Pregenerated sensors for LINC01213 (Homo sapiens)
Ensembl gene IDs: ENSG00000244541Ensembl transcript IDs: ENST00000472890.5, ENST00000498005.1, ENST00000662289.1, ENST00000664180.1, ENST00000665197.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCTAGCACCCGATCAGCTGCGGCAGGAGCCCAGGGGCATACCTGGTaGCCTGAAATGAAGGACCTCCAAGTGAATAGATCTTCACATAGT | + |
|
Preference number: 5 (lower is better) Translates to: PSTRSAAAGAQGHTW*PEMKDLQVNRSSHS Trigger: ACTATGTGAAGATCTATTCACTTGGAGGTCCTTCATTTCAGGTCACCAGGTATGCCCCTGGGCTCCTGCCGCAGCTGATCGGGTGCTAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665197.1 |
||
| CDS TCA 90 bp | CGAGCAAGCAGAATTCTGGAAGGCAACATCTTGAGAGCCCTGAAGTaGCAATGGGATTCTGGGAAAGTCAATTCCTGGAGCCCCAGTCTC | + |
|
Preference number: 5 (lower is better) Translates to: RASRILEGNILRALK*QWDSGKVNSWSPSL Trigger: GAGACTGGGGCTCCAGGAATTGACTTTCCCAGAATCCCATTGTCACTTCAGGGCTCTCAAGATGTTGCCTTCCAGAATTCTGCTTGCTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662289.1 |
||
| CDS TCA 90 bp | GGTGAACAGACATCAGAGAATTGGACTAGTAGCTGGGGCAAAATATaGGGCCAGGAATCCCACCCACTGATTAAGAAGACCGCTAGGAAC | + |
|
Preference number: 5 (lower is better) Translates to: GEQTSENWTSSWGKI*GQESHPLIKKTARN Trigger: GTTCCTAGCGGTCTTCTTAATCAGTGGGTGGGATTCCTGGCCTCATATTTTGCCCCAGCTACTAGTCCAATTCTCTGATGTCTGTTCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662289.1 |
||
| CDS CCA 90 bp | TCTGGAAGGCAACATCTTGAGAGCCCTGAAGTGACAATGGGATTCTaGGAAAGTCAATTCCTGGAGCCCCAGTCTCTTCATTTTGGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: SGRQHLESPEVTMGF*ESQFLEPQSLHFGS Trigger: AGAACCAAAATGAAGAGACTGGGGCTCCAGGAATTGACTTTCCCAGAATCCCATTGTCACTTCAGGGCTCTCAAGATGTTGCCTTCCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662289.1 |
||
| CDS CCA 90 bp | AACAGAATATTTCTACTCTTGCAGCCAGAGTCCAGGGCTGTGGTGTaGGTGAACAGACATCAGAGAATTGGACTAGTAGCTGGGGCAAAA | + |
|
Preference number: 5 (lower is better) Translates to: NRIFLLLQPESRAVV*VNRHQRIGLVAGAK Trigger: TTTTGCCCCAGCTACTAGTCCAATTCTCTGATGTCTGTTCACCCACACCACAGCCCTGGACTCTGGCTGCAAGAGTAGAAATATTCTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662289.1 |
||
| CDS TCA 90 bp | GGACTAGTAGCTGGGGCAAAATATGAGGCCAGGAATCCCACCCACTaGTTAAGAAGACCGCTAGGAACCATGAATTACTTAGGAATTACC | + |
|
Preference number: 5 (lower is better) Translates to: GLVAGAKYEARNPTH*LRRPLGTMNYLGIT Trigger: GGTAATTCCTAAGTAATTCATGGTTCCTAGCGGTCTTCTTAATCAGTGGGTGGGATTCCTGGCCTCATATTTTGCCCCAGCTACTAGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662289.1 |
||
| CDS CCA 90 bp | TCCTTTGAAGAGCTTTGCATTTCTTCCAATTGCTTTCTCCCAGACTaGGTAACTCCTTTCTTCCTGCAAATTGCACCTCACTCCATCTCC | + |
|
Preference number: 5 (lower is better) Translates to: SFEELCISSNCFLPD*VTPFFLQIAPHSIS Trigger: GGAGATGGAGTGAGGTGCAATTTGCAGGAAGAAAGGAGTTACCCAGTCTGGGAGAAAGCAATTGGAAGAAATGCAAAGCTCTTCAAAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664180.1 |
||
| CDS TCA 72 bp | CGATCAGCTGCGGCAGGAGCCCAGGGGCATACCTGGTaGCCTGAAATGAAGGACCTCCAAGTGAATAGATCT | + |
|
Preference number: 6 (lower is better) Translates to: RSAAAGAQGHTW*PEMKDLQVNRS Trigger: AGATCTATTCACTTGGAGGTCCTTCATTTCAGGTCACCAGGTATGCCCCTGGGCTCCTGCCGCAGCTGATCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000665197.1 |
||
| CDS TCA 72 bp | CATCATATTAAAGTTACCCATCCAGACACCGGCCCCTaGGGGGAGAGAAGGAACTCACCGTGTATCCTCAGC | + |
|
Preference number: 6 (lower is better) Translates to: HHIKVTHPDTGP*GERRNSPCILS Trigger: GCTGAGGATACACGGTGAGTTCCTTCTCTCCCCTCAGGGGCCGGTGTCTGGATGGGTAACTTTAATATGATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000664180.1 |
||
| CDS TCA 72 bp | GCTGGGGCAAAATATGAGGCCAGGAATCCCACCCACTaGTTAAGAAGACCGCTAGGAACCATGAATTACTTA | + |
|
Preference number: 6 (lower is better) Translates to: AGAKYEARNPTH*LRRPLGTMNYL Trigger: TAAGTAATTCATGGTTCCTAGCGGTCTTCTTAATCAGTGGGTGGGATTCCTGGCCTCATATTTTGCCCCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662289.1 |
||
| CDS CAA 72 bp | CCACCTGGGAGGTCAAGGGCCTTCCTTCATGTTCTTTaGGCCCTCTCTGTATCCGACATCATATTAAAGTTA | + |
|
Preference number: 6 (lower is better) Translates to: PPGRSRAFLHVL*ALSVSDIILKL Trigger: TAACTTTAATATGATGTCGGATACAGAGAGGGCCAAAAGAACATGAAGGAAGGCCCTTGACCTCCCAGGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664180.1 |
||
| CDS CAA 72 bp | GGGAAAGTCAATTCCTGGAGCCCCAGTCTCTTCATTTaGGTTCTCTCATTTGACATTTTGCATGATGACAGT | + |
|
Preference number: 6 (lower is better) Translates to: GKVNSWSPSLFI*VLSFDILHDDS Trigger: ACTGTCATCATGCAAAATGTCAAATGAGAGAACCAAAATGAAGAGACTGGGGCTCCAGGAATTGACTTTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662289.1 |
||
| CDS CAA 90 bp | TGGGATTCTGGGAAAGTCAATTCCTGGAGCCCCAGTCTCTTCATTTaGGTTCTCTCATTTGACATTTTGCATGATGACAGTTGCAGAATT | + |
|
Preference number: 6 (lower is better) Translates to: WDSGKVNSWSPSLFI*VLSFDILHDDSCRI Trigger: AATTCTGCAACTGTCATCATGCAAAATGTCAAATGAGAGAACCAAAATGAAGAGACTGGGGCTCCAGGAATTGACTTTCCCAGAATCCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662289.1 |
||
| CDS CCA 72 bp | GAAGCTTGGCTTGGGAATCCATTGATTGAAATTGTTTaGACTGGCAGTAGAACAAAGTACAAATGGTTAAGC | + |
|
Preference number: 6 (lower is better) Translates to: EAWLGNPLIEIV*TGSRTKYKWLS Trigger: GCTTAACCATTTGTACTTTGTTCTACTGCCAGTCCAAACAATTTCAATCAATGGATTCCCAAGCCAAGCTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662289.1 |
||
| CDS CAA 90 bp | TCCCTTCCTAACAATATAGAATCCAGCATACTTTGGTTCTCTCATTaGACATTTTGCATGATGACAGTTGCAGAATTTGACTTCTGGGCA | + |
|
Preference number: 6 (lower is better) Translates to: SLPNNIESSILWFSH*TFCMMTVAEFDFWA Trigger: TGCCCAGAAGTCAAATTCTGCAACTGTCATCATGCAAAATGTCAAATGAGAGAACCAAAGTATGCTGGATTCTATATTGTTAGGAAGGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000472890.5 ENST00000498005.1 ENST00000664180.1 ENST00000665197.1 |
||
| CDS CAA 72 bp | AACAATATAGAATCCAGCATACTTTGGTTCTCTCATTaGACATTTTGCATGATGACAGTTGCAGAATTTGAC | + |
|
Preference number: 6 (lower is better) Translates to: NNIESSILWFSH*TFCMMTVAEFD Trigger: GTCAAATTCTGCAACTGTCATCATGCAAAATGTCAAATGAGAGAACCAAAGTATGCTGGATTCTATATTGTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000472890.5 ENST00000498005.1 ENST00000664180.1 ENST00000665197.1 |
||