Pregenerated sensors for LINC01221 (Homo sapiens)
Ensembl gene IDs: ENSG00000235492Ensembl transcript IDs: ENST00000432488.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCTGTGTATCTGGAATCTGGGAAGAGCTTAGCTGAGTCCTCTGTTTaGGGTGAACAAGATTGCAAAAAGGATTTGCCTGGAAGTACAGTC | + |
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Preference number: 5 (lower is better) Translates to: SVYLESGKSLAESSV*GEQDCKKDLPGSTV Trigger: GACTGTACTTCCAGGCAAATCCTTTTTGCAATCTTGTTCACCCCAAACAGAGGACTCAGCTAAGCTCTTCCCAGATTCCAGATACACAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000432488.1 |
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| CDS CCA 72 bp | AGGACAGAGAATTTCAGTGTCTTGTTGATGTTCAACTaGAGACCATCCTCAGCTCCTAGGGGCCACCCTAAG | + |
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Preference number: 6 (lower is better) Translates to: RTENFSVLLMFN*RPSSAPRGHPK Trigger: CTTAGGGTGGCCCCTAGGAGCTGAGGATGGTCTCCAGTTGAACATCAACAAGACACTGAAATTCTCTGTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432488.1 |
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| CDS CCA 72 bp | CTGGAATCTGGGAAGAGCTTAGCTGAGTCCTCTGTTTaGGGTGAACAAGATTGCAAAAAGGATTTGCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: LESGKSLAESSV*GEQDCKKDLPG Trigger: TCCAGGCAAATCCTTTTTGCAATCTTGTTCACCCCAAACAGAGGACTCAGCTAAGCTCTTCCCAGATTCCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000432488.1 |
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| CDS TCA 72 bp | CTTGCAGTTAAAGGACAGAGAATTTCAGTGTCTTGTTaGTGTTCAACTGGAGACCATCCTCAGCTCCTAGGG | + |
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Preference number: 6 (lower is better) Translates to: LAVKGQRISVSC*CSTGDHPQLLG Trigger: CCCTAGGAGCTGAGGATGGTCTCCAGTTGAACATCAACAAGACACTGAAATTCTCTGTCCTTTAACTGCAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432488.1 |
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| CDS TCA 72 bp | CAAAACTCCATGTTGATAGAAGTGGAGGGAGAAAGATaGCCAGAGAAGCCTGCCAGTAATCAACACACTTCC | + |
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Preference number: 6 (lower is better) Translates to: QNSMLIEVEGER*PEKPASNQHTS Trigger: GGAAGTGTGTTGATTACTGGCAGGCTTCTCTGGTCATCTTTCTCCCTCCACTTCTATCAACATGGAGTTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432488.1 |
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| CDS CAA 90 bp | CTGCCAGTAATCAACACACTTCCACCTTTCTGTAGAACATTTCATTaGGAAGGAGAGTCACAAATACTTGTTCACTGGGCTGTTCAGACT | + |
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Preference number: 6 (lower is better) Translates to: LPVINTLPPFCRTFH*EGESQILVHWAVQT Trigger: AGTCTGAACAGCCCAGTGAACAAGTATTTGTGACTCTCCTTCCAAATGAAATGTTCTACAGAAAGGTGGAAGTGTGTTGATTACTGGCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432488.1 |
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| CDS CAA 72 bp | GTAGAACATTTCATTTGGAAGGAGAGTCACAAATACTaGTTCACTGGGCTGTTCAGACTGATAACGTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: VEHFIWKESHKY*FTGLFRLITSL Trigger: AAGAGACGTTATCAGTCTGAACAGCCCAGTGAACAAGTATTTGTGACTCTCCTTCCAAATGAAATGTTCTAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432488.1 |
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| CDS CAA 72 bp | ATCAACACACTTCCACCTTTCTGTAGAACATTTCATTaGGAAGGAGAGTCACAAATACTTGTTCACTGGGCT | + |
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Preference number: 6 (lower is better) Translates to: INTLPPFCRTFH*EGESQILVHWA Trigger: AGCCCAGTGAACAAGTATTTGTGACTCTCCTTCCAAATGAAATGTTCTACAGAAAGGTGGAAGTGTGTTGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432488.1 |
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| CDS CAA 90 bp | AGTACAGTCTCATCTGAAACTCAACTGGAGAAAGATTCATTTTCGTaGGCAAAATTTAGTTCCTTGCAGTTAAAGGACAGAGAATTTCAG | + |
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Preference number: 6 (lower is better) Translates to: STVSSETQLEKDSFS*AKFSSLQLKDREFQ Trigger: CTGAAATTCTCTGTCCTTTAACTGCAAGGAACTAAATTTTGCCAACGAAAATGAATCTTTCTCCAGTTGAGTTTCAGATGAGACTGTACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000432488.1 |
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| CDS CCA 72 bp | ATTTGCCTGGAAGTACAGTCTCATCTGAAACTCAACTaGAGAAAGATTCATTTTCGTTGGCAAAATTTAGTT | + |
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Preference number: 6 (lower is better) Translates to: ICLEVQSHLKLN*RKIHFRWQNLV Trigger: AACTAAATTTTGCCAACGAAAATGAATCTTTCTCCAGTTGAGTTTCAGATGAGACTGTACTTCCAGGCAAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000432488.1 |
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| CDS CAA 72 bp | GAGAAAGATTCATTTTCGTTGGCAAAATTTAGTTCCTaGCAGTTAAAGGACAGAGAATTTCAGTGTCTTGTT | + |
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Preference number: 6 (lower is better) Translates to: EKDSFSLAKFSS*QLKDREFQCLV Trigger: AACAAGACACTGAAATTCTCTGTCCTTTAACTGCAAGGAACTAAATTTTGCCAACGAAAATGAATCTTTCTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000432488.1 |
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