Pregenerated sensors for LINC01180 (Homo sapiens)
Ensembl gene IDs: ENSG00000266979Ensembl transcript IDs: ENST00000589259.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCTGGTTTTGGCAGGGTGCAAGAACTTCCATTTCTAATAAGTTCCTaGGTGGTGATGATGCTGTTGGTTGAAGGACCACACTTTGAGAAC | + |
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Preference number: 5 (lower is better) Translates to: SGFGRVQELPFLISS*VVMMLLVEGPHFEN Trigger: GTTCTCAAAGTGTGGTCCTTCAACCAACAGCATCATCACCACCCAGGAACTTATTAGAAATGGAAGTTCTTGCACCCTGCCAAAACCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000589259.1 |
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| CDS CCA 72 bp | GGCAGGGTGCAAGAACTTCCATTTCTAATAAGTTCCTaGGTGGTGATGATGCTGTTGGTTGAAGGACCACAC | + |
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Preference number: 6 (lower is better) Translates to: GRVQELPFLISS*VVMMLLVEGPH Trigger: GTGTGGTCCTTCAACCAACAGCATCATCACCACCCAGGAACTTATTAGAAATGGAAGTTCTTGCACCCTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000589259.1 |
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| CDS CAA 72 bp | CCTCAAGTCAGAGATGCCTGTGAGGAATTGCACGGTTaGAATCACAGCAGATTTGCAGCCTATTTAAGTTTT | + |
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Preference number: 6 (lower is better) Translates to: PQVRDACEELHG*NHSRFAAYLSF Trigger: AAAACTTAAATAGGCTGCAAATCTGCTGTGATTCAAACCGTGCAATTCCTCACAGGCATCTCTGACTTGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000589259.1 |
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| CDS CAA 72 bp | CCATTTCTAATAAGTTCCTGGGTGGTGATGATGCTGTaGGTTGAAGGACCACACTTTGAGAACCACTTATCT | + |
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Preference number: 6 (lower is better) Translates to: PFLISSWVVMML*VEGPHFENHLS Trigger: AGATAAGTGGTTCTCAAAGTGTGGTCCTTCAACCAACAGCATCATCACCACCCAGGAACTTATTAGAAATGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000589259.1 |
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| CDS CCA 72 bp | TTATATACTGACTTAGAATTATATGATTACTTCCTATaGAGGGTTAATTCCCTGGCATTTAGGTTGAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: LYTDLELYDYFL*RVNSLAFRLSP Trigger: GGGGCTCAACCTAAATGCCAGGGAATTAACCCTCCATAGGAAGTAATCATATAATTCTAAGTCAGTATATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000589259.1 |
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