Pregenerated sensors for LINC01235 (Homo sapiens)
Ensembl gene IDs: ENSG00000270547Ensembl transcript IDs: ENST00000604724.6, ENST00000605459.2, ENST00000655038.1, ENST00000661860.1, ENST00000663740.1, ENST00000668698.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTGGTCCCTGGATGGCACAGAGCACTGTGCCTGCAGCAAAGTGCCTaGGCTTTCCTGGGGCTGAGCGGGCGGGGTCTTTGCCACCAGACA | + |
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Preference number: 5 (lower is better) Translates to: LVPGWHRALCLQQSA*AFLGLSGRGLCHQT Trigger: TGTCTGGTGGCAAAGACCCCGCCCGCTCAGCCCCAGGAAAGCTCAGGCACTTTGCTGCAGGCACAGTGCTCTGTGCCATCCAGGGACCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000604724.6 |
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| CDS GCA 90 bp | GGTGGGCAAACAGCTGTCTCCACAGCTGAGACCACTGGAGCTGCTTaGGCTGCTCCAGTAACTCGAGAGCACACGGCTGGTCCCTGGATG | + |
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Preference number: 5 (lower is better) Translates to: GGQTAVSTAETTGAA*AAPVTREHTAGPWM Trigger: CATCCAGGGACCAGCCGTGTGCTCTCGAGTTACTGGAGCAGCGCAAGCAGCTCCAGTGGTCTCAGCTGTGGAGACAGCTGTTTGCCCACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000604724.6 ENST00000661860.1 |
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| CDS CCA 90 bp | CACTGGAGCTGCTTGCGCTGCTCCAGTAACTCGAGAGCACACGGCTaGTCCCTGGATGGCACAGAGCACTGTGCCTGCAGCAAAGTGCCT | + |
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Preference number: 5 (lower is better) Translates to: HWSCLRCSSNSRAHG*SLDGTEHCACSKVP Trigger: AGGCACTTTGCTGCAGGCACAGTGCTCTGTGCCATCCAGGGACCAGCCGTGTGCTCTCGAGTTACTGGAGCAGCGCAAGCAGCTCCAGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604724.6 |
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| CDS CCA 90 bp | GCTGCTTGCGCTGCTCCAGTAACTCGAGAGCACACGGCTGGTCCCTaGATGGCACAGAGCACTGTGCCTGCAGCAAAGTGCCTGAGCTTT | + |
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Preference number: 5 (lower is better) Translates to: AACAAPVTREHTAGP*MAQSTVPAAKCLSF Trigger: AAAGCTCAGGCACTTTGCTGCAGGCACAGTGCTCTGTGCCATCCAGGGACCAGCCGTGTGCTCTCGAGTTACTGGAGCAGCGCAAGCAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604724.6 |
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| CDS TCA 90 bp | CATTTCTGCCATCGCAGACGGTGGGCAAACAGCTGTCTCCACAGCTaGGACCACTGGAGCTGCTTGCGCTGCTCCAGTAACTCGAGAGCA | + |
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Preference number: 5 (lower is better) Translates to: HFCHRRRWANSCLHS*DHWSCLRCSSNSRA Trigger: TGCTCTCGAGTTACTGGAGCAGCGCAAGCAGCTCCAGTGGTCTCAGCTGTGGAGACAGCTGTTTGCCCACCGTCTGCGATGGCAGAAATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000604724.6 ENST00000661860.1 |
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| CDS GCA 90 bp | GCGTTGACCTGTGAGAGACCCTTCGGCTTCCAGGGCCAGAGGTCTTaGATTGGCTCTGCTTTGCTCTCTGTTCTCCTGGCCATCCTCAGA | + |
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Preference number: 5 (lower is better) Translates to: ALTCERPFGFQGQRS*IGSALLSVLLAILR Trigger: TCTGAGGATGGCCAGGAGAACAGAGAGCAAAGCAGAGCCAATGCAAGACCTCTGGCCCTGGAAGCCGAAGGGTCTCTCACAGGTCAACGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000604724.6 ENST00000605459.2 ENST00000655038.1 ENST00000668698.1 |
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| CDS GCA 90 bp | GTTCTTACCCTTCGGCTTCCAGGGCCAGAGGTCTTGCATTGGCTCTaGTTTGCTCTCTGTTCTCCTGGCCATCCTCAGACCCAGAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: VLTLRLPGPEVLHWL*FALCSPGHPQTQSH Trigger: GTGGCTCTGGGTCTGAGGATGGCCAGGAGAACAGAGAGCAAAGCAGAGCCAATGCAAGACCTCTGGCCCTGGAAGCCGAAGGGTAAGAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661860.1 ENST00000663740.1 |
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| CDS TCA 90 bp | ACAGAGCACTGTGCCTGCAGCAAAGTGCCTGAGCTTTCCTGGGGCTaGGCGGGCGGGGTCTTTGCCACCAGACACAATAAGCATGTGAAA | + |
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Preference number: 5 (lower is better) Translates to: TEHCACSKVPELSWG*AGGVFATRHNKHVK Trigger: TTTCACATGCTTATTGTGTCTGGTGGCAAAGACCCCGCCCGCTCAGCCCCAGGAAAGCTCAGGCACTTTGCTGCAGGCACAGTGCTCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000604724.6 |
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| CDS GCA 90 bp | GTTCTCCTGGCCATCCTCAGACCCAGAGCCACAGGTAAGGTAGGCTaGTTCTTAGCCTTTCTCTTTTCTCCAGCAGACTCGGGGCCCAAA | + |
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Preference number: 5 (lower is better) Translates to: VLLAILRPRATGKVG*FLAFLFSPADSGPK Trigger: TTTGGGCCCCGAGTCTGCTGGAGAAAAGAGAAAGGCTAAGAAGCAGCCTACCTTACCTGTGGCTCTGGGTCTGAGGATGGCCAGGAGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000604724.6 ENST00000605459.2 ENST00000655038.1 ENST00000661860.1 ENST00000663740.1 ENST00000668698.1 |
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| CDS GCA 90 bp | GGTTTCTCTCTGTTCTTACCCTTCGGCTTCCAGGGCCAGAGGTCTTaGATTGGCTCTGCTTTGCTCTCTGTTCTCCTGGCCATCCTCAGA | + |
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Preference number: 5 (lower is better) Translates to: GFSLFLPFGFQGQRS*IGSALLSVLLAILR Trigger: TCTGAGGATGGCCAGGAGAACAGAGAGCAAAGCAGAGCCAATGCAAGACCTCTGGCCCTGGAAGCCGAAGGGTAAGAACAGAGAGAAACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661860.1 ENST00000663740.1 |
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| CDS TCA 90 bp | CCTGTCCAACCTTGTAGAATCTATCACATCTGCCAGGATCACAACTaGAGGTGGTATGTCTCCAGGCCATCAATGCTGTTGTATGTATTT | + |
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Preference number: 5 (lower is better) Translates to: PVQPCRIYHICQDHN*RWYVSRPSMLLYVF Trigger: AAATACATACAACAGCATTGATGGCCTGGAGACATACCACCTTCAGTTGTGATCCTGGCAGATGTGATAGATTCTACAAGGTTGGACAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604724.6 |
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| CDS TCA 90 bp | CAGGTTGCCTGTGAAGTACTGTGTATCCATAAACCTCCCACAATCTaGTATGTTTGGCAGAGAAAATCAGGGAAAAGGCACGTTGATTGT | + |
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Preference number: 5 (lower is better) Translates to: QVACEVLCIHKPPTI*YVWQRKSGKRHVDC Trigger: ACAATCAACGTGCCTTTTCCCTGATTTTCTCTGCCAAACATATCAGATTGTGGGAGGTTTATGGATACACAGTACTTCACAGGCAACCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000605459.2 ENST00000663740.1 ENST00000668698.1 |
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| CDS CCA 90 bp | GTGCCTAATTTACTCTCAGGGAGGAACAGAATAGTGGACAGGCTCTaGATGATGAATTACACATCAAGATGCATTTTCCCAAGTGAATTG | + |
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Preference number: 5 (lower is better) Translates to: VPNLLSGRNRIVDRL*MMNYTSRCIFPSEL Trigger: CAATTCACTTGGGAAAATGCATCTTGATGTGTAATTCATCATCCAGAGCCTGTCCACTATTCTGTTCCTCCCTGAGAGTAAATTAGGCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000604724.6 |
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| CDS CCA 72 bp | TGCTTGCGCTGCTCCAGTAACTCGAGAGCACACGGCTaGTCCCTGGATGGCACAGAGCACTGTGCCTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: CLRCSSNSRAHG*SLDGTEHCACS Trigger: GCTGCAGGCACAGTGCTCTGTGCCATCCAGGGACCAGCCGTGTGCTCTCGAGTTACTGGAGCAGCGCAAGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604724.6 |
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| CDS CCA 72 bp | GCTGCTCCAGTAACTCGAGAGCACACGGCTGGTCCCTaGATGGCACAGAGCACTGTGCCTGCAGCAAAGTGC | + |
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Preference number: 6 (lower is better) Translates to: AAPVTREHTAGP*MAQSTVPAAKC Trigger: GCACTTTGCTGCAGGCACAGTGCTCTGTGCCATCCAGGGACCAGCCGTGTGCTCTCGAGTTACTGGAGCAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604724.6 |
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| CDS TCA 72 bp | TGTGCCTGCAGCAAAGTGCCTGAGCTTTCCTGGGGCTaGGCGGGCGGGGTCTTTGCCACCAGACACAATAAG | + |
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Preference number: 6 (lower is better) Translates to: CACSKVPELSWG*AGGVFATRHNK Trigger: CTTATTGTGTCTGGTGGCAAAGACCCCGCCCGCTCAGCCCCAGGAAAGCTCAGGCACTTTGCTGCAGGCACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000604724.6 |
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| CDS CAA 90 bp | CGAACTGGGTGTGCTAGTGAAGATGATGATGGAGTAGATCCTGCGTaGACCTGTGAGAGACCCTTCGGCTTCCAGGGCCAGAGGTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: RTGCASEDDDGVDPA*TCERPFGFQGQRSC Trigger: GCAAGACCTCTGGCCCTGGAAGCCGAAGGGTCTCTCACAGGTCAACGCAGGATCTACTCCATCATCATCTTCACTAGCACACCCAGTTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000604724.6 ENST00000605459.2 ENST00000655038.1 ENST00000668698.1 |
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| CDS CAA 90 bp | TCTCTCTGTTCTTACCCTTCGGCTTCCAGGGCCAGAGGTCTTGCATaGGCTCTGCTTTGCTCTCTGTTCTCCTGGCCATCCTCAGACCCA | + |
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Preference number: 6 (lower is better) Translates to: SLCSYPSASRARGLA*ALLCSLFSWPSSDP Trigger: TGGGTCTGAGGATGGCCAGGAGAACAGAGAGCAAAGCAGAGCCAATGCAAGACCTCTGGCCCTGGAAGCCGAAGGGTAAGAACAGAGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661860.1 ENST00000663740.1 |
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| CDS GCA 72 bp | GCCATCCTCAGACCCAGAGCCACAGGTAAGGTAGGCTaGTTCTTAGCCTTTCTCTTTTCTCCAGCAGACTCG | + |
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Preference number: 6 (lower is better) Translates to: AILRPRATGKVG*FLAFLFSPADS Trigger: CGAGTCTGCTGGAGAAAAGAGAAAGGCTAAGAAGCAGCCTACCTTACCTGTGGCTCTGGGTCTGAGGATGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000604724.6 ENST00000605459.2 ENST00000655038.1 ENST00000661860.1 ENST00000663740.1 ENST00000668698.1 |
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| CDS CAA 72 bp | TGTGCTAGTGAAGATGATGATGGAGTAGATCCTGCGTaGACCTGTGAGAGACCCTTCGGCTTCCAGGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: CASEDDDGVDPA*TCERPFGFQGQ Trigger: CTGGCCCTGGAAGCCGAAGGGTCTCTCACAGGTCAACGCAGGATCTACTCCATCATCATCTTCACTAGCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000604724.6 ENST00000605459.2 ENST00000655038.1 ENST00000668698.1 |
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| CDS CAA 90 bp | CGAACTGGGTGTGCTAGTGAAGATGATGATGGAGTAGATCCTGCGTaGACCTGTGAGAGACCTTCTTTCAGGAGGGCTTTATTTATAGCC | + |
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Preference number: 6 (lower is better) Translates to: RTGCASEDDDGVDPA*TCERPSFRRALFIA Trigger: GGCTATAAATAAAGCCCTCCTGAAAGAAGGTCTCTCACAGGTCAACGCAGGATCTACTCCATCATCATCTTCACTAGCACACCCAGTTCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661860.1 ENST00000663740.1 |
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| CDS TCA 72 bp | CCTTGTAGAATCTATCACATCTGCCAGGATCACAACTaGAGGTGGTATGTCTCCAGGCCATCAATGCTGTTG | + |
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Preference number: 6 (lower is better) Translates to: PCRIYHICQDHN*RWYVSRPSMLL Trigger: CAACAGCATTGATGGCCTGGAGACATACCACCTTCAGTTGTGATCCTGGCAGATGTGATAGATTCTACAAGG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000604724.6 |
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| CDS CAA 72 bp | TGTGCTAGTGAAGATGATGATGGAGTAGATCCTGCGTaGACCTGTGAGAGACCTTCTTTCAGGAGGGCTTTA | + |
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Preference number: 6 (lower is better) Translates to: CASEDDDGVDPA*TCERPSFRRAL Trigger: TAAAGCCCTCCTGAAAGAAGGTCTCTCACAGGTCAACGCAGGATCTACTCCATCATCATCTTCACTAGCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000661860.1 ENST00000663740.1 |
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| CDS CAA 72 bp | GCATGGTTTGCAGGTGAAGGTTGTCTGAGCTTTAATTaGCTGTTTGATTCGCCCCAGGAATTTCAGGTGTTG | + |
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Preference number: 6 (lower is better) Translates to: AWFAGEGCLSFN*LFDSPQEFQVL Trigger: CAACACCTGAAATTCCTGGGGCGAATCAAACAGCAAATTAAAGCTCAGACAACCTTCACCTGCAAACCATGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668698.1 |
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| CDS TCA 72 bp | CCTTATACTGTGCATGGTTTGCAGGTGAAGGTTGTCTaGGCTTTAATTTGCTGTTTGATTCGCCCCAGGAAT | + |
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Preference number: 6 (lower is better) Translates to: PYTVHGLQVKVV*ALICCLIRPRN Trigger: ATTCCTGGGGCGAATCAAACAGCAAATTAAAGCTCAGACAACCTTCACCTGCAAACCATGCACAGTATAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668698.1 |
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| CDS GCA 72 bp | GTGGACAGGCTCTGGATGATGAATTACACATCAAGATaGATTTTCCCAAGTGAATTGGGCTCAATGTTGTCT | + |
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Preference number: 6 (lower is better) Translates to: VDRLWMMNYTSR*IFPSELGSMLS Trigger: AGACAACATTGAGCCCAATTCACTTGGGAAAATGCATCTTGATGTGTAATTCATCATCCAGAGCCTGTCCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000604724.6 |
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| CDS CCA 72 bp | TTACTCTCAGGGAGGAACAGAATAGTGGACAGGCTCTaGATGATGAATTACACATCAAGATGCATTTTCCCA | + |
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Preference number: 6 (lower is better) Translates to: LLSGRNRIVDRL*MMNYTSRCIFP Trigger: TGGGAAAATGCATCTTGATGTGTAATTCATCATCCAGAGCCTGTCCACTATTCTGTTCCTCCCTGAGAGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000604724.6 |
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| CDS TCA 72 bp | TGTGAAGTACTGTGTATCCATAAACCTCCCACAATCTaGTATGTTTGGCAGAGAAAATCAGGGAAAAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: CEVLCIHKPPTI*YVWQRKSGKRH Trigger: GTGCCTTTTCCCTGATTTTCTCTGCCAAACATATCAGATTGTGGGAGGTTTATGGATACACAGTACTTCACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000605459.2 ENST00000663740.1 ENST00000668698.1 |
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| CDS CAA 72 bp | AGGGCAAGGCAAACTCAGTTACATAAAATAGGACTATaGGTGATAAAATGCTGGCCAAGGCAACTGAATGAA | + |
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Preference number: 6 (lower is better) Translates to: RARQTQLHKIGL*VIKCWPRQLNE Trigger: TTCATTCAGTTGCCTTGGCCAGCATTTTATCACCAATAGTCCTATTTTATGTAACTGAGTTTGCCTTGCCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000604724.6 |
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| CDS CCA 72 bp | CCAGAAAACATTAAAATGAGTTCCTTATACTGTGCATaGTTTGCAGGTGAAGGTTGTCTGAGCTTTAATTTG | + |
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Preference number: 6 (lower is better) Translates to: PENIKMSSLYCA*FAGEGCLSFNL Trigger: CAAATTAAAGCTCAGACAACCTTCACCTGCAAACCATGCACAGTATAAGGAACTCATTTTAATGTTTTCTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668698.1 |
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| CDS TCA 72 bp | GGAGTTATTTTTGAATCCTGGGGCTCTGAACTCATGTaGTCCTTACTTCCAAATAACTTTAAGCAATTGAAA | + |
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Preference number: 6 (lower is better) Translates to: GVIFESWGSELM*SLLPNNFKQLK Trigger: TTTCAATTGCTTAAAGTTATTTGGAAGTAAGGATCACATGAGTTCAGAGCCCCAGGATTCAAAAATAACTCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000604724.6 ENST00000605459.2 ENST00000655038.1 ENST00000661860.1 ENST00000663740.1 ENST00000668698.1 |
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| CDS TCA 72 bp | AAACAATATAAACTTTTTGAGGTCACCAAGGTACCATaGAGTAAATTATTGCCCCACAGTTCTAAATGGTAC | + |
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Preference number: 6 (lower is better) Translates to: KQYKLFEVTKVP*SKLLPHSSKWY Trigger: GTACCATTTAGAACTGTGGGGCAATAATTTACTTCATGGTACCTTGGTGACCTCAAAAAGTTTATATTGTTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000604724.6 |
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