Pregenerated sensors for LINC01185 (Homo sapiens)
Ensembl gene IDs: ENSG00000228414Ensembl transcript IDs: ENST00000439412.6, ENST00000452343.1
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TGCTTCTTGTTATTGAGCCTCCAGAAAATGCAGCCGGACCTAGCTTaGTTCCGGGAACAGGAGTGGGAGCCTCGGGGTACTGCAAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: CFLLLSLQKMQPDLA*FREQEWEPRGTARK Trigger: TTTCCTTGCAGTACCCCGAGGCTCCCACTCCTGTTCCCGGAACCAAGCTAGGTCCGGCTGCATTTTCTGGAGGCTCAATAACAAGAAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS GCA 90 bp | CAGGGCGGACAATCCAAGGAATGCCTGATCCATGGGAACTGGACTTaGCCAGGGTCTTTTCTGCCTCTAATAGGTTCCGAAGCAGGTTCT | + |
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Preference number: 5 (lower is better) Translates to: QGGQSKECLIHGNWT*PGSFLPLIGSEAGS Trigger: AGAACCTGCTTCGGAACCTATTAGAGGCAGAAAAGACCCTGGGCAAGTCCAGTTCCCATGGATCAGGCATTCCTTGGATTGTCCGCCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS GCA 90 bp | TCTAATAGGTTCCGAAGCAGGTTCTCCACATGTGCCCCTGCTCGATaGTCTCTCCCAGGTTCATTGCTCCTCCTATCCAAAGACTTCTGC | + |
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Preference number: 5 (lower is better) Translates to: SNRFRSRFSTCAPAR*SLPGSLLLLSKDFC Trigger: GCAGAAGTCTTTGGATAGGAGGAGCAATGAACCTGGGAGAGAGCATCGAGCAGGGGCACATGTGGAGAACCTGCTTCGGAACCTATTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS CCA 90 bp | CAAATGCAGGGCGGACAATCCAAGGAATGCCTGATCCATGGGAACTaGACTTGCCCAGGGTCTTTTCTGCCTCTAATAGGTTCCGAAGCA | + |
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Preference number: 5 (lower is better) Translates to: QMQGGQSKECLIHGN*TCPGSFLPLIGSEA Trigger: TGCTTCGGAACCTATTAGAGGCAGAAAAGACCCTGGGCAAGTCCAGTTCCCATGGATCAGGCATTCCTTGGATTGTCCGCCCTGCATTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS TCA 90 bp | TGTGTGCCAGTCACCAAGCCAGACACTGAGGAACACACGGATACCTaGGACAGTTCATGCTCTCAGGAGACTCTTCATCTGAGACAATCC | + |
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Preference number: 5 (lower is better) Translates to: CVPVTKPDTEEHTDT*DSSCSQETLHLRQS Trigger: GGATTGTCTCAGATGAAGAGTCTCCTGAGAGCATGAACTGTCTCAGGTATCCGTGTGTTCCTCAGTGTCTGGCTTGGTGACTGGCACACA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS TCA 90 bp | CCAGTATCTAGTGCAAGATTGTGTGCCAGTCACCAAGCCAGACACTaGGGAACACACGGATACCTGAGACAGTTCATGCTCTCAGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: PVSSARLCASHQARH*GTHGYLRQFMLSGD Trigger: GTCTCCTGAGAGCATGAACTGTCTCAGGTATCCGTGTGTTCCTCAGTGTCTGGCTTGGTGACTGGCACACAATCTTGCACTAGATACTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS GCA 90 bp | TCTCCCAGGTTCATTGCTCCTCCTATCCAAAGACTTCTGCCTGCTTaGCTCACTAATGGTGCCTCTTTTAGGTTGTGTCACAGCCTTCCC | + |
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Preference number: 5 (lower is better) Translates to: SPRFIAPPIQRLLPA*LTNGASFRLCHSLP Trigger: GGGAAGGCTGTGACACAACCTAAAAGAGGCACCATTAGTGAGGCAAGCAGGCAGAAGTCTTTGGATAGGAGGAGCAATGAACCTGGGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS CCA 90 bp | AAGCAGCAGGCAAAGAAAGGGGTCCTTATACCCAGCAGTGTCTCATaGGCTACAATTGAGTGTTCTGACTCCAGCCCACCCTACATCACT | + |
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Preference number: 5 (lower is better) Translates to: KQQAKKGVLIPSSVS*ATIECSDSSPPYIT Trigger: AGTGATGTAGGGTGGGCTGGAGTCAGAACACTCAATTGTAGCCCATGAGACACTGCTGGGTATAAGGACCCCTTTCTTTGCCTGCTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS CCA 90 bp | GAGAAGACAAATGCAGGGCGGACAATCCAAGGAATGCCTGATCCATaGGAACTGGACTTGCCCAGGGTCTTTTCTGCCTCTAATAGGTTC | + |
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Preference number: 5 (lower is better) Translates to: EKTNAGRTIQGMPDP*ELDLPRVFSASNRF Trigger: GAACCTATTAGAGGCAGAAAAGACCCTGGGCAAGTCCAGTTCCCATGGATCAGGCATTCCTTGGATTGTCCGCCCTGCATTTGTCTTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS TCA 90 bp | GTTGTGCCTAAACTCCAAAAGGGAGTGGGTATAATGAGGCTGGTCTaGCCCTCCTTCCCATTATGGCCAGGTAGTCTGTTTTTCGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: VVPKLQKGVGIMRLV*PSFPLWPGSLFFGC Trigger: ACAGCCGAAAAACAGACTACCTGGCCATAATGGGAAGGAGGGTCAGACCAGCCTCATTATACCCACTCCCTTTTGGAGTTTAGGCACAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS GCA 90 bp | CGATGCTCTCTCCCAGGTTCATTGCTCCTCCTATCCAAAGACTTCTaGCTGCTTGCCTCACTAATGGTGCCTCTTTTAGGTTGTGTCACA | + |
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Preference number: 5 (lower is better) Translates to: RCSLPGSLLLLSKDF*LLASLMVPLLGCVT Trigger: TGTGACACAACCTAAAAGAGGCACCATTAGTGAGGCAAGCAGGCAGAAGTCTTTGGATAGGAGGAGCAATGAACCTGGGAGAGAGCATCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS CCA 90 bp | AACATGTGCATCACACGTACGTACGTATTCCTCTGGTGCCCTCTCTaGGTTTATAAAGGTCTAGACTTCTCGCCAGTGATTAACTTCTGT | + |
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Preference number: 5 (lower is better) Translates to: NMCITRTYVFLWCPL*VYKGLDFSPVINFC Trigger: ACAGAAGTTAATCACTGGCGAGAAGTCTAGACCTTTATAAACCCAGAGAGGGCACCAGAGGAATACGTACGTACGTGTGATGCACATGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS CCA 90 bp | CATACAACACAGCCTTATTCAGAAGATGTCCAGTGTATAGAGGTTTaGGGCAAATCAGATGTCGAGGCACCTTCTCAGTTGTTTGAGAGT | + |
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Preference number: 5 (lower is better) Translates to: HTTQPYSEDVQCIEV*GKSDVEAPSQLFES Trigger: ACTCTCAAACAACTGAGAAGGTGCCTCGACATCTGATTTGCCCCAAACCTCTATACACTGGACATCTTCTGAATAAGGCTGTGTTGTATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS CCA 90 bp | ATTATTAATCTTGTTTATTGCTTGTTTTCCTCAATAGAACGTACATaGCATGAGCGCTGCAGGGTTTTTGTGATTTCAGTTCACTCCGTT | + |
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Preference number: 5 (lower is better) Translates to: IINLVYCLFSSIERT*HERCRVFVISVHSV Trigger: AACGGAGTGAACTGAAATCACAAAAACCCTGCAGCGCTCATGCCATGTACGTTCTATTGAGGAAAACAAGCAATAAACAAGATTAATAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS CAA 72 bp | GTTATTGAGCCTCCAGAAAATGCAGCCGGACCTAGCTaGGTTCCGGGAACAGGAGTGGGAGCCTCGGGGTAC | + |
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Preference number: 6 (lower is better) Translates to: VIEPPENAAGPS*VPGTGVGASGY Trigger: GTACCCCGAGGCTCCCACTCCTGTTCCCGGAACCAAGCTAGGTCCGGCTGCATTTTCTGGAGGCTCAATAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS CCA 72 bp | TTATTGAGCCTCCAGAAAATGCAGCCGGACCTAGCTTaGTTCCGGGAACAGGAGTGGGAGCCTCGGGGTACT | + |
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Preference number: 6 (lower is better) Translates to: LLSLQKMQPDLA*FREQEWEPRGT Trigger: AGTACCCCGAGGCTCCCACTCCTGTTCCCGGAACCAAGCTAGGTCCGGCTGCATTTTCTGGAGGCTCAATAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS CAA 90 bp | CTGCTTCTTGTTATTGAGCCTCCAGAAAATGCAGCCGGACCTAGCTaGGTTCCGGGAACAGGAGTGGGAGCCTCGGGGTACTGCAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: LLLVIEPPENAAGPS*VPGTGVGASGYCKE Trigger: TTCCTTGCAGTACCCCGAGGCTCCCACTCCTGTTCCCGGAACCAAGCTAGGTCCGGCTGCATTTTCTGGAGGCTCAATAACAAGAAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS GCA 72 bp | CATGTGCCCCTGCTCGATGCTCTCTCCCAGGTTCATTaGTCCTCCTATCCAAAGACTTCTGCCTGCTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: HVPLLDALSQVH*SSYPKTSACLP Trigger: AGGCAAGCAGGCAGAAGTCTTTGGATAGGAGGAGCAATGAACCTGGGAGAGAGCATCGAGCAGGGGCACATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS GCA 72 bp | GAGAGAAGACAAATGCAGGGCGGACAATCCAAGGAATaGCTGATCCATGGGAACTGGACTTGCCCAGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: ERRQMQGGQSKE*LIHGNWTCPGS Trigger: AGACCCTGGGCAAGTCCAGTTCCCATGGATCAGGCATTCCTTGGATTGTCCGCCCTGCATTTGTCTTCTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS CCA 72 bp | AATGCAGGGCGGACAATCCAAGGAATGCCTGATCCATaGGAACTGGACTTGCCCAGGGTCTTTTCTGCCTCT | + |
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Preference number: 6 (lower is better) Translates to: NAGRTIQGMPDP*ELDLPRVFSAS Trigger: AGAGGCAGAAAAGACCCTGGGCAAGTCCAGTTCCCATGGATCAGGCATTCCTTGGATTGTCCGCCCTGCATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS CAA 90 bp | AGGTTCTCCACATGTGCCCCTGCTCGATGCTCTCTCCCAGGTTCATaGCTCCTCCTATCCAAAGACTTCTGCCTGCTTGCCTCACTAATG | + |
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Preference number: 6 (lower is better) Translates to: RFSTCAPARCSLPGS*LLLSKDFCLLASLM Trigger: CATTAGTGAGGCAAGCAGGCAGAAGTCTTTGGATAGGAGGAGCAATGAACCTGGGAGAGAGCATCGAGCAGGGGCACATGTGGAGAACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS CCA 72 bp | GGCGGACAATCCAAGGAATGCCTGATCCATGGGAACTaGACTTGCCCAGGGTCTTTTCTGCCTCTAATAGGT | + |
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Preference number: 6 (lower is better) Translates to: GGQSKECLIHGN*TCPGSFLPLIG Trigger: ACCTATTAGAGGCAGAAAAGACCCTGGGCAAGTCCAGTTCCCATGGATCAGGCATTCCTTGGATTGTCCGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS TCA 72 bp | GTCACCAAGCCAGACACTGAGGAACACACGGATACCTaGGACAGTTCATGCTCTCAGGAGACTCTTCATCTG | + |
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Preference number: 6 (lower is better) Translates to: VTKPDTEEHTDT*DSSCSQETLHL Trigger: CAGATGAAGAGTCTCCTGAGAGCATGAACTGTCTCAGGTATCCGTGTGTTCCTCAGTGTCTGGCTTGGTGAC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS TCA 72 bp | AGTGCAAGATTGTGTGCCAGTCACCAAGCCAGACACTaGGGAACACACGGATACCTGAGACAGTTCATGCTC | + |
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Preference number: 6 (lower is better) Translates to: SARLCASHQARH*GTHGYLRQFML Trigger: GAGCATGAACTGTCTCAGGTATCCGTGTGTTCCTCAGTGTCTGGCTTGGTGACTGGCACACAATCTTGCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS CAA 72 bp | CAGACAAACTGGCTTCAAGGGGTGAAGGTGGTAATGTaGCAGGCAAGCAGCAGGCAAAGAAAGGGGTCCTTA | + |
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Preference number: 6 (lower is better) Translates to: QTNWLQGVKVVM*QASSRQRKGSL Trigger: TAAGGACCCCTTTCTTTGCCTGCTGCTTGCCTGCAACATTACCACCTTCACCCCTTGAAGCCAGTTTGTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS GCA 72 bp | CTCCCAGGTTCATTGCTCCTCCTATCCAAAGACTTCTaGCTGCTTGCCTCACTAATGGTGCCTCTTTTAGGT | + |
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Preference number: 6 (lower is better) Translates to: LPGSLLLLSKDF*LLASLMVPLLG Trigger: ACCTAAAAGAGGCACCATTAGTGAGGCAAGCAGGCAGAAGTCTTTGGATAGGAGGAGCAATGAACCTGGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS GCA 72 bp | CAATCCAAGGAATGCCTGATCCATGGGAACTGGACTTaGCCAGGGTCTTTTCTGCCTCTAATAGGTTCCGAA | + |
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Preference number: 6 (lower is better) Translates to: QSKECLIHGNWT*PGSFLPLIGSE Trigger: TTCGGAACCTATTAGAGGCAGAAAAGACCCTGGGCAAGTCCAGTTCCCATGGATCAGGCATTCCTTGGATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS CAA 90 bp | CAGCCCACCCTACATCACTGTGCAGTAGAAGGCACAACGTTATATTaGGACGCTAATAGGAGGCCCTCCTTTGATGAGCTGTGTGACTTT | + |
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Preference number: 6 (lower is better) Translates to: QPTLHHCAVEGTTLY*DANRRPSFDELCDF Trigger: AAAGTCACACAGCTCATCAAAGGAGGGCCTCCTATTAGCGTCCAAATATAACGTTGTGCCTTCTACTGCACAGTGATGTAGGGTGGGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS CAA 90 bp | ATCAATATGCAGACAAACTGGCTTCAAGGGGTGAAGGTGGTAATGTaGCAGGCAAGCAGCAGGCAAAGAAAGGGGTCCTTATACCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: INMQTNWLQGVKVVM*QASSRQRKGSLYPA Trigger: TGCTGGGTATAAGGACCCCTTTCTTTGCCTGCTGCTTGCCTGCAACATTACCACCTTCACCCCTTGAAGCCAGTTTGTCTGCATATTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS TCA 72 bp | AAACTCCAAAAGGGAGTGGGTATAATGAGGCTGGTCTaGCCCTCCTTCCCATTATGGCCAGGTAGTCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: KLQKGVGIMRLV*PSFPLWPGSLF Trigger: AAACAGACTACCTGGCCATAATGGGAAGGAGGGTCAGACCAGCCTCATTATACCCACTCCCTTTTGGAGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS GCA 72 bp | CTATGCCAAAGTAGCATATTTTGGGGTGCCGTGTTCTaGGCTGTCCTTCATATACCTGGCATACAGAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: LCQSSIFWGAVF*AVLHIPGIQKE Trigger: CTCCTTCTGTATGCCAGGTATATGAAGGACAGCGCAGAACACGGCACCCCAAAATATGCTACTTTGGCATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS TCA 72 bp | AAATCACCAGCAAGTCAAATCACAAAGAACCCAGGGTaGGGAGAAGCTCTAGCTGTGCAGACTTTCTGGGTT | + |
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Preference number: 6 (lower is better) Translates to: KSPASQITKNPG*GEALAVQTFWV Trigger: AACCCAGAAAGTCTGCACAGCTAGAGCTTCTCCTCACCCTGGGTTCTTTGTGATTTGACTTGCTGGTGATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS GCA 72 bp | AACATGTGCATCACACGTACGTACGTATTCCTCTGGTaGCCTCTCTGGGTTTATAAAGGTCTAGACTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: NMCITRTYVFLW*PLWVYKGLDFS Trigger: CGAGAAGTCTAGACCTTTATAAACCCAGAGAGGGCACCAGAGGAATACGTACGTACGTGTGATGCACATGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS CCA 72 bp | CAGCCTTATTCAGAAGATGTCCAGTGTATAGAGGTTTaGGGCAAATCAGATGTCGAGGCACCTTCTCAGTTG | + |
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Preference number: 6 (lower is better) Translates to: QPYSEDVQCIEV*GKSDVEAPSQL Trigger: CAACTGAGAAGGTGCCTCGACATCTGATTTGCCCCAAACCTCTATACACTGGACATCTTCTGAATAAGGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS CAA 72 bp | CTACATCACTGTGCAGTAGAAGGCACAACGTTATATTaGGACGCTAATAGGAGGCCCTCCTTTGATGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: LHHCAVEGTTLY*DANRRPSFDEL Trigger: CAGCTCATCAAAGGAGGGCCTCCTATTAGCGTCCAAATATAACGTTGTGCCTTCTACTGCACAGTGATGTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS CAA 72 bp | ACAGCCTTATTCAGAAGATGTCCAGTGTATAGAGGTTaGGGGCAAATCAGATGTCGAGGCACCTTCTCAGTT | + |
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Preference number: 6 (lower is better) Translates to: TALFRRCPVYRG*GQIRCRGTFSV Trigger: AACTGAGAAGGTGCCTCGACATCTGATTTGCCCCAAACCTCTATACACTGGACATCTTCTGAATAAGGCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS CAA 90 bp | ATTTGGACGCTAATAGGAGGCCCTCCTTTGATGAGCTGTGTGACTTaGAGTAAGTTACTTAACAGCTCTGATCTTCAGTTCCTCCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: IWTLIGGPPLMSCVT*SKLLNSSDLQFLLC Trigger: ACAGAGGAGGAACTGAAGATCAGAGCTGTTAAGTAACTTACTCAAAGTCACACAGCTCATCAAAGGAGGGCCTCCTATTAGCGTCCAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS CCA 72 bp | ATTAACATGTGCATCACACGTACGTACGTATTCCTCTaGTGCCCTCTCTGGGTTTATAAAGGTCTAGACTTC | + |
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Preference number: 6 (lower is better) Translates to: INMCITRTYVFL*CPLWVYKGLDF Trigger: GAAGTCTAGACCTTTATAAACCCAGAGAGGGCACCAGAGGAATACGTACGTACGTGTGATGCACATGTTAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS CCA 72 bp | CCTGTAAGCCTAAATCAAATCAATATGCAGACAAACTaGCTTCAAGGGGTGAAGGTGGTAATGTTGCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: PVSLNQINMQTN*LQGVKVVMLQA Trigger: TGCCTGCAACATTACCACCTTCACCCCTTGAAGCCAGTTTGTCTGCATATTGATTTGATTTAGGCTTACAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS CAA 72 bp | CTAATAGGAGGCCCTCCTTTGATGAGCTGTGTGACTTaGAGTAAGTTACTTAACAGCTCTGATCTTCAGTTC | + |
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Preference number: 6 (lower is better) Translates to: LIGGPPLMSCVT*SKLLNSSDLQF Trigger: GAACTGAAGATCAGAGCTGTTAAGTAACTTACTCAAAGTCACACAGCTCATCAAAGGAGGGCCTCCTATTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS TCA 72 bp | TTATTGCTTGTTTTCCTCAATAGAACGTACATGGCATaGGCGCTGCAGGGTTTTTGTGATTTCAGTTCACTC | + |
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Preference number: 6 (lower is better) Translates to: LLLVFLNRTYMA*ALQGFCDFSSL Trigger: GAGTGAACTGAAATCACAAAAACCCTGCAGCGCTCATGCCATGTACGTTCTATTGAGGAAAACAAGCAATAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS CAA 72 bp | CAACGTTATATTTGGACGCTAATAGGAGGCCCTCCTTaGATGAGCTGTGTGACTTTGAGTAAGTTACTTAAC | + |
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Preference number: 6 (lower is better) Translates to: QRYIWTLIGGPP*MSCVTLSKLLN Trigger: GTTAAGTAACTTACTCAAAGTCACACAGCTCATCAAAGGAGGGCCTCCTATTAGCGTCCAAATATAACGTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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| CDS CCA 72 bp | CTTGTTTATTGCTTGTTTTCCTCAATAGAACGTACATaGCATGAGCGCTGCAGGGTTTTTGTGATTTCAGTT | + |
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Preference number: 6 (lower is better) Translates to: LVYCLFSSIERT*HERCRVFVISV Trigger: AACTGAAATCACAAAAACCCTGCAGCGCTCATGCCATGTACGTTCTATTGAGGAAAACAAGCAATAAACAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000452343.1 |
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| CDS TCA 72 bp | AAAATGTTCCTTGAGAAGCACAATGGAAATAGACCCTaGAGTCCTGTAAGCCTAAATCAAATCAATATGCAG | + |
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Preference number: 6 (lower is better) Translates to: KMFLEKHNGNRP*SPVSLNQINMQ Trigger: CTGCATATTGATTTGATTTAGGCTTACAGGACTTCAGGGTCTATTTCCATTGTGCTTCTCAAGGAACATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439412.6 |
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