Pregenerated sensors for LINC01237 (Homo sapiens)
Ensembl gene IDs: ENSG00000233806Ensembl transcript IDs: ENST00000415434.5, ENST00000429947.1, ENST00000430555.5, ENST00000457686.5, ENST00000626848.2, ENST00000627094.1, ENST00000630106.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCCGACTGTGACCTGGCCGCGCAGCGGCCTCCTCCGCACCAGGGCTaGCCCAGTGTGGGGTCCAGGTGGGCTCTGGTAGGCCCCCGGGCA | + |
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Preference number: 5 (lower is better) Translates to: ADCDLAAQRPPPHQG*PSVGSRWALVGPRA Trigger: TGCCCGGGGGCCTACCAGAGCCCACCTGGACCCCACACTGGGTCAGCCCTGGTGCGGAGGAGGCCGCTGCGCGGCCAGGTCACAGTCGGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000457686.5 ENST00000630106.2 |
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| CDS TCA 90 bp | ACTGTGACCTGGCCGCGCCTACAGCGGCCTCCTCCGCACCAGGGCTaGCCCAGTGTGGGGTCCAGGTGGGCTCTGGTAGGCCCCCGGGCA | + |
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Preference number: 5 (lower is better) Translates to: TVTWPRLQRPPPHQG*PSVGSRWALVGPRA Trigger: TGCCCGGGGGCCTACCAGAGCCCACCTGGACCCCACACTGGGTCAGCCCTGGTGCGGAGGAGGCCGCTGTAGGCGCGGCCAGGTCACAGT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000415434.5 ENST00000430555.5 ENST00000626848.2 |
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| CDS CCA 90 bp | AACGCCTCACTGAGATCTGCCAAACTTCTGGTGCCGACTGTGACCTaGCCGCGCAGCGGCCTCCTCCGCACCAGGGCTGACCCAGTGTGG | + |
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Preference number: 5 (lower is better) Translates to: NASLRSAKLLVPTVT*PRSGLLRTRADPVW Trigger: CCACACTGGGTCAGCCCTGGTGCGGAGGAGGCCGCTGCGCGGCCAGGTCACAGTCGGCACCAGAAGTTTGGCAGATCTCAGTGAGGCGTT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000457686.5 ENST00000630106.2 |
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| CDS CCA 90 bp | GGGACAGTGGCAGGACCTGTGCCAGCGTCTGCCCTTGCTCCTGGCTaGATTCAGTTACTTGGCTGGGCCCCAGTGAAGGCGCAGAGGGCA | + |
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Preference number: 5 (lower is better) Translates to: GTVAGPVPASALAPG*IQLLGWAPVKAQRA Trigger: TGCCCTCTGCGCCTTCACTGGGGCCCAGCCAAGTAACTGAATCCAGCCAGGAGCAAGGGCAGACGCTGGCACAGGTCCTGCCACTGTCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429947.1 ENST00000627094.1 |
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| CDS CCA 90 bp | ACCTGTGCCAGCGTCTGCCCTTGCTCCTGGCTGGATTCAGTTACTTaGCTGGGCCCCAGTGAAGGCGCAGAGGGCACCACCACCTGCACA | + |
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Preference number: 5 (lower is better) Translates to: TCASVCPCSWLDSVT*LGPSEGAEGTTTCT Trigger: TGTGCAGGTGGTGGTGCCCTCTGCGCCTTCACTGGGGCCCAGCCAAGTAACTGAATCCAGCCAGGAGCAAGGGCAGACGCTGGCACAGGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429947.1 ENST00000627094.1 |
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| CDS CCA 90 bp | GTTGGGGACAGTGGCAGGACCTGTGCCAGCGTCTGCCCTTGCTCCTaGCTGGATTCAGTTACTTGGCTGGGCCCCAGTGAAGGCGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: VGDSGRTCASVCPCS*LDSVTWLGPSEGAE Trigger: CTCTGCGCCTTCACTGGGGCCCAGCCAAGTAACTGAATCCAGCCAGGAGCAAGGGCAGACGCTGGCACAGGTCCTGCCACTGTCCCCAAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000429947.1 ENST00000627094.1 |
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| CDS TCA 90 bp | CCAGCCAGAGGCGCCCAGAAAGACTATGCCAGGCCTCAGCTGTGTTaGAACCCAGGTTGGGGACAGTGGCAGGACCTGTGCCAGCGTCTG | + |
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Preference number: 5 (lower is better) Translates to: PARGAQKDYARPQLC*NPGWGQWQDLCQRL Trigger: CAGACGCTGGCACAGGTCCTGCCACTGTCCCCAACCTGGGTTTCAACACAGCTGAGGCCTGGCATAGTCTTTCTGGGCGCCTCTGGCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429947.1 ENST00000627094.1 |
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| CDS GCA 90 bp | CCGCGCCTTTCAGACCGAGCCAGCCAGAGGCGCCCAGAAAGACTATaGCAGGCCTCAGCTGTGTTGAAACCCAGGTTGGGGACAGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: PRLSDRASQRRPERL*QASAVLKPRLGTVA Trigger: TGCCACTGTCCCCAACCTGGGTTTCAACACAGCTGAGGCCTGGCATAGTCTTTCTGGGCGCCTCTGGCTGGCTCGGTCTGAAAGGCGCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429947.1 ENST00000627094.1 |
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| CDS TCA 90 bp | CAAGGCAGGCAGGTCAGCTGCTGCACTGCACACCACAGCGGCTGGTaGACTCTGCACACAGCGGTGGGCCGTCAACTGAAACCACAACAG | + |
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Preference number: 5 (lower is better) Translates to: QGRQVSCCTAHHSGW*TLHTAVGRQLKPQQ Trigger: CTGTTGTGGTTTCAGTTGACGGCCCACCGCTGTGTGCAGAGTTCACCAGCCGCTGTGGTGTGCAGTGCAGCAGCTGACCTGCCTGCCTTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000430555.5 ENST00000457686.5 |
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| CDS TCA 90 bp | AAGGCATTCCGTGGAGAACAGCAGTGGATTATCAACCAGGATGTGTaGGCCATGACAGACCACAGGCATTCCCTGGGAGGCTGGGGCAAG | + |
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Preference number: 5 (lower is better) Translates to: KAFRGEQQWIINQDV*AMTDHRHSLGGWGK Trigger: CTTGCCCCAGCCTCCCAGGGAATGCCTGTGGTCTGTCATGGCTCACACATCCTGGTTGATAATCCACTGCTGTTCTCCACGGAATGCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000430555.5 ENST00000457686.5 |
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| CDS TCA 90 bp | GAGGGAGGATGTGGCCCACCCAGCACTGTTGCTGTGCATTCTTGGTaGGAACACCTAAGACGTCCCCTCAATGGGATTAGAAAACCACAA | + |
|
Preference number: 5 (lower is better) Translates to: EGGCGPPSTVAVHSW*EHLRRPLNGIRKPQ Trigger: TTGTGGTTTTCTAATCCCATTGAGGGGACGTCTTAGGTGTTCTCACCAAGAATGCACAGCAACAGTGCTGGGTGGGCCACATCCTCCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000430555.5 |
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| CDS CCA 90 bp | AAACCACAACAGGCAGCGAGCAGCTCTCAAAATGAAGGCATTCCGTaGAGAACAGCAGTGGATTATCAACCAGGATGTGTGAGCCATGAC | + |
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Preference number: 5 (lower is better) Translates to: KPQQAASSSQNEGIP*RTAVDYQPGCVSHD Trigger: GTCATGGCTCACACATCCTGGTTGATAATCCACTGCTGTTCTCCACGGAATGCCTTCATTTTGAGAGCTGCTCGCTGCCTGTTGTGGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000430555.5 ENST00000457686.5 |
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| CDS CCA 72 bp | CTGAGATCTGCCAAACTTCTGGTGCCGACTGTGACCTaGCCGCGCAGCGGCCTCCTCCGCACCAGGGCTGAC | + |
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Preference number: 6 (lower is better) Translates to: LRSAKLLVPTVT*PRSGLLRTRAD Trigger: GTCAGCCCTGGTGCGGAGGAGGCCGCTGCGCGGCCAGGTCACAGTCGGCACCAGAAGTTTGGCAGATCTCAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000457686.5 ENST00000630106.2 |
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| CDS GCA 72 bp | TCCAGGTGGGCTCTGGTAGGCCCCCGGGCAGAGCTGTaGCCCGCGTCACTGAGGATGCACAGAGAAAAAGGA | + |
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Preference number: 6 (lower is better) Translates to: SRWALVGPRAEL*PASLRMHREKG Trigger: TCCTTTTTCTCTGTGCATCCTCAGTGACGCGGGGCACAGCTCTGCCCGGGGGCCTACCAGAGCCCACCTGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000430555.5 ENST00000626848.2 |
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| CDS CAA 90 bp | GCCAGCCAGAGGCGCCCAGAAAGACTATGCCAGGCCTCAGCTGTGTaGAAACCCAGGTTGGGGACAGTGGCAGGACCTGTGCCAGCGTCT | + |
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Preference number: 6 (lower is better) Translates to: ASQRRPERLCQASAV*KPRLGTVAGPVPAS Trigger: AGACGCTGGCACAGGTCCTGCCACTGTCCCCAACCTGGGTTTCAACACAGCTGAGGCCTGGCATAGTCTTTCTGGGCGCCTCTGGCTGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429947.1 ENST00000627094.1 |
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| CDS CAA 90 bp | CGCCCAGAAAGACTATGCCAGGCCTCAGCTGTGTTGAAACCCAGGTaGGGGACAGTGGCAGGACCTGTGCCAGCGTCTGCCCTTGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: RPERLCQASAVLKPR*GTVAGPVPASALAP Trigger: AGGAGCAAGGGCAGACGCTGGCACAGGTCCTGCCACTGTCCCCAACCTGGGTTTCAACACAGCTGAGGCCTGGCATAGTCTTTCTGGGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429947.1 ENST00000627094.1 |
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| CDS TCA 72 bp | GGCGCCCAGAAAGACTATGCCAGGCCTCAGCTGTGTTaGAACCCAGGTTGGGGACAGTGGCAGGACCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: GAQKDYARPQLC*NPGWGQWQDLC Trigger: GCACAGGTCCTGCCACTGTCCCCAACCTGGGTTTCAACACAGCTGAGGCCTGGCATAGTCTTTCTGGGCGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429947.1 ENST00000627094.1 |
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| CDS GCA 72 bp | TCAGACCGAGCCAGCCAGAGGCGCCCAGAAAGACTATaGCAGGCCTCAGCTGTGTTGAAACCCAGGTTGGGG | + |
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Preference number: 6 (lower is better) Translates to: SDRASQRRPERL*QASAVLKPRLG Trigger: CCCCAACCTGGGTTTCAACACAGCTGAGGCCTGGCATAGTCTTTCTGGGCGCCTCTGGCTGGCTCGGTCTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000429947.1 ENST00000627094.1 |
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| CDS CAA 72 bp | AGGCGCCCAGAAAGACTATGCCAGGCCTCAGCTGTGTaGAAACCCAGGTTGGGGACAGTGGCAGGACCTGTG | + |
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Preference number: 6 (lower is better) Translates to: RRPERLCQASAV*KPRLGTVAGPV Trigger: CACAGGTCCTGCCACTGTCCCCAACCTGGGTTTCAACACAGCTGAGGCCTGGCATAGTCTTTCTGGGCGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429947.1 ENST00000627094.1 |
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| CDS TCA 72 bp | GCTGGTGAACTCTGCACACAGCGGTGGGCCGTCAACTaGAACCACAACAGGCAGCGAGCAGCTCTCAAAATG | + |
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Preference number: 6 (lower is better) Translates to: AGELCTQRWAVN*NHNRQRAALKM Trigger: CATTTTGAGAGCTGCTCGCTGCCTGTTGTGGTTTCAGTTGACGGCCCACCGCTGTGTGCAGAGTTCACCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000430555.5 ENST00000457686.5 |
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| CDS TCA 72 bp | CGTGGAGAACAGCAGTGGATTATCAACCAGGATGTGTaGGCCATGACAGACCACAGGCATTCCCTGGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: RGEQQWIINQDV*AMTDHRHSLGG Trigger: GCCTCCCAGGGAATGCCTGTGGTCTGTCATGGCTCACACATCCTGGTTGATAATCCACTGCTGTTCTCCACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000430555.5 ENST00000457686.5 |
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| CDS CCA 72 bp | CAGGCAGCGAGCAGCTCTCAAAATGAAGGCATTCCGTaGAGAACAGCAGTGGATTATCAACCAGGATGTGTG | + |
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Preference number: 6 (lower is better) Translates to: QAASSSQNEGIP*RTAVDYQPGCV Trigger: CACACATCCTGGTTGATAATCCACTGCTGTTCTCCACGGAATGCCTTCATTTTGAGAGCTGCTCGCTGCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000430555.5 ENST00000457686.5 |
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| CDS TCA 72 bp | ACTGAAACCACAACAGGCAGCGAGCAGCTCTCAAAATaGAGGCATTCCGTGGAGAACAGCAGTGGATTATCA | + |
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Preference number: 6 (lower is better) Translates to: TETTTGSEQLSK*RHSVENSSGLS Trigger: TGATAATCCACTGCTGTTCTCCACGGAATGCCTTCATTTTGAGAGCTGCTCGCTGCCTGTTGTGGTTTCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000430555.5 ENST00000457686.5 |
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