Pregenerated sensors for LINC01239 (Homo sapiens)
Ensembl gene IDs: ENSG00000234840Ensembl transcript IDs: ENST00000433645.1, ENST00000436786.1, ENST00000669551.1
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TTGGGGAGGTTGGCCAACGACCACTCTAACTGCTTCCTGCTGAATTaGGGCGTAGTAGGTGTCATGCAGTTGAGATTTCCTCGGGAGGGG | + |
|
Preference number: 5 (lower is better) Translates to: LGRLANDHSNCFLLN*GVVGVMQLRFPREG Trigger: CCCCTCCCGAGGAAATCTCAACTGCATGACACCTACTACGCCCCAATTCAGCAGGAAGCAGTTAGAGTGGTCGTTGGCCAACCTCCCCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS TCA 90 bp | ATGGGAGGGGACCCAAAGTGGGTAGCCATTGCTGGCTTGAATGCCTaGGTTTATATCCTGATCATTGTCCCGCCCCTTGTGCTGTCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: MGGDPKWVAIAGLNA*VYILIIVPPLVLSG Trigger: GCCTGACAGCACAAGGGGCGGGACAATGATCAGGATATAAACTCAGGCATTCAAGCCAGCAATGGCTACCCACTTTGGGTCCCCTCCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CCA 90 bp | ACAGCTCTTAAAGGTGGTGTGTCCAGAGTTGTTTGTTCCTCCCGGTaGGTTCCTGGTCTCGCAGACTTCAGGAATGAAGCCGCAGACCCT | + |
|
Preference number: 5 (lower is better) Translates to: TALKGGVSRVVCSSR*VPGLADFRNEAADP Trigger: AGGGTCTGCGGCTTCATTCCTGAAGTCTGCGAGACCAGGAACCCACCGGGAGGAACAAACAACTCTGGACACACCACCTTTAAGAGCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS GCA 90 bp | AGGCTGGCGGCAGACCACCAAATTGTGACCATGAGCTTTTGTTGGTaGAAGTTCAGCTTTGGGAAGTGCTTTGAAGCTTCTTCTCCATCC | + |
|
Preference number: 5 (lower is better) Translates to: RLAADHQIVTMSFCW*KFSFGKCFEASSPS Trigger: GGATGGAGAAGAAGCTTCAAAGCACTTCCCAAAGCTGAACTTGCACCAACAAAAGCTCATGGTCACAATTTGGTGGTCTGCCGCCAGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CCA 90 bp | ATCAGGCTGGCGGCAGACCACCAAATTGTGACCATGAGCTTTTGTTaGTGCAAGTTCAGCTTTGGGAAGTGCTTTGAAGCTTCTTCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: IRLAADHQIVTMSFC*CKFSFGKCFEASSP Trigger: TGGAGAAGAAGCTTCAAAGCACTTCCCAAAGCTGAACTTGCACCAACAAAAGCTCATGGTCACAATTTGGTGGTCTGCCGCCAGCCTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CCA 90 bp | GGTTGGTTATGTGACATGTGGTCAGGCGTTGTGGTAGAGAAGAATTaGATCCTTTTGGTTGACCAATGCCGGCTGCAGGCCTTGAAGTTT | + |
|
Preference number: 5 (lower is better) Translates to: GWLCDMWSGVVVEKN*ILLVDQCRLQALKF Trigger: AAACTTCAAGGCCTGCAGCCGGCATTGGTCAACCAAAAGGATCCAATTCTTCTCTACCACAACGCCTGACCACATGTCACATAACCAACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS TCA 90 bp | GAGACTTCAGGGCTACAATTGACCTCCAGAAATTGCACTGACATGTaGCTCACACAGGTAGCATGTGAGTTCCCTTCTCCTCTTCTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: ETSGLQLTSRNCTDM*LTQVACEFPSPLLL Trigger: AAGAAGAAGAGGAGAAGGGAACTCACATGCTACCTGTGTGAGTCACATGTCAGTGCAATTTCTGGAGGTCAATTGTAGCCCTGAAGTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS TCA 90 bp | GACCATGAGCTTTTGTTGGTGCAAGTTCAGCTTTGGGAAGTGCTTTaGAGCTTCTTCTCCATCCAACCACTGAGCTGGTTTTTGCAGCTT | + |
|
Preference number: 5 (lower is better) Translates to: DHELLLVQVQLWEVL*SFFSIQPLSWFLQL Trigger: AAGCTGCAAAAACCAGCTCAGTGGTTGGATGGAGAAGAAGCTTCAAAGCACTTCCCAAAGCTGAACTTGCACCAACAAAAGCTCATGGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CCA 90 bp | ATCAGCTTCAATGATTGCTCTCAATTTGTCGTTGTCTACTTCCAATaGCTGGCCACTACACTCTTCGTCTTCAAGCCTCTCGTTTCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: ISFNDCSQFVVVYFQ*LATTLFVFKPLVSF Trigger: GAAGGAAACGAGAGGCTTGAAGACGAAGAGTGTAGTGGCCAGCCATTGGAAGTAGACAACGACAAATTGAGAGCAATCATTGAAGCTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS TCA 90 bp | TCACCTCTCACAATCATTTGGTGGTTACTGTCTAGAGGTCTCACCTaGAGATGTGGAAGTTCCACTAAAACAAATGTATCATGCCCTCCG | + |
|
Preference number: 5 (lower is better) Translates to: SPLTIIWWLLSRGLT*RCGSSTKTNVSCPP Trigger: CGGAGGGCATGATACATTTGTTTTAGTGGAACTTCCACATCTTCAGGTGAGACCTCTAGACAGTAACCACCAAATGATTGTGAGAGGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000433645.1 ENST00000669551.1 |
||
| CDS CCA 90 bp | GCTAGACACAGAGCGCTGATTGGTGCGTTTTTACAGAGTGGTGATTaGTGCATTTACAATCCTTTAGCTAGACACAGAGTGCTGATTTGT | + |
|
Preference number: 5 (lower is better) Translates to: ARHRALIGAFLQSGD*CIYNPLARHRVLIC Trigger: ACAAATCAGCACTCTGTGTCTAGCTAAAGGATTGTAAATGCACCAATCACCACTCTGTAAAAACGCACCAATCAGCGCTCTGTGTCTAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS CCA 90 bp | GCTAGACACAGAGTGCTGATTTGTGCATTTTTACAGAGTACTGAATaGTGCCTTTACAATCCTTTAGCTAGACACAGAGTGCTGATTGGT | + |
|
Preference number: 5 (lower is better) Translates to: ARHRVLICAFLQSTE*CLYNPLARHRVLIG Trigger: ACCAATCAGCACTCTGTGTCTAGCTAAAGGATTGTAAAGGCACCATTCAGTACTCTGTAAAAATGCACAAATCAGCACTCTGTGTCTAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS GCA 72 bp | GCGGAAGGCTACCCGAGAGGATTGCCGCTGCTAGCTTaGGTGGCCAGCTTTTATTCCCTTATTTGGCCCCGT | + |
|
Preference number: 6 (lower is better) Translates to: AEGYPRGLPLLA*VASFYSLIWPR Trigger: ACGGGGCCAAATAAGGGAATAAAAGCTGGCCACGCAAGCTAGCAGCGGCAATCCTCTCGGGTAGCCTTCCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS CAA 72 bp | AGCGGAAGGCTACCCGAGAGGATTGCCGCTGCTAGCTaGCGTGGCCAGCTTTTATTCCCTTATTTGGCCCCG | + |
|
Preference number: 6 (lower is better) Translates to: SGRLPERIAAAS*RGQLLFPYLAP Trigger: CGGGGCCAAATAAGGGAATAAAAGCTGGCCACGCAAGCTAGCAGCGGCAATCCTCTCGGGTAGCCTTCCGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS CCA 72 bp | TCAGTCCCCCATCTCAACAGAAAACCCAAGTGCTGTTaGGGAGGTTGGCCAACGACCACTCTAACTGCTTCC | + |
|
Preference number: 6 (lower is better) Translates to: SVPHLNRKPKCC*GGWPTTTLTAS Trigger: GGAAGCAGTTAGAGTGGTCGTTGGCCAACCTCCCCAACAGCACTTGGGTTTTCTGTTGAGATGGGGGACTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CCA 72 bp | AAAGGTGGTGTGTCCAGAGTTGTTTGTTCCTCCCGGTaGGTTCCTGGTCTCGCAGACTTCAGGAATGAAGCC | + |
|
Preference number: 6 (lower is better) Translates to: KGGVSRVVCSSR*VPGLADFRNEA Trigger: GGCTTCATTCCTGAAGTCTGCGAGACCAGGAACCCACCGGGAGGAACAAACAACTCTGGACACACCACCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS GCA 72 bp | AGGGGACCCAAAGTGGGTAGCCATTGCTGGCTTGAATaGCTGAGTTTATATCCTGATCATTGTCCCGCCCCT | + |
|
Preference number: 6 (lower is better) Translates to: RGPKVGSHCWLE*LSLYPDHCPAP Trigger: AGGGGCGGGACAATGATCAGGATATAAACTCAGGCATTCAAGCCAGCAATGGCTACCCACTTTGGGTCCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CCA 72 bp | TGTGACATGTGGTCAGGCGTTGTGGTAGAGAAGAATTaGATCCTTTTGGTTGACCAATGCCGGCTGCAGGCC | + |
|
Preference number: 6 (lower is better) Translates to: CDMWSGVVVEKN*ILLVDQCRLQA Trigger: GGCCTGCAGCCGGCATTGGTCAACCAAAAGGATCCAATTCTTCTCTACCACAACGCCTGACCACATGTCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS TCA 72 bp | GACCCAAAGTGGGTAGCCATTGCTGGCTTGAATGCCTaGGTTTATATCCTGATCATTGTCCCGCCCCTTGTG | + |
|
Preference number: 6 (lower is better) Translates to: DPKWVAIAGLNA*VYILIIVPPLV Trigger: CACAAGGGGCGGGACAATGATCAGGATATAAACTCAGGCATTCAAGCCAGCAATGGCTACCCACTTTGGGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CAA 72 bp | TGTCCCGAGTTTCTTCCTTCTGGTGGGTTCACGGTCTaGCTGACTTCAGGAGTGAAGTTGCAGACTTTCGCA | + |
|
Preference number: 6 (lower is better) Translates to: CPEFLPSGGFTV*LTSGVKLQTFA Trigger: TGCGAAAGTCTGCAACTTCACTCCTGAAGTCAGCAAGACCGTGAACCCACCAGAAGGAAGAAACTCGGGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS CCA 72 bp | TTGGCCAACGACCACTCTAACTGCTTCCTGCTGAATTaGGGCGTAGTAGGTGTCATGCAGTTGAGATTTCCT | + |
|
Preference number: 6 (lower is better) Translates to: LANDHSNCFLLN*GVVGVMQLRFP Trigger: AGGAAATCTCAACTGCATGACACCTACTACGCCCCAATTCAGCAGGAAGCAGTTAGAGTGGTCGTTGGCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CAA 72 bp | TGGATCCTTTTGGTTGACCAATGCCGGCTGCAGGCCTaGAAGTTTTTGGCACATCTCATCGATTTGCTGAGC | + |
|
Preference number: 6 (lower is better) Translates to: WILLVDQCRLQA*KFLAHLIDLLS Trigger: GCTCAGCAAATCGATGAGATGTGCCAAAAACTTCAAGGCCTGCAGCCGGCATTGGTCAACCAAAAGGATCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CAA 72 bp | CAATTGTCTCCAGAATTGGTTCCTTCCGGTGGGTTCTaGGTCTCACTGACTTCAAGAATGAAGCCGCTGACC | + |
|
Preference number: 6 (lower is better) Translates to: QLSPELVPSGGF*VSLTSRMKPLT Trigger: GGTCAGCGGCTTCATTCTTGAAGTCAGTGAGACCAAGAACCCACCGGAAGGAACCAATTCTGGAGACAATTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS CCA 72 bp | GCGGCAGACCACCAAATTGTGACCATGAGCTTTTGTTaGTGCAAGTTCAGCTTTGGGAAGTGCTTTGAAGCT | + |
|
Preference number: 6 (lower is better) Translates to: AADHQIVTMSFC*CKFSFGKCFEA Trigger: AGCTTCAAAGCACTTCCCAAAGCTGAACTTGCACCAACAAAAGCTCATGGTCACAATTTGGTGGTCTGCCGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS TCA 72 bp | GCGGACCCAAAGAGTGAGCAGCAGCAAGATTTATCATaGACAGCAAAAGAACAAAGCTTCCACAGAGCGGAA | + |
|
Preference number: 6 (lower is better) Translates to: ADPKSEQQQDLS*TAKEQSFHRAE Trigger: TTCCGCTCTGTGGAAGCTTTGTTCTTTTGCTGTTCATGATAAATCTTGCTGCTGCTCACTCTTTGGGTCCGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS CCA 72 bp | AGATATTCAGATGTGTCCCGAGTTTCTTCCTTCTGGTaGGTTCACGGTCTTGCTGACTTCAGGAGTGAAGTT | + |
|
Preference number: 6 (lower is better) Translates to: RYSDVSRVSSFW*VHGLADFRSEV Trigger: AACTTCACTCCTGAAGTCAGCAAGACCGTGAACCCACCAGAAGGAAGAAACTCGGGACACATCTGAATATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS CCA 72 bp | AAAGCTCCAATTGTCTCCAGAATTGGTTCCTTCCGGTaGGTTCTTGGTCTCACTGACTTCAAGAATGAAGCC | + |
|
Preference number: 6 (lower is better) Translates to: KAPIVSRIGSFR*VLGLTDFKNEA Trigger: GGCTTCATTCTTGAAGTCAGTGAGACCAAGAACCCACCGGAAGGAACCAATTCTGGAGACAATTGGAGCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS CAA 72 bp | GCTTTTGTTGGTGCAAGTTCAGCTTTGGGAAGTGCTTaGAAGCTTCTTCTCCATCCAACCACTGAGCTGGTT | + |
|
Preference number: 6 (lower is better) Translates to: AFVGASSALGSA*KLLLHPTTELV Trigger: AACCAGCTCAGTGGTTGGATGGAGAAGAAGCTTCAAAGCACTTCCCAAAGCTGAACTTGCACCAACAAAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CAA 90 bp | TGTACGTTCATTAGCAGTTCCCGCGCCAAATGTGTTGCTGATGTTTaGAGAGTTGTCTCTGCTGCTTTACGACCCATTTTGAACCCGAAT | + |
|
Preference number: 6 (lower is better) Translates to: CTFISSSRAKCVADV*RVVSAALRPILNPN Trigger: ATTCGGGTTCAAAATGGGTCGTAAAGCAGCAGAGACAACTCTCAAAACATCAGCAACACATTTGGCGCGGGAACTGCTAATGAACGTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS TCA 72 bp | CTTTTGTTGGTGCAAGTTCAGCTTTGGGAAGTGCTTTaGAGCTTCTTCTCCATCCAACCACTGAGCTGGTTT | + |
|
Preference number: 6 (lower is better) Translates to: LLLVQVQLWEVL*SFFSIQPLSWF Trigger: AAACCAGCTCAGTGGTTGGATGGAGAAGAAGCTTCAAAGCACTTCCCAAAGCTGAACTTGCACCAACAAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS TCA 72 bp | GGGCTACAATTGACCTCCAGAAATTGCACTGACATGTaGCTCACACAGGTAGCCTGCAATAAAGGATACAAG | + |
|
Preference number: 6 (lower is better) Translates to: GLQLTSRNCTDM*LTQVACNKGYK Trigger: CTTGTATCCTTTATTGCAGGCTACCTGTGTGAGTCACATGTCAGTGCAATTTCTGGAGGTCAATTGTAGCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433645.1 |
||
| CDS TCA 72 bp | GGGCTACAATTGACCTCCAGAAATTGCACTGACATGTaGCTCACACAGGTAGCTATGGAGATCTTCTCATCA | + |
|
Preference number: 6 (lower is better) Translates to: GLQLTSRNCTDM*LTQVAMEIFSS Trigger: TGATGAGAAGATCTCCATAGCTACCTGTGTGAGTCACATGTCAGTGCAATTTCTGGAGGTCAATTGTAGCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS TCA 72 bp | GACTTCAGGGCTACAATTGACCTCCAGAAATTGCACTaGCATGTGACTCACACAGGTAGCTATGGAGATCTT | + |
|
Preference number: 6 (lower is better) Translates to: DFRATIDLQKLH*HVTHTGSYGDL Trigger: AAGATCTCCATAGCTACCTGTGTGAGTCACATGTCAGTGCAATTTCTGGAGGTCAATTGTAGCCCTGAAGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS CCA 72 bp | CGTCCTGCTGATTGGTCCATTTTACAGAGCGCTGATTaGTCCATTTTACAGAGTGCTGATTGGTGCGTTTAT | + |
|
Preference number: 6 (lower is better) Translates to: RPADWSILQSAD*SILQSADWCVY Trigger: ATAAACGCACCAATCAGCACTCTGTAAAATGGACCAATCAGCGCTCTGTAAAATGGACCAATCAGCAGGACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS CAA 72 bp | AGAGGATCAGCTTCAATGATTGCTCTCAATTTGTCGTaGTCTACTTCCAATGGCTGGCCACTACACTCTTCG | + |
|
Preference number: 6 (lower is better) Translates to: RGSASMIALNLS*STSNGWPLHSS Trigger: CGAAGAGTGTAGTGGCCAGCCATTGGAAGTAGACAACGACAAATTGAGAGCAATCATTGAAGCTGATCCTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CAA 90 bp | GTAGTTGTAAGAGGATCAGCTTCAATGATTGCTCTCAATTTGTCGTaGTCTACTTCCAATGGCTGGCCACTACACTCTTCGTCTTCAAGC | + |
|
Preference number: 6 (lower is better) Translates to: VVVRGSASMIALNLS*STSNGWPLHSSSSS Trigger: GCTTGAAGACGAAGAGTGTAGTGGCCAGCCATTGGAAGTAGACAACGACAAATTGAGAGCAATCATTGAAGCTGATCCTCTTACAACTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS TCA 72 bp | GGGAAGTGCTTTGAAGCTTCTTCTCCATCCAACCACTaGGCTGGTTTTTGCAGCTTGTCATATAAAATCCAC | + |
|
Preference number: 6 (lower is better) Translates to: GKCFEASSPSNH*AGFCSLSYKIH Trigger: GTGGATTTTATATGACAAGCTGCAAAAACCAGCTCAGTGGTTGGATGGAGAAGAAGCTTCAAAGCACTTCCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CCA 72 bp | AGAGCGCTGATTGGTGCGTTTTTACAGAGTGGTGATTaGTGCATTTACAATCCTTTAGCTAGACACAGAGTG | + |
|
Preference number: 6 (lower is better) Translates to: RALIGAFLQSGD*CIYNPLARHRV Trigger: CACTCTGTGTCTAGCTAAAGGATTGTAAATGCACCAATCACCACTCTGTAAAAACGCACCAATCAGCGCTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS CAA 72 bp | GTTGTAAGAGGATCAGCTTCAATGATTGCTCTCAATTaGTCGTTGTCTACTTCCAATGGCTGGCCACTACAC | + |
|
Preference number: 6 (lower is better) Translates to: VVRGSASMIALN*SLSTSNGWPLH Trigger: GTGTAGTGGCCAGCCATTGGAAGTAGACAACGACAAATTGAGAGCAATCATTGAAGCTGATCCTCTTACAAC 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS TCA 72 bp | GTATCATGCCCTCCGTATTTCTTTTTGCCATTGTTCTaGGACTTCAGGGCTACAATTGACCTCCAGAAATTG | + |
|
Preference number: 6 (lower is better) Translates to: VSCPPYFFLPLF*DFRATIDLQKL Trigger: CAATTTCTGGAGGTCAATTGTAGCCCTGAAGTCTCAGAACAATGGCAAAAAGAAATACGGAGGGCATGATAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000433645.1 ENST00000436786.1 ENST00000669551.1 |
||
| CDS TCA 72 bp | TGTAGTTTTATAGCTTTGATTCTGGAAGAGACAAACTaGAGAAGTGGTAGTTGGTTGGTGAGAGGTCAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: CSFIALILEETN*RSGSWLVRGQV Trigger: CACCTGACCTCTCACCAACCAACTACCACTTCTTCAGTTTGTCTCTTCCAGAATCAAAGCTATAAAACTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS GCA 72 bp | TTCTCCTGTAGTTGTAAGAGGATCAGCTTCAATGATTaGTCTCAATTTGTCGTTGTCTACTTCCAATGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: FSCSCKRISFND*SQFVVVYFQWL Trigger: CAGCCATTGGAAGTAGACAACGACAAATTGAGAGCAATCATTGAAGCTGATCCTCTTACAACTACAGGAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS GCA 72 bp | GTGCTGATTGGTGCATTTTTCCAGAGTGCTGATTGGTaGATTTATAATCCTCTAGCCAGACAGAAAAGTTCT | + |
|
Preference number: 6 (lower is better) Translates to: VLIGAFFQSADW*IYNPLARQKSS Trigger: AGAACTTTTCTGTCTGGCTAGAGGATTATAAATGCACCAATCAGCACTCTGGAAAAATGCACCAATCAGCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS TCA 72 bp | TTTCCGATCTGCTTCAAATGCCAAACTACTATAGAATaGTTGATGGTGAGTTCCTTGGCAACTTCTCCTGTA | + |
|
Preference number: 6 (lower is better) Translates to: FPICFKCQTTIE*LMVSSLATSPV Trigger: TACAGGAGAAGTTGCCAAGGAACTCACCATCAATCATTCTATAGTAGTTTGGCATTTGAAGCAGATCGGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CCA 72 bp | AGAGTGCTGATTTGTGCATTTTTACAGAGTACTGAATaGTGCCTTTACAATCCTTTAGCTAGACACAGAGTG | + |
|
Preference number: 6 (lower is better) Translates to: RVLICAFLQSTE*CLYNPLARHRV Trigger: CACTCTGTGTCTAGCTAAAGGATTGTAAAGGCACCATTCAGTACTCTGTAAAAATGCACAAATCAGCACTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000669551.1 |
||
| CDS CAA 72 bp | CTCAGTCATATGGTAAAACTCGACTGCATAGGAATCTaGAGAATTTTAGTCTGCCAAATGTATCATGCCCTC | + |
|
Preference number: 6 (lower is better) Translates to: LSHMVKLDCIGI*RILVCQMYHAL Trigger: GAGGGCATGATACATTTGGCAGACTAAAATTCTCAAGATTCCTATGCAGTCGAGTTTTACCATATGACTGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CAA 90 bp | TTGTTGGAACTCAGTCATATGGTAAAACTCGACTGCATAGGAATCTaGAGAATTTTAGTCTGCCAAATGTATCATGCCCTCCGTATTTCT | + |
|
Preference number: 6 (lower is better) Translates to: LLELSHMVKLDCIGI*RILVCQMYHALRIS Trigger: AGAAATACGGAGGGCATGATACATTTGGCAGACTAAAATTCTCAAGATTCCTATGCAGTCGAGTTTTACCATATGACTGAGTTCCAACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS TCA 72 bp | ACAATCATTTGGTGGTTACTGTCTAGAGGTCTCACCTaGAGATGTGGAAGTTCCACTAAAACAAATGTATCA | + |
|
Preference number: 6 (lower is better) Translates to: TIIWWLLSRGLT*RCGSSTKTNVS Trigger: TGATACATTTGTTTTAGTGGAACTTCCACATCTTCAGGTGAGACCTCTAGACAGTAACCACCAAATGATTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000433645.1 ENST00000669551.1 |
||
| CDS GCA 72 bp | TCTTTGTTGGAACTCAGTCATATGGTAAAACTCGACTaGATAGGAATCTTGAGAATTTTAGTCTGCCAAATG | + |
|
Preference number: 6 (lower is better) Translates to: SLLELSHMVKLD*IGILRILVCQM Trigger: CATTTGGCAGACTAAAATTCTCAAGATTCCTATGCAGTCGAGTTTTACCATATGACTGAGTTCCAACAAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CAA 72 bp | GTTTTGAGAGTTGTCTCTGCTGCTTTACGACCCATTTaGAACCCGAATAACAAAATTGCTCAAATTTGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: VLRVVSAALRPI*NPNNKIAQICF Trigger: AAAGCAAATTTGAGCAATTTTGTTATTCGGGTTCAAAATGGGTCGTAAAGCAGCAGAGACAACTCTCAAAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS CCA 72 bp | TCTAACATCATTTCCATAGTCTGCTTCTTAAAGCCCTaGGTCAAAAATGATGCTTATACAATCTTCTACTCA | + |
|
Preference number: 6 (lower is better) Translates to: SNIISIVCFLKP*VKNDAYTIFYS Trigger: TGAGTAGAAGATTGTATAAGCATCATTTTTGACCCAGGGCTTTAAGAAGCAGACTATGGAAATGATGTTAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||
| CDS TCA 72 bp | TTCCATAGTCTGCTTCTTAAAGCCCTGGGTCAAAAATaGTGCTTATACAATCTTCTACTCATATTTCTTTGT | + |
|
Preference number: 6 (lower is better) Translates to: FHSLLLKALGQK*CLYNLLLIFLC Trigger: ACAAAGAAATATGAGTAGAAGATTGTATAAGCATCATTTTTGACCCAGGGCTTTAAGAAGCAGACTATGGAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000436786.1 |
||