Pregenerated sensors for LINC01243 (Homo sapiens)
Ensembl gene IDs: ENSG00000260720Ensembl transcript IDs: ENST00000562065.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CAATGTCTTTTATGCCGGAGATTTCCTTTCTCTGTGCCATTACTGTaGGAACATTCCCAGTATAGCCCACTAGAGGATGAGAAACATGTG | + |
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Preference number: 5 (lower is better) Translates to: QCLLCRRFPFSVPLL*EHSQYSPLEDEKHV Trigger: CACATGTTTCTCATCCTCTAGTGGGCTATACTGGGAATGTTCTCACAGTAATGGCACAGAGAAAGGAAATCTCCGGCATAAAAGACATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000562065.1 |
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| CDS TCA 90 bp | CACTCATATAAATCAGAACACCACCTAGGCAGAATAAGTATTAGCTaGCACCCAAAGTTAGAAATGGCTTTGGTAATTAAGGTAGTACTG | + |
|
Preference number: 5 (lower is better) Translates to: HSYKSEHHLGRISIS*HPKLEMALVIKVVL Trigger: CAGTACTACCTTAATTACCAAAGCCATTTCTAACTTTGGGTGTCAGCTAATACTTATTCTGCCTAGGTGGTGTTCTGATTTATATGAGTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000562065.1 |
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| CDS TCA 72 bp | CAGTATAGCCCACTAGAGGATGAGAAACATGTGGAATaGGCCAAGTCACCCCAGTCATCAAAGCTAAAGGCA | + |
|
Preference number: 6 (lower is better) Translates to: QYSPLEDEKHVE*AKSPQSSKLKA Trigger: TGCCTTTAGCTTTGATGACTGGGGTGACTTGGCTCATTCCACATGTTTCTCATCCTCTAGTGGGCTATACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000562065.1 |
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| CDS TCA 72 bp | TTATGCCGGAGATTTCCTTTCTCTGTGCCATTACTGTaGGAACATTCCCAGTATAGCCCACTAGAGGATGAG | + |
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Preference number: 6 (lower is better) Translates to: LCRRFPFSVPLL*EHSQYSPLEDE Trigger: CTCATCCTCTAGTGGGCTATACTGGGAATGTTCTCACAGTAATGGCACAGAGAAAGGAAATCTCCGGCATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000562065.1 |
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| CDS TCA 72 bp | AAATCAGAACACCACCTAGGCAGAATAAGTATTAGCTaGCACCCAAAGTTAGAAATGGCTTTGGTAATTAAG | + |
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Preference number: 6 (lower is better) Translates to: KSEHHLGRISIS*HPKLEMALVIK Trigger: CTTAATTACCAAAGCCATTTCTAACTTTGGGTGTCAGCTAATACTTATTCTGCCTAGGTGGTGTTCTGATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000562065.1 |
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