Pregenerated sensors for LINC01216 (Homo sapiens)
Ensembl gene IDs: ENSG00000250223Ensembl transcript IDs: ENST00000515728.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCAAGTGGAATGGTGAGAAATCTGGAAAGCACATCAGACTGTAGATaGCATGGTGAAACATTTGAGGATGTAGACTCTGCTGCAGGAAAT | + |
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Preference number: 5 (lower is better) Translates to: SSGMVRNLESTSDCR*HGETFEDVDSAAGN Trigger: ATTTCCTGCAGCAGAGTCTACATCCTCAAATGTTTCACCATGCCATCTACAGTCTGATGTGCTTTCCAGATTTCTCACCATTCCACTTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515728.1 |
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| CDS TCA 90 bp | CACACTCTCAAATCAAAGTCATTTAAAGGAGATCAAGTGGAATGGTaGGAAATCTGGAAAGCACATCAGACTGTAGATGGCATGGTGAAA | + |
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Preference number: 5 (lower is better) Translates to: HTLKSKSFKGDQVEW*EIWKAHQTVDGMVK Trigger: TTTCACCATGCCATCTACAGTCTGATGTGCTTTCCAGATTTCTCACCATTCCACTTGATCTCCTTTAAATGACTTTGATTTGAGAGTGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515728.1 |
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| CDS TCA 90 bp | TCACATGATATTGTGAGCATTGCATCCAGTTCTGAGCACTATATTTaGAGATGCACACTCTCAAATCAAAGTCATTTAAAGGAGATCAAG | + |
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Preference number: 5 (lower is better) Translates to: SHDIVSIASSSEHYI*RCTLSNQSHLKEIK Trigger: CTTGATCTCCTTTAAATGACTTTGATTTGAGAGTGTGCATCTTCAAATATAGTGCTCAGAACTGGATGCAATGCTCACAATATCATGTGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515728.1 |
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| CDS CAA 72 bp | GAGACCGAAAAGCACAAGATCAAGGTACCATTCAGTTaGGTTCCTGGTAATGGCTGTCTTCATGACTTGCAG | + |
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Preference number: 6 (lower is better) Translates to: ETEKHKIKVPFS*VPGNGCLHDLQ Trigger: CTGCAAGTCATGAAGACAGCCATTACCAGGAACCAAACTGAATGGTACCTTGATCTTGTGCTTTTCGGTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515728.1 |
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| CDS CCA 72 bp | ATGGTGAGAAATCTGGAAAGCACATCAGACTGTAGATaGCATGGTGAAACATTTGAGGATGTAGACTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: MVRNLESTSDCR*HGETFEDVDSA Trigger: AGCAGAGTCTACATCCTCAAATGTTTCACCATGCCATCTACAGTCTGATGTGCTTTCCAGATTTCTCACCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515728.1 |
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| CDS CAA 72 bp | TTCAGTTTGGTTCCTGGTAATGGCTGTCTTCATGACTaGCAGACAGCTGTCTTTTTGTTGTGTCCTGTATTT | + |
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Preference number: 6 (lower is better) Translates to: FSLVPGNGCLHD*QTAVFLLCPVF Trigger: AAATACAGGACACAACAAAAAGACAGCTGTCTGCAAGTCATGAAGACAGCCATTACCAGGAACCAAACTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000515728.1 |
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| CDS TCA 72 bp | AACTTGTATCGACTTAGTGCTGGTCACATGATATTGTaGGCATTGCATCCAGTTCTGAGCACTATATTTGAA | + |
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Preference number: 6 (lower is better) Translates to: NLYRLSAGHMIL*ALHPVLSTIFE Trigger: TTCAAATATAGTGCTCAGAACTGGATGCAATGCTCACAATATCATGTGACCAGCACTAAGTCGATACAAGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515728.1 |
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| CDS CCA 72 bp | ACCCTTGCAAGCTCTTCAATTCCTGTGACCATTACTTaGGTGTTCCTCTGTAAAATTATGCTCTTCATAAAT | + |
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Preference number: 6 (lower is better) Translates to: TLASSSIPVTIT*VFLCKIMLFIN Trigger: ATTTATGAAGAGCATAATTTTACAGAGGAACACCCAAGTAATGGTCACAGGAATTGAAGAGCTTGCAAGGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515728.1 |
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| CDS TCA 72 bp | ATTGTGAGCATTGCATCCAGTTCTGAGCACTATATTTaGAGATGCACACTCTCAAATCAAAGTCATTTAAAG | + |
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Preference number: 6 (lower is better) Translates to: IVSIASSSEHYI*RCTLSNQSHLK Trigger: CTTTAAATGACTTTGATTTGAGAGTGTGCATCTTCAAATATAGTGCTCAGAACTGGATGCAATGCTCACAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515728.1 |
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