RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01187 (Homo sapiens)

Ensembl gene IDs: ENSG00000249601

Ensembl transcript IDs: ENST00000506431.2, ENST00000520275.1

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GGGTGGGCCCGCATGGCTCTCAGACTCCAAAATGTGAGTTTCATCTaGCTTCCACTGTTGTTCTTCTCAGTAGAGGTCTGCCTGCGCCAC +
Preference number: 5 (lower is better)
Translates to: GWARMALRLQNVSFI*LPLLFFSVEVCLRH
Trigger: GTGGCGCAGGCAGACCTCTACTGAGAAGAACAACAGTGGAAGGCAGATGAAACTCACATTTTGGAGTCTGAGAGCCATGCGGGCCCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS TCA 90 bp GTGACACAGAAACCACCATGTGAGGGAGGCTCTTCTGAGCAGAGCTaGAGCAGGGACTCCCTGCTTTTCTCTCAGAGATTTGGGGGTAAA +
Preference number: 5 (lower is better)
Translates to: VTQKPPCEGGSSEQS*SRDSLLFSQRFGGK
Trigger: TTTACCCCCAAATCTCTGAGAGAAAAGCAGGGAGTCCCTGCTTCAGCTCTGCTCAGAAGAGCCTCCCTCACATGGTGGTTTCTGTGTCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS GCA 90 bp CATGTGAGGGAGGCTCTTCTGAGCAGAGCTGAAGCAGGGACTCCCTaGTTTTCTCTCAGAGATTTGGGGGTAAAGTTACCATCAGACCCT +
Preference number: 5 (lower is better)
Translates to: HVREALLSRAEAGTP*FSLRDLGVKLPSDP
Trigger: AGGGTCTGATGGTAACTTTACCCCCAAATCTCTGAGAGAAAAGCAGGGAGTCCCTGCTTCAGCTCTGCTCAGAAGAGCCTCCCTCACATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS CCA 90 bp TCATGCTGCTGGACTGTTGCAGCCAGATGGGTTTGTACTATTTTCTaGCCTCAGGGTGCATTTCTTCACCAGGGTGCAGGAGGTATCAGC +
Preference number: 5 (lower is better)
Translates to: SCCWTVAARWVCTIF*PQGAFLHQGAGGIS
Trigger: GCTGATACCTCCTGCACCCTGGTGAAGAAATGCACCCTGAGGCCAGAAAATAGTACAAACCCATCTGGCTGCAACAGTCCAGCAGCATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS GCA 90 bp TCCTTCCAGGCTTCTTGTGCACACGCCAAAACCTGCACACATGTATaGATTTCTTCCTCTCTGTGCATCTCTCCTGCACATCTGGGCAAA +
Preference number: 5 (lower is better)
Translates to: SFQASCAHAKTCTHV*ISSSLCISPAHLGK
Trigger: TTTGCCCAGATGTGCAGGAGAGATGCACAGAGAGGAAGAAATGCATACATGTGTGCAGGTTTTGGCGTGTGCACAAGAAGCCTGGAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000506431.2
ENST00000520275.1
CDS GCA 90 bp CTCTGGCTCTACTACGTGACTTTGATCTTCATGCTGCTGGACTGTTaGAGCCAGATGGGTTTGTACTATTTTCTGGCCTCAGGGTGCATT +
Preference number: 5 (lower is better)
Translates to: LWLYYVTLIFMLLDC*SQMGLYYFLASGCI
Trigger: AATGCACCCTGAGGCCAGAAAATAGTACAAACCCATCTGGCTGCAACAGTCCAGCAGCATGAAGATCAAAGTCACGTAGTAGAGCCAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS CCA 90 bp CTGAGCCCATCTGATGCACTAGATTCATCTGGAGGAGCAGGTTTCTaGCAAGGAACTGAATTTGTGGGTTCCCCTAGGAATCTCTTGCAA +
Preference number: 5 (lower is better)
Translates to: LSPSDALDSSGGAGF*QGTEFVGSPRNLLQ
Trigger: TTGCAAGAGATTCCTAGGGGAACCCACAAATTCAGTTCCTTGCCAGAAACCTGCTCCTCCAGATGAATCTAGTGCATCAGATGGGCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS CCA 90 bp TTAGCACAATGCATGGCACATAGCAAGCACTTGGTGGCCGATCAATaGCAAATACGAACACTGGCTCGAGCTTACTGCCATGGTTTATCT +
Preference number: 5 (lower is better)
Translates to: LAQCMAHSKHLVADQ*QIRTLARAYCHGLS
Trigger: AGATAAACCATGGCAGTAAGCTCGAGCCAGTGTTCGTATTTGCCATTGATCGGCCACCAAGTGCTTGCTATGTGCCATGCATTGTGCTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS GCA 90 bp ATCCAAAGAAAATCCTTCCAGGCTTCTTGTGCACACGCCAAAACCTaGACACATGTATGCATTTCTTCCTCTCTGTGCATCTCTCCTGCA +
Preference number: 5 (lower is better)
Translates to: IQRKSFQASCAHAKT*THVCISSSLCISPA
Trigger: TGCAGGAGAGATGCACAGAGAGGAAGAAATGCATACATGTGTGCAGGTTTTGGCGTGTGCACAAGAAGCCTGGAAGGATTTTCTTTGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000506431.2
ENST00000520275.1
CDS TCA 90 bp ATGCTCCTAAACTCAGAAGTATTCAGAAAACCTACAGCAAGGTGGTaGGAGACTAGACTCTTCAAACCTCTGAGGTGCTTTTCTGTCCTC +
Preference number: 5 (lower is better)
Translates to: MLLNSEVFRKPTARW*ETRLFKPLRCFSVL
Trigger: GAGGACAGAAAAGCACCTCAGAGGTTTGAAGAGTCTAGTCTCTCACCACCTTGCTGTAGGTTTTCTGAATACTTCTGAGTTTAGGAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS GCA 90 bp GTTTCTGGCAAGGAACTGAATTTGTGGGTTCCCCTAGGAATCTCTTaGAACTTTTCTAGTGTGTTGGCTTCTGATTTCTCCCAAACACAC +
Preference number: 5 (lower is better)
Translates to: VSGKELNLWVPLGIS*NFSSVLASDFSQTH
Trigger: GTGTGTTTGGGAGAAATCAGAAGCCAACACACTAGAAAAGTTGCAAGAGATTCCTAGGGGAACCCACAAATTCAGTTCCTTGCCAGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS CCA 90 bp ATTTCTCCCAAACACACCGACTTGGCAATAATACCGAGTCTGAATTaGAAAGGCTTCATGAATATTAGGCCCAGGGCAAATTTCTCTCTG +
Preference number: 5 (lower is better)
Translates to: ISPKHTDLAIIPSLN*KGFMNIRPRANFSL
Trigger: CAGAGAGAAATTTGCCCTGGGCCTAATATTCATGAAGCCTTTCCAATTCAGACTCGGTATTATTGCCAAGTCGGTGTGTTTGGGAGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS TCA 90 bp AAAGGGGCAATTTCACTCACAACTGTTACACTTAAAAGCTCCATATaGAACAGGCATTCAAATAAGTCTCAGCAGCAAGGTGGTGAGAGA +
Preference number: 5 (lower is better)
Translates to: KGAISLTTVTLKSSI*NRHSNKSQQQGGER
Trigger: TCTCTCACCACCTTGCTGCTGAGACTTATTTGAATGCCTGTTTCATATGGAGCTTTTAAGTGTAACAGTTGTGAGTGAAATTGCCCCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000520275.1
CDS GCA 90 bp GTAAAGTTACCATCAGACCCTTCAGTTCAGCTGAAAACTCTGAGATaGCCAATACACTCCCATTTTCTACTTCAAGGAAACTTCACTAAA +
Preference number: 5 (lower is better)
Translates to: VKLPSDPSVQLKTLR*PIHSHFLLQGNFTK
Trigger: TTTAGTGAAGTTTCCTTGAAGTAGAAAATGGGAGTGTATTGGGCATCTCAGAGTTTTCAGCTGAACTGAAGGGTCTGATGGTAACTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS TCA 90 bp GAAAAGATAATAGCCTTGATTGAAATAGAAAGGCGTTACAGAAACTaGCACCAAACAACACAACAGACATCATCATCCCATCATAACCAT +
Preference number: 5 (lower is better)
Translates to: EKIIALIEIERRYRN*HQTTQQTSSSHHNH
Trigger: ATGGTTATGATGGGATGATGATGTCTGTTGTGTTGTTTGGTGTCAGTTTCTGTAACGCCTTTCTATTTCAATCAAGGCTATTATCTTTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS TCA 72 bp AAACCACCATGTGAGGGAGGCTCTTCTGAGCAGAGCTaGAGCAGGGACTCCCTGCTTTTCTCTCAGAGATTT +
Preference number: 6 (lower is better)
Translates to: KPPCEGGSSEQS*SRDSLLFSQRF
Trigger: AAATCTCTGAGAGAAAAGCAGGGAGTCCCTGCTTCAGCTCTGCTCAGAAGAGCCTCCCTCACATGGTGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS GCA 72 bp GAGGCTCTTCTGAGCAGAGCTGAAGCAGGGACTCCCTaGTTTTCTCTCAGAGATTTGGGGGTAAAGTTACCA +
Preference number: 6 (lower is better)
Translates to: EALLSRAEAGTP*FSLRDLGVKLP
Trigger: TGGTAACTTTACCCCCAAATCTCTGAGAGAAAAGCAGGGAGTCCCTGCTTCAGCTCTGCTCAGAAGAGCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS CCA 72 bp TGGACTGTTGCAGCCAGATGGGTTTGTACTATTTTCTaGCCTCAGGGTGCATTTCTTCACCAGGGTGCAGGA +
Preference number: 6 (lower is better)
Translates to: WTVAARWVCTIF*PQGAFLHQGAG
Trigger: TCCTGCACCCTGGTGAAGAAATGCACCCTGAGGCCAGAAAATAGTACAAACCCATCTGGCTGCAACAGTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS CCA 72 bp AGCACTTGGTGGCCGATCAATGGCAAATACGAACACTaGCTCGAGCTTACTGCCATGGTTTATCTTAGCAGC +
Preference number: 6 (lower is better)
Translates to: STWWPINGKYEH*LELTAMVYLSS
Trigger: GCTGCTAAGATAAACCATGGCAGTAAGCTCGAGCCAGTGTTCGTATTTGCCATTGATCGGCCACCAAGTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS CAA 72 bp GCTGAAGCAGGGACTCCCTGCTTTTCTCTCAGAGATTaGGGGGTAAAGTTACCATCAGACCCTTCAGTTCAG +
Preference number: 6 (lower is better)
Translates to: AEAGTPCFSLRD*GVKLPSDPSVQ
Trigger: CTGAACTGAAGGGTCTGATGGTAACTTTACCCCCAAATCTCTGAGAGAAAAGCAGGGAGTCCCTGCTTCAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS CAA 90 bp TCTCTGGCTCTACTACGTGACTTTGATCTTCATGCTGCTGGACTGTaGCAGCCAGATGGGTTTGTACTATTTTCTGGCCTCAGGGTGCAT +
Preference number: 6 (lower is better)
Translates to: SLALLRDFDLHAAGL*QPDGFVLFSGLRVH
Trigger: ATGCACCCTGAGGCCAGAAAATAGTACAAACCCATCTGGCTGCAACAGTCCAGCAGCATGAAGATCAAAGTCACGTAGTAGAGCCAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS CCA 72 bp ATGGCAAATACGAACACTGGCTCGAGCTTACTGCCATaGTTTATCTTAGCAGCTCCTGACTTGCCTGTTGAG +
Preference number: 6 (lower is better)
Translates to: MANTNTGSSLLP*FILAAPDLPVE
Trigger: CTCAACAGGCAAGTCAGGAGCTGCTAAGATAAACCATGGCAGTAAGCTCGAGCCAGTGTTCGTATTTGCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS GCA 72 bp ACATGTATGCATTTCTTCCTCTCTGTGCATCTCTCCTaGACATCTGGGCAAAAACCAATCTCTGCAGGTAGC +
Preference number: 6 (lower is better)
Translates to: TCMHFFLSVHLS*TSGQKPISAGS
Trigger: GCTACCTGCAGAGATTGGTTTTTGCCCAGATGTGCAGGAGAGATGCACAGAGAGGAAGAAATGCATACATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000506431.2
ENST00000520275.1
CDS GCA 72 bp AAATCCTTCCAGGCTTCTTGTGCACACGCCAAAACCTaGACACATGTATGCATTTCTTCCTCTCTGTGCATC +
Preference number: 6 (lower is better)
Translates to: KSFQASCAHAKT*THVCISSSLCI
Trigger: GATGCACAGAGAGGAAGAAATGCATACATGTGTGCAGGTTTTGGCGTGTGCACAAGAAGCCTGGAAGGATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000506431.2
ENST00000520275.1
CDS CCA 72 bp CTGGAGGAGCAGGTTTCTGGCAAGGAACTGAATTTGTaGGTTCCCCTAGGAATCTCTTGCAACTTTTCTAGT +
Preference number: 6 (lower is better)
Translates to: LEEQVSGKELNL*VPLGISCNFSS
Trigger: ACTAGAAAAGTTGCAAGAGATTCCTAGGGGAACCCACAAATTCAGTTCCTTGCCAGAAACCTGCTCCTCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS CAA 72 bp ATCTTCATGCTGCTGGACTGTTGCAGCCAGATGGGTTaGTACTATTTTCTGGCCTCAGGGTGCATTTCTTCA +
Preference number: 6 (lower is better)
Translates to: IFMLLDCCSQMG*YYFLASGCISS
Trigger: TGAAGAAATGCACCCTGAGGCCAGAAAATAGTACAAACCCATCTGGCTGCAACAGTCCAGCAGCATGAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS CAA 72 bp CATCTGGAGGAGCAGGTTTCTGGCAAGGAACTGAATTaGTGGGTTCCCCTAGGAATCTCTTGCAACTTTTCT +
Preference number: 6 (lower is better)
Translates to: HLEEQVSGKELN*WVPLGISCNFS
Trigger: AGAAAAGTTGCAAGAGATTCCTAGGGGAACCCACAAATTCAGTTCCTTGCCAGAAACCTGCTCCTCCAGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS GCA 72 bp TACTACGTGACTTTGATCTTCATGCTGCTGGACTGTTaGAGCCAGATGGGTTTGTACTATTTTCTGGCCTCA +
Preference number: 6 (lower is better)
Translates to: YYVTLIFMLLDC*SQMGLYYFLAS
Trigger: TGAGGCCAGAAAATAGTACAAACCCATCTGGCTGCAACAGTCCAGCAGCATGAAGATCAAAGTCACGTAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS CAA 72 bp GTGTGTTGGCTTCTGATTTCTCCCAAACACACCGACTaGGCAATAATACCGAGTCTGAATTGGAAAGGCTTC +
Preference number: 6 (lower is better)
Translates to: VCWLLISPKHTD*AIIPSLNWKGF
Trigger: GAAGCCTTTCCAATTCAGACTCGGTATTATTGCCAAGTCGGTGTGTTTGGGAGAAATCAGAAGCCAACACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000506431.2
CDS CAA 72 bp GTGTGTTTTCAGACAGCTTCCTCTCGGAAATCCATTTaGACTGTAGATCCAAAGAAAATCCTTCCAGGCTTC +
Preference number: 6 (lower is better)
Translates to: VCFQTASSRKSI*TVDPKKILPGF
Trigger: GAAGCCTGGAAGGATTTTCTTTGGATCTACAGTCAAAATGGATTTCCGAGAGGAAGCTGTCTGAAAACACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000506431.2
ENST00000520275.1
CDS TCA 72 bp ATAGCCTTGATTGAAATAGAAAGGCGTTACAGAAACTaGCACCAAACAACACAACAGACATCATCATCCCAT +
Preference number: 6 (lower is better)
Translates to: IALIEIERRYRN*HQTTQQTSSSH
Trigger: ATGGGATGATGATGTCTGTTGTGTTGTTTGGTGTCAGTTTCTGTAACGCCTTTCTATTTCAATCAAGGCTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000506431.2