 bp | AAAGCTGCATTAAGGAGTAGTCAGGTGCTGAGGCTGGCTGGCTTCTaGCAGCTTTCAGCCGCTTTGATCAGACACCTATCAGCACAAGCA | + |
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Preference number: 5 (lower is better) Translates to: KAALRSSQVLRLAGF*QLSAALIRHLSAQA Trigger: TGCTTGTGCTGATAGGTGTCTGATCAAAGCGGCTGAAAGCTGTCAGAAGCCAGCCAGCCTCAGCACCTGACTACTCCTTAATGCAGCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS GCA 90 bp | AGATCTCTTGTCTGCAGATGTTTTATCCAGGGCAGTTTACGTTGTTaGTTTTGGGCCGCAGTAGGTGAGTCAGCATGGGAAGGACACATC | + |
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Preference number: 5 (lower is better) Translates to: RSLVCRCFIQGSLRC*FWAAVGESAWEGHI Trigger: GATGTGTCCTTCCCATGCTGACTCACCTACTGCGGCCCAAAAGCAACAACGTAAACTGCCCTGGATAAAACATCTGCAGACAAGAGATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS CCA 90 bp | CTTGTCTGCAGATGTTTTATCCAGGGCAGTTTACGTTGTTGCTTTTaGGCCGCAGTAGGTGAGTCAGCATGGGAAGGACACATCCCTTTA | + |
|
Preference number: 5 (lower is better) Translates to: LVCRCFIQGSLRCCF*AAVGESAWEGHIPL Trigger: TAAAGGGATGTGTCCTTCCCATGCTGACTCACCTACTGCGGCCCAAAAGCAACAACGTAAACTGCCCTGGATAAAACATCTGCAGACAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS CCA 90 bp | ACACACACACACACACACACACACACACACACACACACCATACTCTaGACAGAATTAGTCCACATTTCCTATAGGTGTCAGACTGCAAAA | + |
|
Preference number: 5 (lower is better) Translates to: THTHTHTHTHTHTIL*TELVHISYRCQTAK Trigger: TTTTGCAGTCTGACACCTATAGGAAATGTGGACTAATTCTGTCCAGAGTATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS CCA 90 bp | GTATATATTTGGTACGTCCATGAAGGTCTGAGCTCCTTGAAGATGTaGCCAAATCTTATTCATCTCTGTAAGTCCAACTTAGCACAGTGC | + |
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Preference number: 5 (lower is better) Translates to: VYIWYVHEGLSSLKM*PNLIHLCKSNLAQC Trigger: GCACTGTGCTAAGTTGGACTTACAGAGATGAATAAGATTTGGCCACATCTTCAAGGAGCTCAGACCTTCATGGACGTACCAAATATATAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000432314.5 |
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| CDS GCA 90 bp | ACTATTTACACTGGAGAAAACCAAAACCACAGCATCAGTAATTTATaGAAAGTCCCTCAGCACTTAAGAACCTGTATCGGATACCTCTGT | + |
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Preference number: 5 (lower is better) Translates to: TIYTGENQNHSISNL*KVPQHLRTCIGYLC Trigger: ACAGAGGTATCCGATACAGGTTCTTAAGTGCTGAGGGACTTTGCATAAATTACTGATGCTGTGGTTTTGGTTTTCTCCAGTGTAAATAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659398.1 |
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| CDS CCA 90 bp | ACAGCTCTCATTATGATAAGCAGTAGAGTTAGTTCTGTATATATTTaGTACGTCCATGAAGGTCTGAGCTCCTTGAAGATGTGGCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: TALIMISSRVSSVYI*YVHEGLSSLKMWPN Trigger: ATTTGGCCACATCTTCAAGGAGCTCAGACCTTCATGGACGTACCAAATATATACAGAACTAACTCTACTGCTTATCATAATGAGAGCTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000432314.5 |
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| CDS GCA 90 bp | ATGTGGCCAAATCTTATTCATCTCTGTAAGTCCAACTTAGCACAGTaGCTTAGTCTTTTCTTTTGCAGCCTAAATATCTTTAGTTCTGTA | + |
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Preference number: 5 (lower is better) Translates to: MWPNLIHLCKSNLAQ*LSLFFCSLNIFSSV Trigger: TACAGAACTAAAGATATTTAGGCTGCAAAAGAAAAGACTAAGGCACTGTGCTAAGTTGGACTTACAGAGATGAATAAGATTTGGCCACAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000412134.6 |
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| CDS CCA 72 bp | CTCACTAGGGAGTGCCAGACAGTGGGCGCAGGTCAGTaGGTGCGCGCACCAGGGGCGAGCCGAAGCAGGGTG | + |
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Preference number: 6 (lower is better) Translates to: LTRECQTVGAGQ*VRAPGASRSRV Trigger: CACCCTGCTTCGGCTCGCCCCTGGTGCGCGCACCCACTGACCTGCGCCCACTGTCTGGCACTCCCTAGTGAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432314.5 |
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| CDS TCA 72 bp | AGTGGGTGCGCGCACCAGGGGCGAGCCGAAGCAGGGTaGGGCATTGCCTCACTTGGGAAGCGCAAGGGGTCA | + |
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Preference number: 6 (lower is better) Translates to: SGCAHQGRAEAG*GIASLGKRKGS Trigger: TGACCCCTTGCGCTTCCCAAGTGAGGCAATGCCTCACCCTGCTTCGGCTCGCCCCTGGTGCGCGCACCCACT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000432314.5 |
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| CDS CAA 72 bp | AGGGGCGAGCCGAAGCAGGGTGAGGCATTGCCTCACTaGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCG | + |
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Preference number: 6 (lower is better) Translates to: RGEPKQGEALPH*GSARGQGVPFP Trigger: CGGAAAGGGAACTCCCTGACCCCTTGCGCTTCCCAAGTGAGGCAATGCCTCACCCTGCTTCGGCTCGCCCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000432314.5 |
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| CDS CAA 90 bp | GCGCGCACCAGGGGCGAGCCGAAGCAGGGTGAGGCATTGCCTCACTaGGGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTCAAAGA | + |
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Preference number: 6 (lower is better) Translates to: ARTRGEPKQGEALPH*GSARGQGVPFPSQR Trigger: TCTTTGACTCGGAAAGGGAACTCCCTGACCCCTTGCGCTTCCCAAGTGAGGCAATGCCTCACCCTGCTTCGGCTCGCCCCTGGTGCGCGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000432314.5 |
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| CDS GCA 72 bp | ACTGCGCAGGAGCAGTACCTGCTGGGAGAAGGGACTTaGTGGAAGACGTGGGTAGAGCCGGTCCATTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: TAQEQYLLGEGT*WKTWVEPVHWS Trigger: GGACCAATGGACCGGCTCTACCCACGTCTTCCAGCAAGTCCCTTCTCCCAGCAGGTACTGCTCCTGCGCAGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412134.6 |
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| CDS CAA 72 bp | CAAAGCTGCCGAAGGGCAGGAGTCCCTGGGTTTCTCTaGGGGGCCGGTTGCTCTCGGAAGTTCCTCTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: QSCRRAGVPGFL*GAGCSRKFLSF Trigger: GAAGGAGAGGAACTTCCGAGAGCAACCGGCCCCCAAGAGAAACCCAGGGACTCCTGCCCTTCGGCAGCTTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000659398.1 |
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| CDS GCA 72 bp | AGGCTGAGACCCCCGCCTCTTTGGAGAAGGCTTTACTaGGCAGGAGCAGTACCTGCTGGGAGAAGGGACTTG | + |
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Preference number: 6 (lower is better) Translates to: RLRPPPLWRRLY*AGAVPAGRRDL Trigger: CAAGTCCCTTCTCCCAGCAGGTACTGCTCCTGCGCAGTAAAGCCTTCTCCAAAGAGGCGGGGGTCTCAGCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000412134.6 |
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| CDS CCA 72 bp | AAAGCTGCCGAAGGGCAGGAGTCCCTGGGTTTCTCTTaGGGGCCGGTTGCTCTCGGAAGTTCCTCTCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: KAAEGQESLGFS*GPVALGSSSPS Trigger: TGAAGGAGAGGAACTTCCGAGAGCAACCGGCCCCCAAGAGAAACCCAGGGACTCCTGCCCTTCGGCAGCTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000659398.1 |
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| CDS CAA 72 bp | TACTGCGCAGGAGCAGTACCTGCTGGGAGAAGGGACTaGCTGGAAGACGTGGGTAGAGCCGGTCCATTGGTC | + |
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Preference number: 6 (lower is better) Translates to: YCAGAVPAGRRD*LEDVGRAGPLV Trigger: GACCAATGGACCGGCTCTACCCACGTCTTCCAGCAAGTCCCTTCTCCCAGCAGGTACTGCTCCTGCGCAGTA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412134.6 |
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| CDS CAA 90 bp | AGAAGGCTTTACTGCGCAGGAGCAGTACCTGCTGGGAGAAGGGACTaGCTGGAAGACGTGGGTAGAGCCGGTCCATTGGTCCAGTGCACC | + |
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Preference number: 6 (lower is better) Translates to: RRLYCAGAVPAGRRD*LEDVGRAGPLVQCT Trigger: GGTGCACTGGACCAATGGACCGGCTCTACCCACGTCTTCCAGCAAGTCCCTTCTCCCAGCAGGTACTGCTCCTGCGCAGTAAAGCCTTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412134.6 |
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| CDS CCA 72 bp | GGTCACCCTCGAGTGCTTTTTGGTGTGAGCAGCACATaGACAAAGCTGCCGAAGGGCAGGAGTCCCTGGGTT | + |
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Preference number: 6 (lower is better) Translates to: GHPRVLFGVSST*TKLPKGRSPWV Trigger: AACCCAGGGACTCCTGCCCTTCGGCAGCTTTGTCCATGTGCTGCTCACACCAAAAAGCACTCGAGGGTGACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000659398.1 |
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| CDS CAA 90 bp | GCTGGGAGAAGGGACTTGCTGGAAGACGTGGGTAGAGCCGGTCCATaGGTCCAGTGCACCAAGAAGTCAAGAAGTTTTCAGGGGCTCAGG | + |
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Preference number: 6 (lower is better) Translates to: AGRRDLLEDVGRAGP*VQCTKKSRSFQGLR Trigger: CCTGAGCCCCTGAAAACTTCTTGACTTCTTGGTGCACTGGACCAATGGACCGGCTCTACCCACGTCTTCCAGCAAGTCCCTTCTCCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000412134.6 |
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| CDS CAA 90 bp | AAGCTGCCGAAGGGCAGGAGTCCCTGGGTTTCTCTTGGGGGCCGGTaGCTCTCGGAAGTTCCTCTCCTTCACTCTCTAAATAGCTGGTTT | + |
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Preference number: 6 (lower is better) Translates to: KLPKGRSPWVSLGGR*LSEVPLLHSLNSWF Trigger: AAACCAGCTATTTAGAGAGTGAAGGAGAGGAACTTCCGAGAGCAACCGGCCCCCAAGAGAAACCCAGGGACTCCTGCCCTTCGGCAGCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000659398.1 |
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| CDS TCA 72 bp | TCTCACTGGTACTTGTTTTCCCTGACGGTCTCCAGCTaGGAGCTGTGTGTGTGTGTGTGTGTGTGTGCGCGC | + |
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Preference number: 6 (lower is better) Translates to: SHWYLFSLTVSS*ELCVCVCVCAR Trigger: GCGCGCACACACACACACACACACACACAGCTCTCAGCTGGAGACCGTCAGGGAAAACAAGTACCAGTGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS CAA 72 bp | AAGGGCAGGAGTCCCTGGGTTTCTCTTGGGGGCCGGTaGCTCTCGGAAGTTCCTCTCCTTCACTCTCTAAAT | + |
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Preference number: 6 (lower is better) Translates to: KGRSPWVSLGGR*LSEVPLLHSLN Trigger: ATTTAGAGAGTGAAGGAGAGGAACTTCCGAGAGCAACCGGCCCCCAAGAGAAACCCAGGGACTCCTGCCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000659398.1 |
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| CDS TCA 72 bp | TTTTTGGTGCAGGTCACCCTCGAGTGCTTTTTGGTGTaGGCAGCACATGGACAAAGCTGCCGAAGGGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: FLVQVTLECFLV*AAHGQSCRRAG Trigger: TCCTGCCCTTCGGCAGCTTTGTCCATGTGCTGCTCACACCAAAAAGCACTCGAGGGTGACCTGCACCAAAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000659398.1 |
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| CDS CCA 72 bp | GGGACTTGCTGGAAGACGTGGGTAGAGCCGGTCCATTaGTCCAGTGCACCAAGAAGTCAAGAAGTTTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: GTCWKTWVEPVH*SSAPRSQEVFR Trigger: CCTGAAAACTTCTTGACTTCTTGGTGCACTGGACCAATGGACCGGCTCTACCCACGTCTTCCAGCAAGTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412134.6 |
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| CDS GCA 72 bp | ATCCACTGTGCCCAGACTACGGCAATGCATTTTTGGTaGAGGTCACCCTCGAGTGCTTTTTGGTGTGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: IHCAQTTAMHFW*RSPSSAFWCEQ Trigger: CTGCTCACACCAAAAAGCACTCGAGGGTGACCTGCACCAAAAATGCATTGCCGTAGTCTGGGCACAGTGGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000659398.1 |
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| CDS CCA 72 bp | ATGCATTTTTGGTGCAGGTCACCCTCGAGTGCTTTTTaGTGTGAGCAGCACATGGACAAAGCTGCCGAAGGG | + |
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Preference number: 6 (lower is better) Translates to: MHFWCRSPSSAF*CEQHMDKAAEG Trigger: CCCTTCGGCAGCTTTGTCCATGTGCTGCTCACACCAAAAAGCACTCGAGGGTGACCTGCACCAAAAATGCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000659398.1 |
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| CDS CAA 72 bp | AGGGACTTGCTGGAAGACGTGGGTAGAGCCGGTCCATaGGTCCAGTGCACCAAGAAGTCAAGAAGTTTTCAG | + |
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Preference number: 6 (lower is better) Translates to: RDLLEDVGRAGP*VQCTKKSRSFQ Trigger: CTGAAAACTTCTTGACTTCTTGGTGCACTGGACCAATGGACCGGCTCTACCCACGTCTTCCAGCAAGTCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412134.6 |
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| CDS GCA 72 bp | GTCTGCAGATGTTTTATCCAGGGCAGTTTACGTTGTTaGTTTTGGGCCGCAGTAGGTGAGTCAGCATGGGAA | + |
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Preference number: 6 (lower is better) Translates to: VCRCFIQGSLRC*FWAAVGESAWE Trigger: TTCCCATGCTGACTCACCTACTGCGGCCCAAAAGCAACAACGTAAACTGCCCTGGATAAAACATCTGCAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS CCA 72 bp | AGATGTTTTATCCAGGGCAGTTTACGTTGTTGCTTTTaGGCCGCAGTAGGTGAGTCAGCATGGGAAGGACAC | + |
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Preference number: 6 (lower is better) Translates to: RCFIQGSLRCCF*AAVGESAWEGH Trigger: GTGTCCTTCCCATGCTGACTCACCTACTGCGGCCCAAAAGCAACAACGTAAACTGCCCTGGATAAAACATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS CAA 72 bp | CCATCAGAGTCACAGAGATTAATGCTACTGAGCCTCTaGCACACCAACTTGCTGGCTGCCATGCTACAAGCA | + |
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Preference number: 6 (lower is better) Translates to: PSESQRLMLLSL*HTNLLAAMLQA Trigger: TGCTTGTAGCATGGCAGCCAGCAAGTTGGTGTGCAAGAGGCTCAGTAGCATTAATCTCTGTGACTCTGATGG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412134.6 |
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| CDS CCA 72 bp | CACACACACACACACACACACACACACACCATACTCTaGACAGAATTAGTCCACATTTCCTATAGGTGTCAG | + |
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Preference number: 6 (lower is better) Translates to: HTHTHTHTHTIL*TELVHISYRCQ Trigger: CTGACACCTATAGGAAATGTGGACTAATTCTGTCCAGAGTATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS CAA 72 bp | TCTGAGTCAGGAAATGAGAGAGATGATAGCTGCCTTTaGGTCCTAATCCTAACCACTCTGCTTGACAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: SESGNERDDSCL*VLILTTLLDRR Trigger: TCTCCTGTCAAGCAGAGTGGTTAGGATTAGGACCAAAAGGCAGCTATCATCTCTCTCATTTCCTGACTCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS GCA 72 bp | GTATTGATATTTGCAATTACTGTCCCCATAACGGCATaGATGTATACATCTGTGCATGTGCACCTGCGTGTG | + |
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Preference number: 6 (lower is better) Translates to: VLIFAITVPITA*MYTSVHVHLRV Trigger: CACACGCAGGTGCACATGCACAGATGTATACATGCATGCCGTTATGGGGACAGTAATTGCAAATATCAATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS GCA 72 bp | CTTTTGTCTGAGTCAGGAAATGAGAGAGATGATAGCTaGCTTTTGGTCCTAATCCTAACCACTCTGCTTGAC | + |
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Preference number: 6 (lower is better) Translates to: LLSESGNERDDS*LLVLILTTLLD Trigger: GTCAAGCAGAGTGGTTAGGATTAGGACCAAAAGGCAGCTATCATCTCTCTCATTTCCTGACTCAGACAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS CCA 72 bp | TGGTACGTCCATGAAGGTCTGAGCTCCTTGAAGATGTaGCCAAATCTTATTCATCTCTGTAAGTCCAACTTA | + |
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Preference number: 6 (lower is better) Translates to: WYVHEGLSSLKM*PNLIHLCKSNL Trigger: TAAGTTGGACTTACAGAGATGAATAAGATTTGGCCACATCTTCAAGGAGCTCAGACCTTCATGGACGTACCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000432314.5 |
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| CDS CAA 72 bp | ACTTGTCTGCCTGGCTCTCTGGCCAAAAACTGTCTATaGCTTATAACAACCACATGCCAGGTATTTTCATTC | + |
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Preference number: 6 (lower is better) Translates to: TCLPGSLAKNCL*LITTTCQVFSF Trigger: GAATGAAAATACCTGGCATGTGGTTGTTATAAGCAATAGACAGTTTTTGGCCAGAGAGCCAGGCAGACAAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS GCA 72 bp | ACTGGAGAAAACCAAAACCACAGCATCAGTAATTTATaGAAAGTCCCTCAGCACTTAAGAACCTGTATCGGA | + |
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Preference number: 6 (lower is better) Translates to: TGENQNHSISNL*KVPQHLRTCIG Trigger: TCCGATACAGGTTCTTAAGTGCTGAGGGACTTTGCATAAATTACTGATGCTGTGGTTTTGGTTTTCTCCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659398.1 |
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| CDS CAA 90 bp | GATATTAACACTTGTCTGCCTGGCTCTCTGGCCAAAAACTGTCTATaGCTTATAACAACCACATGCCAGGTATTTTCATTCAATGCACAG | + |
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Preference number: 6 (lower is better) Translates to: DINTCLPGSLAKNCL*LITTTCQVFSFNAQ Trigger: CTGTGCATTGAATGAAAATACCTGGCATGTGGTTGTTATAAGCAATAGACAGTTTTTGGCCAGAGAGCCAGGCAGACAAGTGTTAATATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS CAA 90 bp | GAGGTCTACACTTGTGCAATGGCTGAAGTAACAACCATAACAGTATaGATATTTGCAATTACTGTCCCCATAACGGCATGCATGTATACA | + |
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Preference number: 6 (lower is better) Translates to: EVYTCAMAEVTTITV*IFAITVPITACMYT Trigger: TGTATACATGCATGCCGTTATGGGGACAGTAATTGCAAATATCAATACTGTTATGGTTGTTACTTCAGCCATTGCACAAGTGTAGACCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS CAA 72 bp | GTATATATTTGGTACGTCCATGAAGGTCTGAGCTCCTaGAAGATGTGGCCAAATCTTATTCATCTCTGTAAG | + |
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Preference number: 6 (lower is better) Translates to: VYIWYVHEGLSS*KMWPNLIHLCK Trigger: CTTACAGAGATGAATAAGATTTGGCCACATCTTCAAGGAGCTCAGACCTTCATGGACGTACCAAATATATAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000432314.5 |
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| CDS TCA 72 bp | GAGATGAAAGGAAGACCAATTACCACTGGTAATGGCTaGCTACAGTGTGCATTCATTATCCAAGTTATCATT | + |
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Preference number: 6 (lower is better) Translates to: EMKGRPITTGNG*LQCAFIIQVII Trigger: AATGATAACTTGGATAATGAATGCACACTGTAGTCAGCCATTACCAGTGGTAATTGGTCTTCCTTTCATCTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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| CDS CCA 72 bp | ATTATGATAAGCAGTAGAGTTAGTTCTGTATATATTTaGTACGTCCATGAAGGTCTGAGCTCCTTGAAGATG | + |
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Preference number: 6 (lower is better) Translates to: IMISSRVSSVYI*YVHEGLSSLKM Trigger: CATCTTCAAGGAGCTCAGACCTTCATGGACGTACCAAATATATACAGAACTAACTCTACTGCTTATCATAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000412134.6 ENST00000421212.2 ENST00000432314.5 |
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| CDS GCA 72 bp | GCTTATAACAACCACATGCCAGGTATTTTCATTCAATaGACAGGCATATACAAAAGTAACCATGTATATAGC | + |
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Preference number: 6 (lower is better) Translates to: AYNNHMPGIFIQ*TGIYKSNHVYS Trigger: GCTATATACATGGTTACTTTTGTATATGCCTGTGCATTGAATGAAAATACCTGGCATGTGGTTGTTATAAGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000412134.6 ENST00000421212.2 |
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