Pregenerated sensors for LINC01247 (Homo sapiens)
Ensembl gene IDs: ENSG00000227007Ensembl transcript IDs: ENST00000448901.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTACATGGAACGAGGAAGGTTGAGGTCCTGGAGAGGATGAAGGCCTaGGAAGCTCCACTCTCAGCACCTGGAAGGACTGCAGGCCTCAGG | + |
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Preference number: 5 (lower is better) Translates to: VHGTRKVEVLERMKA*EAPLSAPGRTAGLR Trigger: CCTGAGGCCTGCAGTCCTTCCAGGTGCTGAGAGTGGAGCTTCCCAGGCCTTCATCCTCTCCAGGACCTCAACCTTCCTCGTTCCATGTAC 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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| CDS TCA 90 bp | CTATGTCTGTACATGGAACGAGGAAGGTTGAGGTCCTGGAGAGGATaGAGGCCTGGGAAGCTCCACTCTCAGCACCTGGAAGGACTGCAG | + |
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Preference number: 5 (lower is better) Translates to: LCLYMERGRLRSWRG*RPGKLHSQHLEGLQ Trigger: CTGCAGTCCTTCCAGGTGCTGAGAGTGGAGCTTCCCAGGCCTTCATCCTCTCCAGGACCTCAACCTTCCTCGTTCCATGTACAGACATAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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| CDS GCA 90 bp | CAGCCCATTACTGCTTGGTTGGAAGTAGTGATGAAGTGTCTTCTGTaGATTCCTTTTAAATTGATGCCTCCCATGTTTCTGGTAAAATAC | + |
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Preference number: 5 (lower is better) Translates to: QPITAWLEVVMKCLL*IPFKLMPPMFLVKY Trigger: GTATTTTACCAGAAACATGGGAGGCATCAATTTAAAAGGAATGCACAGAAGACACTTCATCACTACTTCCAACCAAGCAGTAATGGGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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| CDS GCA 90 bp | GCGAGAGTCCAGAACAATGAAATTACAATCAAACCAATGCTGATATaGAATGCTACTAACCATGGTTTAATATTTCCTAATTGTCTGTTC | + |
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Preference number: 5 (lower is better) Translates to: ARVQNNEITIKPMLI*NATNHGLIFPNCLF Trigger: GAACAGACAATTAGGAAATATTAAACCATGGTTAGTAGCATTGCATATCAGCATTGGTTTGATTGTAATTTCATTGTTCTGGACTCTCGC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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| CDS CCA 72 bp | ACGAGGAAGGTTGAGGTCCTGGAGAGGATGAAGGCCTaGGAAGCTCCACTCTCAGCACCTGGAAGGACTGCA | + |
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Preference number: 6 (lower is better) Translates to: TRKVEVLERMKA*EAPLSAPGRTA Trigger: TGCAGTCCTTCCAGGTGCTGAGAGTGGAGCTTCCCAGGCCTTCATCCTCTCCAGGACCTCAACCTTCCTCGT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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| CDS GCA 72 bp | TCAACCATGCGAGGGCATAATGAGAGGACACCCATCTaGAAACCAGGAGCAGAGCCCTCGCCAGACACCAGA | + |
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Preference number: 6 (lower is better) Translates to: STMRGHNERTPI*KPGAEPSPDTR Trigger: TCTGGTGTCTGGCGAGGGCTCTGCTCCTGGTTTGCAGATGGGTGTCCTCTCATTATGCCCTCGCATGGTTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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| CDS CCA 72 bp | AACCACACACTGCTCTGTGACGTGTTTCCTTGGCAGTaGATCCAAGTCCGTAGCATCCATCGAAGGGGTCAG | + |
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Preference number: 6 (lower is better) Translates to: NHTLLCDVFPWQ*IQVRSIHRRGQ Trigger: CTGACCCCTTCGATGGATGCTACGGACTTGGATCCACTGCCAAGGAAACACGTCACAGAGCAGTGTGTGGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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| CDS CCA 72 bp | TATGCCAACCACACACTGCTCTGTGACGTGTTTCCTTaGCAGTGGATCCAAGTCCGTAGCATCCATCGAAGG | + |
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Preference number: 6 (lower is better) Translates to: YANHTLLCDVFP*QWIQVRSIHRR Trigger: CCTTCGATGGATGCTACGGACTTGGATCCACTGCCAAGGAAACACGTCACAGAGCAGTGTGTGGTTGGCATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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| CDS CCA 72 bp | ACAGACAGCAAAGCTGGACTTGGAATGACCACTGTCTaGATACAGGCTCAGGAAAAACCACAGACTGGGGAA | + |
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Preference number: 6 (lower is better) Translates to: TDSKAGLGMTTV*IQAQEKPQTGE Trigger: TTCCCCAGTCTGTGGTTTTTCCTGAGCCTGTATCCAGACAGTGGTCATTCCAAGTCCAGCTTTGCTGTCTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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| CDS TCA 72 bp | AAGTCTCATGTCCCACTGACACTGAGTCACCAATCTTaGACGAGAAATGGCGGGACTCTTCTCCATGATTCA | + |
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Preference number: 6 (lower is better) Translates to: KSHVPLTLSHQS*TRNGGTLLHDS Trigger: TGAATCATGGAGAAGAGTCCCGCCATTTCTCGTTCAAGATTGGTGACTCAGTGTCAGTGGGACATGAGACTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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| CDS GCA 72 bp | TTTACTACACGACATACCTACTCTGTCTTCACCTTCTaGCATGAATGGAAGCTTCCTGAGGCCTCCCTAGAT | + |
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Preference number: 6 (lower is better) Translates to: FTTRHTYSVFTF*HEWKLPEASLD Trigger: ATCTAGGGAGGCCTCAGGAAGCTTCCATTCATGGCAGAAGGTGAAGACAGAGTAGGTATGTCGTGTAGTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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| CDS TCA 72 bp | CCTTGTATTTGTAGTACCTCCTTAAACGATTTGCCCTaGATGCCTCTCTGCCTTCACCTTAGTCCCTGTTCA | + |
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Preference number: 6 (lower is better) Translates to: PCICSTSLNDLP*MPLCLHLSPCS Trigger: TGAACAGGGACTAAGGTGAAGGCAGAGAGGCATTCAGGGCAAATCGTTTAAGGAGGTACTACAAATACAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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| CDS TCA 72 bp | GCCTTCACCTTAGTCCCTGTTCAGCTTGTCCCAATATaGAATAAAACAGACAATGGGCACTCCAAATTATGG | + |
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Preference number: 6 (lower is better) Translates to: AFTLVPVQLVPI*NKTDNGHSKLW Trigger: CCATAATTTGGAGTGCCCATTGTCTGTTTTATTTCATATTGGGACAAGCTGAACAGGGACTAAGGTGAAGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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| CDS CAA 90 bp | AATAGGGCAAGTTGTGCATATAAAAGTACTCCTCACATATATGATTaGGTGTGTGGGAGGGTGATGAGAGACAAAATTGGGAACTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: NRASCAYKSTPHIYD*VCGRVMRDKIGNCC Trigger: GCAGCAGTTCCCAATTTTGTCTCTCATCACCCTCCCACACACCAAATCATATATGTGAGGAGTACTTTTATATGCACAACTTGCCCTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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| CDS CAA 72 bp | AGTTGTGCATATAAAAGTACTCCTCACATATATGATTaGGTGTGTGGGAGGGTGATGAGAGACAAAATTGGG | + |
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Preference number: 6 (lower is better) Translates to: SCAYKSTPHIYD*VCGRVMRDKIG Trigger: CCCAATTTTGTCTCTCATCACCCTCCCACACACCAAATCATATATGTGAGGAGTACTTTTATATGCACAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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| CDS TCA 72 bp | TTAAGGAGACACTCTTTCTTAGTTTCCTGCAAGTGTTaGCCTTGTATTTGTAGTACCTCCTTAAACGATTTG | + |
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Preference number: 6 (lower is better) Translates to: LRRHSFLVSCKC*PCICSTSLNDL Trigger: CAAATCGTTTAAGGAGGTACTACAAATACAAGGTCAACACTTGCAGGAAACTAAGAAAGAGTGTCTCCTTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448901.1 |
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