Pregenerated sensors for LINC01228 (Homo sapiens)
Ensembl gene IDs: ENSG00000261082Ensembl transcript IDs: ENST00000567966.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CATGTTCCTTTCCTCTCCAGGGTTGCCATCACCAACTCCAAGTCTTaGAGCCCCTCTTCCCTTCAGTCTGGCTGCCACCTTCTTCATTGC | + |
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Preference number: 5 (lower is better) Translates to: HVPFLSRVAITNSKS*SPSSLQSGCHLLHC Trigger: GCAATGAAGAAGGTGGCAGCCAGACTGAAGGGAAGAGGGGCTGCAAGACTTGGAGTTGGTGATGGCAACCCTGGAGAGGAAAGGAACATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000567966.1 |
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| CDS GCA 72 bp | CCAACCTCTTGGCCATGTTCCTTTCCTCTCCAGGGTTaGCATCACCAACTCCAAGTCTTGCAGCCCCTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: PTSWPCSFPLQG*HHQLQVLQPLF Trigger: GAAGAGGGGCTGCAAGACTTGGAGTTGGTGATGGCAACCCTGGAGAGGAAAGGAACATGGCCAAGAGGTTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000567966.1 |
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| CDS CAA 72 bp | CCCAACCTCTTGGCCATGTTCCTTTCCTCTCCAGGGTaGCCATCACCAACTCCAAGTCTTGCAGCCCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: PNLLAMFLSSPG*PSPTPSLAAPL Trigger: AAGAGGGGCTGCAAGACTTGGAGTTGGTGATGGCAACCCTGGAGAGGAAAGGAACATGGCCAAGAGGTTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000567966.1 |
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| CDS CAA 90 bp | CCATGTTCCTTTCCTCTCCAGGGTTGCCATCACCAACTCCAAGTCTaGCAGCCCCTCTTCCCTTCAGTCTGGCTGCCACCTTCTTCATTG | + |
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Preference number: 6 (lower is better) Translates to: PCSFPLQGCHHQLQV*QPLFPSVWLPPSSL Trigger: CAATGAAGAAGGTGGCAGCCAGACTGAAGGGAAGAGGGGCTGCAAGACTTGGAGTTGGTGATGGCAACCCTGGAGAGGAAAGGAACATGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000567966.1 |
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| CDS TCA 72 bp | TGGGCTGCTTCTGGGTTCTTCCTTCTTGATCTAGCATaGATCCCAACCTCTTGGCCATGTTCCTTTCCTCTC | + |
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Preference number: 6 (lower is better) Translates to: WAASGFFLLDLA*IPTSWPCSFPL Trigger: GAGAGGAAAGGAACATGGCCAAGAGGTTGGGATTCATGCTAGATCAAGAAGGAAGAACCCAGAAGCAGCCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000567966.1 |
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