Pregenerated sensors for LINC01209 (Homo sapiens)
Ensembl gene IDs: ENSG00000228308Ensembl transcript IDs: ENST00000451289.1, ENST00000651920.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGCTGCCTCCTTAAAGATGCAAAGCAAGGGCCGGCAGCCCCTCTGTaGTGGCGGGTAGACATCCGGACAGGGCCTTCTCCACGGCCCCTA | + |
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Preference number: 5 (lower is better) Translates to: GCLLKDAKQGPAAPL*WRVDIRTGPSPRPL Trigger: TAGGGGCCGTGGAGAAGGCCCTGTCCGGATGTCTACCCGCCAGCACAGAGGGGCTGCCGGCCCTTGCTTTGCATCTTTAAGGAGGCAGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS CCA 90 bp | TGCCTCCTTAAAGATGCAAAGCAAGGGCCGGCAGCCCCTCTGTGCTaGCGGGTAGACATCCGGACAGGGCCTTCTCCACGGCCCCTAGCG | + |
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Preference number: 5 (lower is better) Translates to: CLLKDAKQGPAAPLC*RVDIRTGPSPRPLA Trigger: CGCTAGGGGCCGTGGAGAAGGCCCTGTCCGGATGTCTACCCGCCAGCACAGAGGGGCTGCCGGCCCTTGCTTTGCATCTTTAAGGAGGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS TCA 90 bp | ACACAGCTGTCAGTGGTAAAACTAAGACTCGGATGCGGGGATATCTaGCTACACCAGGCTGCCTCCTTAAAGATGCAAAGCAAGGGCCGG | + |
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Preference number: 5 (lower is better) Translates to: TQLSVVKLRLGCGDI*LHQAASLKMQSKGR Trigger: CCGGCCCTTGCTTTGCATCTTTAAGGAGGCAGCCTGGTGTAGTCAGATATCCCCGCATCCGAGTCTTAGTTTTACCACTGACAGCTGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS CCA 90 bp | AAGCAAATGAAATTAGAGTGGAAATTTGGAAATTCCCGTGCCACATaGCCTCTGCAGTGCTCCATCTGTCAAGAGTTGGTTTTGAAGACT | + |
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Preference number: 5 (lower is better) Translates to: KQMKLEWKFGNSRAT*PLQCSICQELVLKT Trigger: AGTCTTCAAAACCAACTCTTGACAGATGGAGCACTGCAGAGGCCATGTGGCACGGGAATTTCCAAATTTCCACTCTAATTTCATTTGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS CCA 90 bp | ACTTTAGAAACTGTCATTCATCTAACGGCTTTGCATTATTTCTTCTaGGAAAACCCATTGCCGGGCTCAAGGCATTATCAATTTCATGTC | + |
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Preference number: 5 (lower is better) Translates to: TLETVIHLTALHYFF*ENPLPGSRHYQFHV Trigger: GACATGAAATTGATAATGCCTTGAGCCCGGCAATGGGTTTTCCCAGAAGAAATAATGCAAAGCCGTTAGATGAATGACAGTTTCTAAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS GCA 72 bp | CTTAAAGATGCAAAGCAAGGGCCGGCAGCCCCTCTGTaGTGGCGGGTAGACATCCGGACAGGGCCTTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: LKDAKQGPAAPL*WRVDIRTGPSP Trigger: TGGAGAAGGCCCTGTCCGGATGTCTACCCGCCAGCACAGAGGGGCTGCCGGCCCTTGCTTTGCATCTTTAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS GCA 72 bp | AAGACTCGGATGCGGGGATATCTGACTACACCAGGCTaGCTCCTTAAAGATGCAAAGCAAGGGCCGGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: KTRMRGYLTTPG*LLKDAKQGPAA Trigger: GGCTGCCGGCCCTTGCTTTGCATCTTTAAGGAGGCAGCCTGGTGTAGTCAGATATCCCCGCATCCGAGTCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS CAA 72 bp | AGCGAAGCCTGTGTTCTCCAGCGCCATCTACAGCCCTaGTTCATAAAGAGCCCGTTACACGGCCTCCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: SEACVLQRHLQP*FIKSPLHGLLF Trigger: AAACAGGAGGCCGTGTAACGGGCTCTTTATGAACAAGGGCTGTAGATGGCGCTGGAGAACACAGGCTTCGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS TCA 72 bp | TCAGTGGTAAAACTAAGACTCGGATGCGGGGATATCTaGCTACACCAGGCTGCCTCCTTAAAGATGCAAAGC | + |
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Preference number: 6 (lower is better) Translates to: SVVKLRLGCGDI*LHQAASLKMQS Trigger: GCTTTGCATCTTTAAGGAGGCAGCCTGGTGTAGTCAGATATCCCCGCATCCGAGTCTTAGTTTTACCACTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS CAA 90 bp | AATTCCCGTGCCACATGGCCTCTGCAGTGCTCCATCTGTCAAGAGTaGGTTTTGAAGACTTTAGAAACTGTCATTCATCTAACGGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: NSRATWPLQCSICQE*VLKTLETVIHLTAL Trigger: CAAAGCCGTTAGATGAATGACAGTTTCTAAAGTCTTCAAAACCAACTCTTGACAGATGGAGCACTGCAGAGGCCATGTGGCACGGGAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS GCA 72 bp | GCAAATGAAATTAGAGTGGAAATTTGGAAATTCCCGTaGCACATGGCCTCTGCAGTGCTCCATCTGTCAAGA | + |
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Preference number: 6 (lower is better) Translates to: ANEIRVEIWKFP*HMASAVLHLSR Trigger: TCTTGACAGATGGAGCACTGCAGAGGCCATGTGGCACGGGAATTTCCAAATTTCCACTCTAATTTCATTTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS CCA 72 bp | AAATTAGAGTGGAAATTTGGAAATTCCCGTGCCACATaGCCTCTGCAGTGCTCCATCTGTCAAGAGTTGGTT | + |
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Preference number: 6 (lower is better) Translates to: KLEWKFGNSRAT*PLQCSICQELV Trigger: AACCAACTCTTGACAGATGGAGCACTGCAGAGGCCATGTGGCACGGGAATTTCCAAATTTCCACTCTAATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS CAA 90 bp | GTCATTCATCTAACGGCTTTGCATTATTTCTTCTGGGAAAACCCATaGCCGGGCTCAAGGCATTATCAATTTCATGTCCTCCTTGCCCTA | + |
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Preference number: 6 (lower is better) Translates to: VIHLTALHYFFWENP*PGSRHYQFHVLLAL Trigger: TAGGGCAAGGAGGACATGAAATTGATAATGCCTTGAGCCCGGCAATGGGTTTTCCCAGAAGAAATAATGCAAAGCCGTTAGATGAATGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS CAA 90 bp | CGTGCCACATGGCCTCTGCAGTGCTCCATCTGTCAAGAGTTGGTTTaGAAGACTTTAGAAACTGTCATTCATCTAACGGCTTTGCATTAT | + |
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Preference number: 6 (lower is better) Translates to: RATWPLQCSICQELV*KTLETVIHLTALHY Trigger: ATAATGCAAAGCCGTTAGATGAATGACAGTTTCTAAAGTCTTCAAAACCAACTCTTGACAGATGGAGCACTGCAGAGGCCATGTGGCACG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS CAA 72 bp | TGGCCTCTGCAGTGCTCCATCTGTCAAGAGTTGGTTTaGAAGACTTTAGAAACTGTCATTCATCTAACGGCT | + |
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Preference number: 6 (lower is better) Translates to: WPLQCSICQELV*KTLETVIHLTA Trigger: AGCCGTTAGATGAATGACAGTTTCTAAAGTCTTCAAAACCAACTCTTGACAGATGGAGCACTGCAGAGGCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS CCA 72 bp | ACTGTCATTCATCTAACGGCTTTGCATTATTTCTTCTaGGAAAACCCATTGCCGGGCTCAAGGCATTATCAA | + |
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Preference number: 6 (lower is better) Translates to: TVIHLTALHYFF*ENPLPGSRHYQ Trigger: TTGATAATGCCTTGAGCCCGGCAATGGGTTTTCCCAGAAGAAATAATGCAAAGCCGTTAGATGAATGACAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS CAA 90 bp | GAGTTGGTTTTGAAGACTTTAGAAACTGTCATTCATCTAACGGCTTaGCATTATTTCTTCTGGGAAAACCCATTGCCGGGCTCAAGGCAT | + |
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Preference number: 6 (lower is better) Translates to: ELVLKTLETVIHLTA*HYFFWENPLPGSRH Trigger: ATGCCTTGAGCCCGGCAATGGGTTTTCCCAGAAGAAATAATGCAAAGCCGTTAGATGAATGACAGTTTCTAAAGTCTTCAAAACCAACTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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| CDS CAA 72 bp | GGAGAAGGTGTTACTTCAAAGCATCTATCTCAACTTTaGCAGGGGGCTAATGATGGTCTGGATCTATGTTTT | + |
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Preference number: 6 (lower is better) Translates to: GEGVTSKHLSQL*QGANDGLDLCF Trigger: AAAACATAGATCCAGACCATCATTAGCCCCCTGCAAAAGTTGAGATAGATGCTTTGAAGTAACACCTTCTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000451289.1 ENST00000651920.1 |
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| CDS TCA 72 bp | TTCCATATAATGAGGACAATTAGACCTATCCGCAAGTaGTGTTTTAATTCGTTCCTTCTTCTAACAAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: FHIMRTIRPIRK*CFNSFLLLTRE Trigger: TTCTCTTGTTAGAAGAAGGAACGAATTAAAACATCACTTGCGGATAGGTCTAATTGTCCTCATTATATGGAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451289.1 |
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