Pregenerated sensors for LINC01189 (Homo sapiens)
Ensembl gene IDs: ENSG00000232827Ensembl transcript IDs: ENST00000428440.1, ENST00000654178.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGAGCCATGGTGTTACAGGCTCCAGCCTCCAGCTCCCCCTTCTCCTaGTCCTCTAAGCCGGGAACAGAGCAGCTCGGCAGGAGATACTGG | + |
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Preference number: 5 (lower is better) Translates to: RAMVLQAPASSSPFS*SSKPGTEQLGRRYW Trigger: CCAGTATCTCCTGCCGAGCTGCTCTGTTCCCGGCTTAGAGGACCAGGAGAAGGGGGAGCTGGAGGCTGGAGCCTGTAACACCATGGCTCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654178.1 |
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| CDS CCA 90 bp | GTCACCACAGGGGACTCCTCCTTCATCAGCCTGGCTTGGAGTAGCTaGGCAGACAATGCCAGAAAAACCGCTCAGGCCGCCCTCCTAAGA | + |
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Preference number: 5 (lower is better) Translates to: VTTGDSSFISLAWSS*ADNARKTAQAALLR Trigger: TCTTAGGAGGGCGGCCTGAGCGGTTTTTCTGGCATTGTCTGCCCAGCTACTCCAAGCCAGGCTGATGAAGGAGGAGTCCCCTGTGGTGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654178.1 |
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| CDS CCA 90 bp | AAGATGTATCATGTAGGTTCTTTAATTGTAACAAATGCACCACTCTaGTGGGGGATGTTTATTATGGGGGAGGCTATGCATGTGTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: KMYHVGSLIVTNAPL*WGMFIMGEAMHVWG Trigger: CCCCCACACATGCATAGCCTCCCCCATAATAAACATCCCCCACCAGAGTGGTGCATTTGTTACAATTAAAGAACCTACATGATACATCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000428440.1 |
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| CDS TCA 90 bp | GTGAATGAACTGCAGCTACTCACATTCTCAAACACAGCACTGCAATaGGATACTACTGCATGCATATTAGAATGGCAAAAATCCAGAACT | + |
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Preference number: 5 (lower is better) Translates to: VNELQLLTFSNTALQ*DTTACILEWQKSRT Trigger: AGTTCTGGATTTTTGCCATTCTAATATGCATGCAGTAGTATCTCATTGCAGTGCTGTGTTTGAGAATGTGAGTAGCTGCAGTTCATTCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000428440.1 |
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| CDS TCA 90 bp | ATCATATATTCCAATAATAGAGTACCTCGCAGCACTAAGAGTGAATaGACTGCAGCTACTCACATTCTCAAACACAGCACTGCAATGAGA | + |
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Preference number: 5 (lower is better) Translates to: IIYSNNRVPRSTKSE*TAATHILKHSTAMR Trigger: TCTCATTGCAGTGCTGTGTTTGAGAATGTGAGTAGCTGCAGTTCATTCACTCTTAGTGCTGCGAGGTACTCTATTATTGGAATATATGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428440.1 |
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| CDS CAA 90 bp | CGCTCAGGCCGCCCTCCTAAGACTTCAGCCGCGCTGCCATCTCTGTaGCCACCACCATCCAGAGCGAGACGAGCCATGGTGTTACAGGCT | + |
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Preference number: 6 (lower is better) Translates to: RSGRPPKTSAALPSL*PPPSRARRAMVLQA Trigger: AGCCTGTAACACCATGGCTCGTCTCGCTCTGGATGGTGGTGGCAACAGAGATGGCAGCGCGGCTGAAGTCTTAGGAGGGCGGCCTGAGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654178.1 |
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| CDS CCA 72 bp | GGGGACTCCTCCTTCATCAGCCTGGCTTGGAGTAGCTaGGCAGACAATGCCAGAAAAACCGCTCAGGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: GDSSFISLAWSS*ADNARKTAQAA Trigger: GGCGGCCTGAGCGGTTTTTCTGGCATTGTCTGCCCAGCTACTCCAAGCCAGGCTGATGAAGGAGGAGTCCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654178.1 |
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| CDS CCA 72 bp | CAGGGCGCTCCTGTTGAGCTGCCGTCTCCATCACCGTaGCCGCCACAACAGCAGGAGATGAATCACAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: QGAPVELPSPSP*PPQQQEMNHRA Trigger: AGCTCTGTGATTCATCTCCTGCTGTTGTGGCGGCCACGGTGATGGAGACGGCAGCTCAACAGGAGCGCCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654178.1 |
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| CDS TCA 72 bp | CGTCTCCATCACCGTGGCCGCCACAACAGCAGGAGATaGATCACAGAGCTGTGCCATCTTCAGGCTCCAACC | + |
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Preference number: 6 (lower is better) Translates to: RLHHRGRHNSRR*ITELCHLQAPT Trigger: GGTTGGAGCCTGAAGATGGCACAGCTCTGTGATTCATCTCCTGCTGTTGTGGCGGCCACGGTGATGGAGACG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654178.1 |
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| CDS CCA 72 bp | GTCACCACAGGGGACTCCTCCTTCATCAGCCTGGCTTaGAGTAGCTGGGCAGACAATGCCAGAAAAACCGCT | + |
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Preference number: 6 (lower is better) Translates to: VTTGDSSFISLA*SSWADNARKTA Trigger: AGCGGTTTTTCTGGCATTGTCTGCCCAGCTACTCCAAGCCAGGCTGATGAAGGAGGAGTCCCCTGTGGTGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654178.1 |
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| CDS CCA 72 bp | TTAGGGATAGTGGTTACCTCTTGTGGAAGGAGTGAGTaGCATTGTAGAAGGGCAATGGGAGTTTCTAAGATA | + |
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Preference number: 6 (lower is better) Translates to: LGIVVTSCGRSE*HCRRAMGVSKI Trigger: TATCTTAGAAACTCCCATTGCCCTTCTACAATGCCACTCACTCCTTCCACAAGAGGTAACCACTATCCCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428440.1 |
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| CDS CCA 72 bp | GTAGGTTCTTTAATTGTAACAAATGCACCACTCTGGTaGGGGATGTTTATTATGGGGGAGGCTATGCATGTG | + |
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Preference number: 6 (lower is better) Translates to: VGSLIVTNAPLW*GMFIMGEAMHV Trigger: CACATGCATAGCCTCCCCCATAATAAACATCCCCCACCAGAGTGGTGCATTTGTTACAATTAAAGAACCTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000428440.1 |
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| CDS TCA 72 bp | TCCAATAATAGAGTACCTCGCAGCACTAAGAGTGAATaGACTGCAGCTACTCACATTCTCAAACACAGCACT | + |
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Preference number: 6 (lower is better) Translates to: SNNRVPRSTKSE*TAATHILKHST Trigger: AGTGCTGTGTTTGAGAATGTGAGTAGCTGCAGTTCATTCACTCTTAGTGCTGCGAGGTACTCTATTATTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428440.1 |
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| CDS CCA 72 bp | CATGTAGGTTCTTTAATTGTAACAAATGCACCACTCTaGTGGGGGATGTTTATTATGGGGGAGGCTATGCAT | + |
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Preference number: 6 (lower is better) Translates to: HVGSLIVTNAPL*WGMFIMGEAMH Trigger: ATGCATAGCCTCCCCCATAATAAACATCCCCCACCAGAGTGGTGCATTTGTTACAATTAAAGAACCTACATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000428440.1 |
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| CDS CAA 72 bp | CCCGCAATCTTGTTTCTTGGTATATACCCAAAGGAGTaGAAAACTTATGTCCACACAGAAACCTGCACACAG | + |
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Preference number: 6 (lower is better) Translates to: PAILFLGIYPKE*KTYVHTETCTQ Trigger: CTGTGTGCAGGTTTCTGTGTGGACATAAGTTTTCAACTCCTTTGGGTATATACCAAGAAACAAGATTGCGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428440.1 |
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| CDS TCA 72 bp | CCGCAATCTTGTTTCTTGGTATATACCCAAAGGAGTTaGAAACTTATGTCCACACAGAAACCTGCACACAGA | + |
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Preference number: 6 (lower is better) Translates to: PQSCFLVYTQRS*KLMSTQKPAHR Trigger: TCTGTGTGCAGGTTTCTGTGTGGACATAAGTTTTCAACTCCTTTGGGTATATACCAAGAAACAAGATTGCGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428440.1 |
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| CDS CAA 90 bp | TGGCTGTCAAGCCATGAAAAGACACAGTGGAAGCTTACATGCATATaGCAGAATGAAAGAAGCCAATCTAAAAAGGCTACGTATGTCACT | + |
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Preference number: 6 (lower is better) Translates to: WLSSHEKTQWKLTCI*QNERSQSKKATYVT Trigger: AGTGACATACGTAGCCTTTTTAGATTGGCTTCTTTCATTCTGCAATATGCATGTAAGCTTCCACTGTGTCTTTTCATGGCTTGACAGCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000428440.1 |
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| CDS TCA 72 bp | CTGCAGCTACTCACATTCTCAAACACAGCACTGCAATaGGATACTACTGCATGCATATTAGAATGGCAAAAA | + |
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Preference number: 6 (lower is better) Translates to: LQLLTFSNTALQ*DTTACILEWQK Trigger: TTTTTGCCATTCTAATATGCATGCAGTAGTATCTCATTGCAGTGCTGTGTTTGAGAATGTGAGTAGCTGCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428440.1 |
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| CDS CAA 72 bp | AGCCATGAAAAGACACAGTGGAAGCTTACATGCATATaGCAGAATGAAAGAAGCCAATCTAAAAAGGCTACG | + |
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Preference number: 6 (lower is better) Translates to: SHEKTQWKLTCI*QNERSQSKKAT Trigger: CGTAGCCTTTTTAGATTGGCTTCTTTCATTCTGCAATATGCATGTAAGCTTCCACTGTGTCTTTTCATGGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000428440.1 |
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| CDS CAA 90 bp | GAACTCTCATTCAGTGCTGATGGAAATACAAAATGGAGAATAGTTTaGTGGCATCTTAGAAAACTAAATCCACTCTTATTATACGACCCC | + |
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Preference number: 6 (lower is better) Translates to: ELSFSADGNTKWRIV*WHLRKLNPLLLYDP Trigger: GGGGTCGTATAATAAGAGTGGATTTAGTTTTCTAAGATGCCACAAAACTATTCTCCATTTTGTATTTCCATCAGCACTGAATGAGAGTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000428440.1 |
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| CDS GCA 72 bp | CCAAAGGAGTTGAAAACTTATGTCCACACAGAAACCTaGACACAGATGTTTATGGACGTTTTATTTATAATT | + |
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Preference number: 6 (lower is better) Translates to: PKELKTYVHTET*TQMFMDVLFII Trigger: AATTATAAATAAAACGTCCATAAACATCTGTGTGCAGGTTTCTGTGTGGACATAAGTTTTCAACTCCTTTGG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000428440.1 |
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