Pregenerated sensors for LINC01219 (Homo sapiens)
Ensembl gene IDs: ENSG00000232987Ensembl transcript IDs: ENST00000418612.2, ENST00000673113.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCCTTTCCGGGCTGTGGAGGGCGTGGGTCCTGTCCGGCCCGGAGATaGTCCGCGGGGTGTGTGTGTGATCGTGGCCCTGTAGCGGGGTGG | + |
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Preference number: 5 (lower is better) Translates to: AFPGCGGRGSCPARR*SAGCVCDRGPVAGW Trigger: CCACCCCGCTACAGGGCCACGATCACACACACACCCCGCGGAGCATCTCCGGGCCGGACAGGACCCACGCCCTCCACAGCCCGGAAAGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS TCA 90 bp | GCGTGGGTCCTGTCCGGCCCGGAGATGCTCCGCGGGGTGTGTGTGTaGTCGTGGCCCTGTAGCGGGGTGGTGTTCCCTGGAGGGTGGACC | + |
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Preference number: 5 (lower is better) Translates to: AWVLSGPEMLRGVCV*SWPCSGVVFPGGWT Trigger: GGTCCACCCTCCAGGGAACACCACCCCGCTACAGGGCCACGATCACACACACACCCCGCGGAGCATCTCCGGGCCGGACAGGACCCACGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS CCA 90 bp | GGTGGGTCTCTGCATGCTGACCAGTTAACCCGCCTTTCCGGGCTGTaGAGGGCGTGGGTCCTGTCCGGCCCGGAGATGCTCCGCGGGGTG | + |
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Preference number: 5 (lower is better) Translates to: GGSLHADQLTRLSGL*RAWVLSGPEMLRGV Trigger: CACCCCGCGGAGCATCTCCGGGCCGGACAGGACCCACGCCCTCCACAGCCCGGAAAGGCGGGTTAACTGGTCAGCATGCAGAGACCCACC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS TCA 90 bp | TCTGTGCCTGGGAGCGGGGTCTCCACTTGGTGGGTCTCTGCATGCTaGCCAGTTAACCCGCCTTTCCGGGCTGTGGAGGGCGTGGGTCCT | + |
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Preference number: 5 (lower is better) Translates to: SVPGSGVSTWWVSAC*PVNPPFRAVEGVGP Trigger: AGGACCCACGCCCTCCACAGCCCGGAAAGGCGGGTTAACTGGTCAGCATGCAGAGACCCACCAAGTGGAGACCCCGCTCCCAGGCACAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS GCA 90 bp | GGCTTGCTGGGAAGGGGCTGCTCTCGCAGAGGCTCCCGCCCGCCCTaGAGCCGTTTCCTGGAAGCAGTCGCTGTGGGTATTCTGTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: GLLGRGCSRRGSRPP*SRFLEAVAVGILFL Trigger: AAGGAACAGAATACCCACAGCGACTGCTTCCAGGAAACGGCTGCAGGGCGGGCGGGAGCCTCTGCGAGAGCAGCCCCTTCCCAGCAAGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS GCA 90 bp | AGACAGAAAATCCCAACTCTGCAGGCCGGCTTGCTGGGAAGGGGCTaGTCTCGCAGAGGCTCCCGCCCGCCCTGCAGCCGTTTCCTGGAA | + |
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Preference number: 5 (lower is better) Translates to: RQKIPTLQAGLLGRG*SRRGSRPPCSRFLE Trigger: TTCCAGGAAACGGCTGCAGGGCGGGCGGGAGCCTCTGCGAGAGCAGCCCCTTCCCAGCAAGCCGGCCTGCAGAGTTGGGATTTTCTGTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS CCA 90 bp | GGGGCTGCTCTCGCAGAGGCTCCCGCCCGCCCTGCAGCCGTTTCCTaGAAGCAGTCGCTGTGGGTATTCTGTTCCTTGTCAGCACTGTGC | + |
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Preference number: 5 (lower is better) Translates to: GAALAEAPARPAAVS*KQSLWVFCSLSALC Trigger: GCACAGTGCTGACAAGGAACAGAATACCCACAGCGACTGCTTCCAGGAAACGGCTGCAGGGCGGGCGGGAGCCTCTGCGAGAGCAGCCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS CCA 90 bp | GAGGCTCCCGCCCGCCCTGCAGCCGTTTCCTGGAAGCAGTCGCTGTaGGTATTCTGTTCCTTGTCAGCACTGTGCTTGCAAAGAAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: EAPARPAAVSWKQSL*VFCSLSALCLQRKQ Trigger: CTGCTTTCTTTGCAAGCACAGTGCTGACAAGGAACAGAATACCCACAGCGACTGCTTCCAGGAAACGGCTGCAGGGCGGGCGGGAGCCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS CCA 90 bp | TTCCGTGACCCAGGAGCACGTTTTCAGGCAGGGATTAGGGGCAGCTaGGTGTGGGAGGCAGGCACTTGGTATACCACCGAATGGAGACAG | + |
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Preference number: 5 (lower is better) Translates to: FRDPGARFQAGIRGS*VWEAGTWYTTEWRQ Trigger: CTGTCTCCATTCGGTGGTATACCAAGTGCCTGCCTCCCACACCCAGCTGCCCCTAATCCCTGCCTGAAAACGTGCTCCTGGGTCACGGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS GCA 72 bp | ATCCCAACTCTGCAGGCCGGCTTGCTGGGAAGGGGCTaGTCTCGCAGAGGCTCCCGCCCGCCCTGCAGCCGT | + |
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Preference number: 6 (lower is better) Translates to: IPTLQAGLLGRG*SRRGSRPPCSR Trigger: ACGGCTGCAGGGCGGGCGGGAGCCTCTGCGAGAGCAGCCCCTTCCCAGCAAGCCGGCCTGCAGAGTTGGGAT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS CCA 72 bp | GACCAGTTAACCCGCCTTTCCGGGCTGTGGAGGGCGTaGGTCCTGTCCGGCCCGGAGATGCTCCGCGGGGTG | + |
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Preference number: 6 (lower is better) Translates to: DQLTRLSGLWRA*VLSGPEMLRGV Trigger: CACCCCGCGGAGCATCTCCGGGCCGGACAGGACCCACGCCCTCCACAGCCCGGAAAGGCGGGTTAACTGGTC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS GCA 72 bp | GGCTGTGGAGGGCGTGGGTCCTGTCCGGCCCGGAGATaGTCCGCGGGGTGTGTGTGTGATCGTGGCCCTGTA | + |
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Preference number: 6 (lower is better) Translates to: GCGGRGSCPARR*SAGCVCDRGPV Trigger: TACAGGGCCACGATCACACACACACCCCGCGGAGCATCTCCGGGCCGGACAGGACCCACGCCCTCCACAGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS GCA 72 bp | GGAAGGGGCTGCTCTCGCAGAGGCTCCCGCCCGCCCTaGAGCCGTTTCCTGGAAGCAGTCGCTGTGGGTATT | + |
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Preference number: 6 (lower is better) Translates to: GRGCSRRGSRPP*SRFLEAVAVGI Trigger: AATACCCACAGCGACTGCTTCCAGGAAACGGCTGCAGGGCGGGCGGGAGCCTCTGCGAGAGCAGCCCCTTCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS CCA 72 bp | CTGCATGCTGACCAGTTAACCCGCCTTTCCGGGCTGTaGAGGGCGTGGGTCCTGTCCGGCCCGGAGATGCTC | + |
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Preference number: 6 (lower is better) Translates to: LHADQLTRLSGL*RAWVLSGPEML Trigger: GAGCATCTCCGGGCCGGACAGGACCCACGCCCTCCACAGCCCGGAAAGGCGGGTTAACTGGTCAGCATGCAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS TCA 72 bp | GGGAGCGGGGTCTCCACTTGGTGGGTCTCTGCATGCTaGCCAGTTAACCCGCCTTTCCGGGCTGTGGAGGGC | + |
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Preference number: 6 (lower is better) Translates to: GSGVSTWWVSAC*PVNPPFRAVEG Trigger: GCCCTCCACAGCCCGGAAAGGCGGGTTAACTGGTCAGCATGCAGAGACCCACCAAGTGGAGACCCCGCTCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS CCA 72 bp | ACCGAGGACGTGCATCCACAGCTGTGCGTCTGTGCCTaGGAGCGGGGTCTCCACTTGGTGGGTCTCTGCATG | + |
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Preference number: 6 (lower is better) Translates to: TEDVHPQLCVCA*ERGLHLVGLCM Trigger: CATGCAGAGACCCACCAAGTGGAGACCCCGCTCCCAGGCACAGACGCACAGCTGTGGATGCACGTCCTCGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS CCA 72 bp | CTCGCAGAGGCTCCCGCCCGCCCTGCAGCCGTTTCCTaGAAGCAGTCGCTGTGGGTATTCTGTTCCTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: LAEAPARPAAVS*KQSLWVFCSLS Trigger: TGACAAGGAACAGAATACCCACAGCGACTGCTTCCAGGAAACGGCTGCAGGGCGGGCGGGAGCCTCTGCGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS CCA 72 bp | CCAGGAGCACGTTTTCAGGCAGGGATTAGGGGCAGCTaGGTGTGGGAGGCAGGCACTTGGTATACCACCGAA | + |
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Preference number: 6 (lower is better) Translates to: PGARFQAGIRGS*VWEAGTWYTTE Trigger: TTCGGTGGTATACCAAGTGCCTGCCTCCCACACCCAGCTGCCCCTAATCCCTGCCTGAAAACGTGCTCCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS CCA 72 bp | GCCCGCCCTGCAGCCGTTTCCTGGAAGCAGTCGCTGTaGGTATTCTGTTCCTTGTCAGCACTGTGCTTGCAA | + |
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Preference number: 6 (lower is better) Translates to: ARPAAVSWKQSL*VFCSLSALCLQ Trigger: TTGCAAGCACAGTGCTGACAAGGAACAGAATACCCACAGCGACTGCTTCCAGGAAACGGCTGCAGGGCGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS CCA 72 bp | CGTCACCTGTGTCAGCTCCTAGGGATTGTCTCCTCCTaGTCACTTGGAGAGAACAGGCGTGCTGGACACGTC | + |
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Preference number: 6 (lower is better) Translates to: RHLCQLLGIVSS*SLGENRRAGHV Trigger: GACGTGTCCAGCACGCCTGTTCTCTCCAAGTGACCAGGAGGAGACAATCCCTAGGAGCTGACACAGGTGACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS CCA 72 bp | GTGTCAGCTCCTAGGGATTGTCTCCTCCTGGTCACTTaGAGAGAACAGGCGTGCTGGACACGTCCACATCTC | + |
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Preference number: 6 (lower is better) Translates to: VSAPRDCLLLVT*REQACWTRPHL Trigger: GAGATGTGGACGTGTCCAGCACGCCTGTTCTCTCCAAGTGACCAGGAGGAGACAATCCCTAGGAGCTGACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS CCA 72 bp | GAACATGGAAGACTCTGCCCACTTCAAATCCCTGCCTaGGGAAGGACACATGGGAATGGGGCCGGGGGAAAA | + |
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Preference number: 6 (lower is better) Translates to: EHGRLCPLQIPA*GRTHGNGAGGK Trigger: TTTTCCCCCGGCCCCATTCCCATGTGTCCTTCCCCAGGCAGGGATTTGAAGTGGGCAGAGTCTTCCATGTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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| CDS CAA 90 bp | CCTGCAGCCGTTTCCTGGAAGCAGTCGCTGTGGGTATTCTGTTCCTaGTCAGCACTGTGCTTGCAAAGAAAGCAGACACTGTGCTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: PAAVSWKQSLWVFCS*SALCLQRKQTLCSL Trigger: CAAGGAGCACAGTGTCTGCTTTCTTTGCAAGCACAGTGCTGACAAGGAACAGAATACCCACAGCGACTGCTTCCAGGAAACGGCTGCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418612.2 ENST00000673113.1 |
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