Pregenerated sensors for LINC01179 (Homo sapiens)
Ensembl gene IDs: ENSG00000249500Ensembl transcript IDs: ENST00000507838.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GAAACTTCTCTGGAGAGAATTCAAGTCTGGGCAGTATGGCTGGCATaGGCCTGCGGAGAGATTACTTCAGTGACCACTGAAACAAACACC | + |
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Preference number: 5 (lower is better) Translates to: ETSLERIQVWAVWLA*ACGEITSVTTETNT Trigger: GGTGTTTGTTTCAGTGGTCACTGAAGTAATCTCTCCGCAGGCCCATGCCAGCCATACTGCCCAGACTTGAATTCTCTCCAGAGAAGTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS TCA 90 bp | GCATTATGCAATGGAATGCCGCATTTCCTTAAGGTCTCGACCTGTTaGGTCAGTGGGCATGAGGTGCATTTGGTTGAGGTGCCCTTAGTT | + |
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Preference number: 5 (lower is better) Translates to: ALCNGMPHFLKVSTC*VSGHEVHLVEVPLV Trigger: AACTAAGGGCACCTCAACCAAATGCACCTCATGCCCACTGACTCAACAGGTCGAGACCTTAAGGAAATGCGGCATTCCATTGCATAATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS TCA 90 bp | TTTCCTTTTTCCTTCAGTAGTCCTTTCTTTACTGGGGATCTTGGATaGGAAACTTCTCTGGAGAGAATTCAAGTCTGGGCAGTATGGCTG | + |
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Preference number: 5 (lower is better) Translates to: FPFSFSSPFFTGDLG*ETSLERIQVWAVWL Trigger: CAGCCATACTGCCCAGACTTGAATTCTCTCCAGAGAAGTTTCTCATCCAAGATCCCCAGTAAAGAAAGGACTACTGAAGGAAAAAGGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS CCA 90 bp | AAGAATATAGTTATTAGTAGTCCTATTAAAGAATCACTGTACCAGTaGCTAAGACTCTGGAGCCAGATTGCTTGGGTTCAAACCCTAGCT | + |
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Preference number: 5 (lower is better) Translates to: KNIVISSPIKESLYQ*LRLWSQIAWVQTLA Trigger: AGCTAGGGTTTGAACCCAAGCAATCTGGCTCCAGAGTCTTAGCCACTGGTACAGTGATTCTTTAATAGGACTACTAATAACTATATTCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS CCA 72 bp | CTGGAGAGAATTCAAGTCTGGGCAGTATGGCTGGCATaGGCCTGCGGAGAGATTACTTCAGTGACCACTGAA | + |
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Preference number: 6 (lower is better) Translates to: LERIQVWAVWLA*ACGEITSVTTE Trigger: TTCAGTGGTCACTGAAGTAATCTCTCCGCAGGCCCATGCCAGCCATACTGCCCAGACTTGAATTCTCTCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS CAA 90 bp | AGGATCCGTTCTCAGAGGTCTGTGTACCAACTCCATGGTGCTTCTTaGTTAGCCCTCTGGGTTCTGTCCTTGGTCCCAAAGCAGATGTTC | + |
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Preference number: 6 (lower is better) Translates to: RIRSQRSVYQLHGAS*LALWVLSLVPKQMF Trigger: GAACATCTGCTTTGGGACCAAGGACAGAACCCAGAGGGCTAACAAAGAAGCACCATGGAGTTGGTACACAGACCTCTGAGAACGGATCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS GCA 72 bp | GATCCGTTCTCAGAGGTCTGTGTACCAACTCCATGGTaGTTCTTTGTTAGCCCTCTGGGTTCTGTCCTTGGT | + |
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Preference number: 6 (lower is better) Translates to: DPFSEVCVPTPW*FFVSPLGSVLG Trigger: ACCAAGGACAGAACCCAGAGGGCTAACAAAGAAGCACCATGGAGTTGGTACACAGACCTCTGAGAACGGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS CAA 72 bp | TCTCAGAGGTCTGTGTACCAACTCCATGGTGCTTCTTaGTTAGCCCTCTGGGTTCTGTCCTTGGTCCCAAAG | + |
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Preference number: 6 (lower is better) Translates to: SQRSVYQLHGAS*LALWVLSLVPK Trigger: CTTTGGGACCAAGGACAGAACCCAGAGGGCTAACAAAGAAGCACCATGGAGTTGGTACACAGACCTCTGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS TCA 72 bp | AATGGAATGCCGCATTTCCTTAAGGTCTCGACCTGTTaGGTCAGTGGGCATGAGGTGCATTTGGTTGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: NGMPHFLKVSTC*VSGHEVHLVEV Trigger: CACCTCAACCAAATGCACCTCATGCCCACTGACTCAACAGGTCGAGACCTTAAGGAAATGCGGCATTCCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS GCA 72 bp | AGAATTCAAGTCTGGGCAGTATGGCTGGCATGGGCCTaGGGAGAGATTACTTCAGTGACCACTGAAACAAAC | + |
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Preference number: 6 (lower is better) Translates to: RIQVWAVWLAWA*GEITSVTTETN Trigger: GTTTGTTTCAGTGGTCACTGAAGTAATCTCTCCGCAGGCCCATGCCAGCCATACTGCCCAGACTTGAATTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS CCA 72 bp | CTGTACCAGTGGCTAAGACTCTGGAGCCAGATTGCTTaGGTTCAAACCCTAGCTCTGACACTTTCTAGCTAC | + |
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Preference number: 6 (lower is better) Translates to: LYQWLRLWSQIA*VQTLALTLSSY Trigger: GTAGCTAGAAAGTGTCAGAGCTAGGGTTTGAACCCAAGCAATCTGGCTCCAGAGTCTTAGCCACTGGTACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS CAA 90 bp | AGTGGGCATGAGGTGCATTTGGTTGAGGTGCCCTTAGTTGACATCTaGAAATACTCAAATCATGAGCCTCACTCCACCATTGCTCACCAA | + |
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Preference number: 6 (lower is better) Translates to: SGHEVHLVEVPLVDI*KYSNHEPHSTIAHQ Trigger: TTGGTGAGCAATGGTGGAGTGAGGCTCATGATTTGAGTATTTCAAGATGTCAACTAAGGGCACCTCAACCAAATGCACCTCATGCCCACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS GCA 72 bp | TCCCAAAGCAGATGTTCGCTAGGAGCATTTTCCTTCTaGAGCATGGAGAGTCATAGTTTCTCTGCTCATTTG | + |
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Preference number: 6 (lower is better) Translates to: SQSRCSLGAFSF*SMESHSFSAHL Trigger: CAAATGAGCAGAGAAACTATGACTCTCCATGCTGCAGAAGGAAAATGCTCCTAGCGAACATCTGCTTTGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS TCA 72 bp | TCCTTCAGTAGTCCTTTCTTTACTGGGGATCTTGGATaGGAAACTTCTCTGGAGAGAATTCAAGTCTGGGCA | + |
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Preference number: 6 (lower is better) Translates to: SFSSPFFTGDLG*ETSLERIQVWA Trigger: TGCCCAGACTTGAATTCTCTCCAGAGAAGTTTCTCATCCAAGATCCCCAGTAAAGAAAGGACTACTGAAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS CAA 72 bp | GAGGTGCATTTGGTTGAGGTGCCCTTAGTTGACATCTaGAAATACTCAAATCATGAGCCTCACTCCACCATT | + |
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Preference number: 6 (lower is better) Translates to: EVHLVEVPLVDI*KYSNHEPHSTI Trigger: AATGGTGGAGTGAGGCTCATGATTTGAGTATTTCAAGATGTCAACTAAGGGCACCTCAACCAAATGCACCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS CAA 72 bp | TACCCTTGTGAAAGGAGACACCATCTCTCCTCATTCTaGGCGTGCTCAATTCAATCAGATGTGGTTTTTCTA | + |
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Preference number: 6 (lower is better) Translates to: YPCERRHHLSSF*ACSIQSDVVFL Trigger: TAGAAAAACCACATCTGATTGAATTGAGCACGCCAAGAATGAGGAGAGATGGTGTCTCCTTTCACAAGGGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS CCA 72 bp | GTTATTAGTAGTCCTATTAAAGAATCACTGTACCAGTaGCTAAGACTCTGGAGCCAGATTGCTTGGGTTCAA | + |
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Preference number: 6 (lower is better) Translates to: VISSPIKESLYQ*LRLWSQIAWVQ Trigger: TTGAACCCAAGCAATCTGGCTCCAGAGTCTTAGCCACTGGTACAGTGATTCTTTAATAGGACTACTAATAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS TCA 72 bp | CTTGGAAATGATATTGGATGCGCAGTGGTTGAAGGGTaGGGAAATGTGATTTGTGATCTCATCAGTACAATT | + |
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Preference number: 6 (lower is better) Translates to: LGNDIGCAVVEG*GNVICDLISTI Trigger: AATTGTACTGATGAGATCACAAATCACATTTCCTCACCCTTCAACCACTGCGCATCCAATATCATTTCCAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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| CDS CAA 72 bp | CTTTTTCCTTCAGTAGTCCTTTCTTTACTGGGGATCTaGGATGAGAAACTTCTCTGGAGAGAATTCAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: LFPSVVLSLLGI*DEKLLWREFKS Trigger: AGACTTGAATTCTCTCCAGAGAAGTTTCTCATCCAAGATCCCCAGTAAAGAAAGGACTACTGAAGGAAAAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000507838.1 |
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