Pregenerated sensors for LINC01220 (Homo sapiens)
Ensembl gene IDs: ENSG00000259687Ensembl transcript IDs: ENST00000558575.2, ENST00000561000.1, ENST00000665235.1, ENST00000669323.1
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCATTCATCCATCGCGGCGCCCTCTCTCTGGGCCCCCAGCGCCCCTaGCCTTGCCTCCGCCTGGGTGGGTCCCGGGACAGGAGGCGGGGG | + |
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Preference number: 5 (lower is better) Translates to: SFIHRGALSLGPQRP*PCLRLGGSRDRRRG Trigger: CCCCCGCCTCCTGTCCCGGGACCCACCCAGGCGGAGGCAAGGGCAGGGGCGCTGGGGGCCCAGAGAGAGGGCGCCGCGATGGATGAATGA 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000558575.2 ENST00000561000.1 |
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| CDS GCA 90 bp | CGCGACGAGGCTTCTGGATTGGAGAAGGGCGCGCTGCCTCACATGTaGACTAGGGGGCAGAGCTGCCGCGGGGCTGCTGTAACTCCAAGA | + |
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Preference number: 5 (lower is better) Translates to: RDEASGLEKGALPHM*TRGQSCRGAAVTPR Trigger: TCTTGGAGTTACAGCAGCCCCGCGGCAGCTCTGCCCCCTAGTGCACATGTGAGGCAGCGCGCCCTTCTCCAATCCAGAAGCCTCGTCGCG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS GCA 90 bp | TTGGAGAAGGGCGCGCTGCCTCACATGTGCACTAGGGGGCAGAGCTaGCGCGGGGCTGCTGTAACTCCAAGAACAACCAGAGGGCAAGGG | + |
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Preference number: 5 (lower is better) Translates to: LEKGALPHMCTRGQS*RGAAVTPRTTRGQG Trigger: CCCTTGCCCTCTGGTTGTTCTTGGAGTTACAGCAGCCCCGCGGCAGCTCTGCCCCCTAGTGCACATGTGAGGCAGCGCGCCCTTCTCCAA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS GCA 90 bp | GAGGGCAAGGGGAAGGATCCCAGCCCCTTCCTCAAATCAGGCGGCTaGAGGACGGGAGGGCAGTTGGAAAGCAGTCGTCTTCTTAGTCCG | + |
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Preference number: 5 (lower is better) Translates to: EGKGKDPSPFLKSGG*RTGGQLESSRLLSP Trigger: CGGACTAAGAAGACGACTGCTTTCCAACTGCCCTCCCGTCCTGCAGCCGCCTGATTTGAGGAAGGGGCTGGGATCCTTCCCCTTGCCCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS CCA 90 bp | CAGAAAAACTCCCTTGCTGGCAGCACCGCGACGAGGCTTCTGGATTaGAGAAGGGCGCGCTGCCTCACATGTGCACTAGGGGGCAGAGCT | + |
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Preference number: 5 (lower is better) Translates to: QKNSLAGSTATRLLD*RRARCLTCALGGRA Trigger: AGCTCTGCCCCCTAGTGCACATGTGAGGCAGCGCGCCCTTCTCCAATCCAGAAGCCTCGTCGCGGTGCTGCCAGCAAGGGAGTTTTTCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS CCA 90 bp | CCAGCCCCTTCCTCAAATCAGGCGGCTGCAGGACGGGAGGGCAGTTaGAAAGCAGTCGTCTTCTTAGTCCGAGTTGCCTTCATATTCAGC | + |
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Preference number: 5 (lower is better) Translates to: PAPSSNQAAAGREGS*KAVVFLVRVAFIFS Trigger: GCTGAATATGAAGGCAACTCGGACTAAGAAGACGACTGCTTTCCAACTGCCCTCCCGTCCTGCAGCCGCCTGATTTGAGGAAGGGGCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS TCA 90 bp | GATCCCAGATCACCCACCCACAACAAACGAGACCGCCCCAAATCTTaGCTGCAGCTACAACCAGCAGACGCACAGGAATGCTGGAAACAG | + |
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Preference number: 5 (lower is better) Translates to: DPRSPTHNKRDRPKS*LQLQPADAQECWKQ Trigger: CTGTTTCCAGCATTCCTGTGCGTCTGCTGGTTGTAGCTGCAGTCAAGATTTGGGGCGGTCTCGTTTGTTGTGGGTGGGTGATCTGGGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669323.1 |
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| CDS TCA 90 bp | TGGGCGAGAGATGGCATGATTTCCGGGCACAGAGTGAGAAAATCGTaGTCCCAGATCACCCACCCACAACAAACGAGACCGCCCCAAATC | + |
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Preference number: 5 (lower is better) Translates to: WARDGMISGHRVRKS*SQITHPQQTRPPQI Trigger: GATTTGGGGCGGTCTCGTTTGTTGTGGGTGGGTGATCTGGGATCACGATTTTCTCACTCTGTGCCCGGAAATCATGCCATCTCTCGCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669323.1 |
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| CDS GCA 90 bp | CCAGATCACCCACCCACAACAAACGAGACCGCCCCAAATCTTGACTaGAGCTACAACCAGCAGACGCACAGGAATGCTGGAAACAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: PDHPPTTNETAPNLD*SYNQQTHRNAGNSS Trigger: TGAGCTGTTTCCAGCATTCCTGTGCGTCTGCTGGTTGTAGCTGCAGTCAAGATTTGGGGCGGTCTCGTTTGTTGTGGGTGGGTGATCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669323.1 |
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| CDS TCA 90 bp | TTGTCCTTTGACCTGTCTACAGCACCGCCACCTTCCTCATCTTTCTaGGAGTCCACTTCAAATTTCAGACTTCCTCATCCCACTCTGGGT | + |
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Preference number: 5 (lower is better) Translates to: LSFDLSTAPPPSSSF*ESTSNFRLPHPTLG Trigger: ACCCAGAGTGGGATGAGGAAGTCTGAAATTTGAAGTGGACTCTCAGAAAGATGAGGAAGGTGGCGGTGCTGTAGACAGGTCAAAGGACAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000665235.1 |
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| CDS GCA 72 bp | ACCGCGACGAGGCTTCTGGATTGGAGAAGGGCGCGCTaGCTCACATGTGCACTAGGGGGCAGAGCTGCCGCG | + |
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Preference number: 6 (lower is better) Translates to: TATRLLDWRRAR*LTCALGGRAAA Trigger: CGCGGCAGCTCTGCCCCCTAGTGCACATGTGAGGCAGCGCGCCCTTCTCCAATCCAGAAGCCTCGTCGCGGT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS GCA 72 bp | GCTTCTGGATTGGAGAAGGGCGCGCTGCCTCACATGTaGACTAGGGGGCAGAGCTGCCGCGGGGCTGCTGTA | + |
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Preference number: 6 (lower is better) Translates to: ASGLEKGALPHM*TRGQSCRGAAV Trigger: TACAGCAGCCCCGCGGCAGCTCTGCCCCCTAGTGCACATGTGAGGCAGCGCGCCCTTCTCCAATCCAGAAGC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS GCA 72 bp | GGCGCGCTGCCTCACATGTGCACTAGGGGGCAGAGCTaGCGCGGGGCTGCTGTAACTCCAAGAACAACCAGA | + |
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Preference number: 6 (lower is better) Translates to: GALPHMCTRGQS*RGAAVTPRTTR Trigger: TCTGGTTGTTCTTGGAGTTACAGCAGCCCCGCGGCAGCTCTGCCCCCTAGTGCACATGTGAGGCAGCGCGCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS CCA 72 bp | TCCCTTGCTGGCAGCACCGCGACGAGGCTTCTGGATTaGAGAAGGGCGCGCTGCCTCACATGTGCACTAGGG | + |
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Preference number: 6 (lower is better) Translates to: SLAGSTATRLLD*RRARCLTCALG Trigger: CCCTAGTGCACATGTGAGGCAGCGCGCCCTTCTCCAATCCAGAAGCCTCGTCGCGGTGCTGCCAGCAAGGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS CAA 72 bp | CTCCCTTGCTGGCAGCACCGCGACGAGGCTTCTGGATaGGAGAAGGGCGCGCTGCCTCACATGTGCACTAGG | + |
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Preference number: 6 (lower is better) Translates to: LPCWQHRDEASG*EKGALPHMCTR Trigger: CCTAGTGCACATGTGAGGCAGCGCGCCCTTCTCCAATCCAGAAGCCTCGTCGCGGTGCTGCCAGCAAGGGAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS CAA 90 bp | ACAGAAAAACTCCCTTGCTGGCAGCACCGCGACGAGGCTTCTGGATaGGAGAAGGGCGCGCTGCCTCACATGTGCACTAGGGGGCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: TEKLPCWQHRDEASG*EKGALPHMCTRGQS Trigger: GCTCTGCCCCCTAGTGCACATGTGAGGCAGCGCGCCCTTCTCCAATCCAGAAGCCTCGTCGCGGTGCTGCCAGCAAGGGAGTTTTTCTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS GCA 72 bp | GGGAAGGATCCCAGCCCCTTCCTCAAATCAGGCGGCTaGAGGACGGGAGGGCAGTTGGAAAGCAGTCGTCTT | + |
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Preference number: 6 (lower is better) Translates to: GKDPSPFLKSGG*RTGGQLESSRL Trigger: AAGACGACTGCTTTCCAACTGCCCTCCCGTCCTGCAGCCGCCTGATTTGAGGAAGGGGCTGGGATCCTTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS CCA 72 bp | AAAACTCCCTTGCTGGCAGCACCGCGACGAGGCTTCTaGATTGGAGAAGGGCGCGCTGCCTCACATGTGCAC | + |
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Preference number: 6 (lower is better) Translates to: KTPLLAAPRRGF*IGEGRAASHVH Trigger: GTGCACATGTGAGGCAGCGCGCCCTTCTCCAATCCAGAAGCCTCGTCGCGGTGCTGCCAGCAAGGGAGTTTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS CAA 90 bp | CCCAGCCCCTTCCTCAAATCAGGCGGCTGCAGGACGGGAGGGCAGTaGGAAAGCAGTCGTCTTCTTAGTCCGAGTTGCCTTCATATTCAG | + |
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Preference number: 6 (lower is better) Translates to: PSPFLKSGGCRTGGQ*ESSRLLSPSCLHIQ Trigger: CTGAATATGAAGGCAACTCGGACTAAGAAGACGACTGCTTTCCAACTGCCCTCCCGTCCTGCAGCCGCCTGATTTGAGGAAGGGGCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS CCA 72 bp | TCCTCAAATCAGGCGGCTGCAGGACGGGAGGGCAGTTaGAAAGCAGTCGTCTTCTTAGTCCGAGTTGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: SSNQAAAGREGS*KAVVFLVRVAF Trigger: GAAGGCAACTCGGACTAAGAAGACGACTGCTTTCCAACTGCCCTCCCGTCCTGCAGCCGCCTGATTTGAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS TCA 72 bp | TCACCCACCCACAACAAACGAGACCGCCCCAAATCTTaGCTGCAGCTACAACCAGCAGACGCACAGGAATGC | + |
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Preference number: 6 (lower is better) Translates to: SPTHNKRDRPKS*LQLQPADAQEC Trigger: GCATTCCTGTGCGTCTGCTGGTTGTAGCTGCAGTCAAGATTTGGGGCGGTCTCGTTTGTTGTGGGTGGGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669323.1 |
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| CDS GCA 72 bp | CCACCCACAACAAACGAGACCGCCCCAAATCTTGACTaGAGCTACAACCAGCAGACGCACAGGAATGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: PPTTNETAPNLD*SYNQQTHRNAG Trigger: TCCAGCATTCCTGTGCGTCTGCTGGTTGTAGCTGCAGTCAAGATTTGGGGCGGTCTCGTTTGTTGTGGGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669323.1 |
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| CDS CAA 72 bp | TTCCTCAAATCAGGCGGCTGCAGGACGGGAGGGCAGTaGGAAAGCAGTCGTCTTCTTAGTCCGAGTTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: FLKSGGCRTGGQ*ESSRLLSPSCL Trigger: AAGGCAACTCGGACTAAGAAGACGACTGCTTTCCAACTGCCCTCCCGTCCTGCAGCCGCCTGATTTGAGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000558575.2 ENST00000665235.1 ENST00000669323.1 |
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| CDS CAA 72 bp | CTATCCCAGAAGCAGAGACCCACCTCTCCTAAGTCATaGTCCTTTGACCTGTCTACAGCACCGCCACCTTCC | + |
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Preference number: 6 (lower is better) Translates to: LSQKQRPTSPKS*SFDLSTAPPPS Trigger: GGAAGGTGGCGGTGCTGTAGACAGGTCAAAGGACAATGACTTAGGAGAGGTGGGTCTCTGCTTCTGGGATAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000665235.1 |
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| CDS CAA 72 bp | ATCACCCACCCACAACAAACGAGACCGCCCCAAATCTaGACTGCAGCTACAACCAGCAGACGCACAGGAATG | + |
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Preference number: 6 (lower is better) Translates to: ITHPQQTRPPQI*TAATTSRRTGM Trigger: CATTCCTGTGCGTCTGCTGGTTGTAGCTGCAGTCAAGATTTGGGGCGGTCTCGTTTGTTGTGGGTGGGTGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669323.1 |
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| CDS TCA 72 bp | GATGGCATGATTTCCGGGCACAGAGTGAGAAAATCGTaGTCCCAGATCACCCACCCACAACAAACGAGACCG | + |
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Preference number: 6 (lower is better) Translates to: DGMISGHRVRKS*SQITHPQQTRP Trigger: CGGTCTCGTTTGTTGTGGGTGGGTGATCTGGGATCACGATTTTCTCACTCTGTGCCCGGAAATCATGCCATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669323.1 |
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| CDS CAA 90 bp | CTGCGTCTTCTATCCCAGAAGCAGAGACCCACCTCTCCTAAGTCATaGTCCTTTGACCTGTCTACAGCACCGCCACCTTCCTCATCTTTC | + |
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Preference number: 6 (lower is better) Translates to: LRLLSQKQRPTSPKS*SFDLSTAPPPSSSF Trigger: GAAAGATGAGGAAGGTGGCGGTGCTGTAGACAGGTCAAAGGACAATGACTTAGGAGAGGTGGGTCTCTGCTTCTGGGATAGAAGACGCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000665235.1 |
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| CDS CAA 72 bp | AGAAGCAGAGACCCACCTCTCCTAAGTCATTGTCCTTaGACCTGTCTACAGCACCGCCACCTTCCTCATCTT | + |
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Preference number: 6 (lower is better) Translates to: RSRDPPLLSHCP*TCLQHRHLPHL Trigger: AAGATGAGGAAGGTGGCGGTGCTGTAGACAGGTCAAAGGACAATGACTTAGGAGAGGTGGGTCTCTGCTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000665235.1 |
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| CDS CAA 90 bp | TTCTATCCCAGAAGCAGAGACCCACCTCTCCTAAGTCATTGTCCTTaGACCTGTCTACAGCACCGCCACCTTCCTCATCTTTCTGAGAGT | + |
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Preference number: 6 (lower is better) Translates to: FYPRSRDPPLLSHCP*TCLQHRHLPHLSES Trigger: ACTCTCAGAAAGATGAGGAAGGTGGCGGTGCTGTAGACAGGTCAAAGGACAATGACTTAGGAGAGGTGGGTCTCTGCTTCTGGGATAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000665235.1 |
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| CDS CAA 72 bp | TTGCTTTGTGAAATGACTTACTGTGCAAGGCCATATTaGATTAGATCACTATCCAGAGTCCCTAAAGAACTA | + |
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Preference number: 6 (lower is better) Translates to: LLCEMTYCARPY*IRSLSRVPKEL Trigger: TAGTTCTTTAGGGACTCTGGATAGTGATCTAATCAAATATGGCCTTGCACAGTAAGTCATTTCACAAAGCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000665235.1 |
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