Pregenerated sensors for LINC01177 (Homo sapiens)
Ensembl gene IDs: ENSG00000261397Ensembl transcript IDs: ENST00000568030.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGTGTTCGTTGGTGGGCTGGCCCCTGTGGAGATGTCTTTCTTCAGTaGGCACCTGCCCAATCCCCTTCCTCATTCCCTTCACACACCTGG | + |
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Preference number: 5 (lower is better) Translates to: GVRWWAGPCGDVFLQ*APAQSPSSFPSHTW Trigger: CCAGGTGTGTGAAGGGAATGAGGAAGGGGATTGGGCAGGTGCTCACTGAAGAAAGACATCTCCACAGGGGCCAGCCCACCAACGAACACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000568030.1 |
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| CDS GCA 90 bp | TTGGTGGGCTGGCCCCTGTGGAGATGTCTTTCTTCAGTGAGCACCTaGCCAATCCCCTTCCTCATTCCCTTCACACACCTGGCTTTGTGG | + |
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Preference number: 5 (lower is better) Translates to: LVGWPLWRCLSSVST*PIPFLIPFTHLALW Trigger: CCACAAAGCCAGGTGTGTGAAGGGAATGAGGAAGGGGATTGGGCAGGTGCTCACTGAAGAAAGACATCTCCACAGGGGCCAGCCCACCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000568030.1 |
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| CDS CCA 90 bp | ACCTGCCCAATCCCCTTCCTCATTCCCTTCACACACCTGGCTTTGTaGTCACCTTTCCCTGCATGTTGGTCCGGCTTGTCCTGTCAGGCT | + |
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Preference number: 5 (lower is better) Translates to: TCPIPFLIPFTHLAL*SPFPACWSGLSCQA Trigger: AGCCTGACAGGACAAGCCGGACCAACATGCAGGGAAAGGTGACCACAAAGCCAGGTGTGTGAAGGGAATGAGGAAGGGGATTGGGCAGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568030.1 |
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| CDS CCA 90 bp | CAGCTGGAATCAGGAAGAAGGTGTTCGTTGGTGGGCTGGCCCCTGTaGAGATGTCTTTCTTCAGTGAGCACCTGCCCAATCCCCTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: QLESGRRCSLVGWPL*RCLSSVSTCPIPFL Trigger: GAGGAAGGGGATTGGGCAGGTGCTCACTGAAGAAAGACATCTCCACAGGGGCCAGCCCACCAACGAACACCTTCTTCCTGATTCCAGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000568030.1 |
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| CDS CCA 90 bp | TCCAAGGCTCAGCTGGAATCAGGAAGAAGGTGTTCGTTGGTGGGCTaGCCCCTGTGGAGATGTCTTTCTTCAGTGAGCACCTGCCCAATC | + |
|
Preference number: 5 (lower is better) Translates to: SKAQLESGRRCSLVG*PLWRCLSSVSTCPI Trigger: GATTGGGCAGGTGCTCACTGAAGAAAGACATCTCCACAGGGGCCAGCCCACCAACGAACACCTTCTTCCTGATTCCAGCTGAGCCTTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568030.1 |
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| CDS GCA 90 bp | CTTCCTCATTCCCTTCACACACCTGGCTTTGTGGTCACCTTTCCCTaGATGTTGGTCCGGCTTGTCCTGTCAGGCTGTGTCATGCTGAAG | + |
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Preference number: 5 (lower is better) Translates to: LPHSLHTPGFVVTFP*MLVRLVLSGCVMLK Trigger: CTTCAGCATGACACAGCCTGACAGGACAAGCCGGACCAACATGCAGGGAAAGGTGACCACAAAGCCAGGTGTGTGAAGGGAATGAGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568030.1 |
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| CDS CAA 90 bp | AGCACCTGCCCAATCCCCTTCCTCATTCCCTTCACACACCTGGCTTaGTGGTCACCTTTCCCTGCATGTTGGTCCGGCTTGTCCTGTCAG | + |
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Preference number: 6 (lower is better) Translates to: STCPIPFLIPFTHLA*WSPFPACWSGLSCQ Trigger: CTGACAGGACAAGCCGGACCAACATGCAGGGAAAGGTGACCACAAAGCCAGGTGTGTGAAGGGAATGAGGAAGGGGATTGGGCAGGTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568030.1 |
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| CDS TCA 72 bp | TGGTGGGCTGGCCCCTGTGGAGATGTCTTTCTTCAGTaGGCACCTGCCCAATCCCCTTCCTCATTCCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: WWAGPCGDVFLQ*APAQSPSSFPS Trigger: TGAAGGGAATGAGGAAGGGGATTGGGCAGGTGCTCACTGAAGAAAGACATCTCCACAGGGGCCAGCCCACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000568030.1 |
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| CDS GCA 72 bp | TCCCTTCACACACCTGGCTTTGTGGTCACCTTTCCCTaGATGTTGGTCCGGCTTGTCCTGTCAGGCTGTGTC | + |
|
Preference number: 6 (lower is better) Translates to: SLHTPGFVVTFP*MLVRLVLSGCV Trigger: GACACAGCCTGACAGGACAAGCCGGACCAACATGCAGGGAAAGGTGACCACAAAGCCAGGTGTGTGAAGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568030.1 |
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| CDS CCA 72 bp | TCAGGAAGAAGGTGTTCGTTGGTGGGCTGGCCCCTGTaGAGATGTCTTTCTTCAGTGAGCACCTGCCCAATC | + |
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Preference number: 6 (lower is better) Translates to: SGRRCSLVGWPL*RCLSSVSTCPI Trigger: GATTGGGCAGGTGCTCACTGAAGAAAGACATCTCCACAGGGGCCAGCCCACCAACGAACACCTTCTTCCTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568030.1 |
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| CDS CCA 72 bp | CAGCTGGAATCAGGAAGAAGGTGTTCGTTGGTGGGCTaGCCCCTGTGGAGATGTCTTTCTTCAGTGAGCACC | + |
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Preference number: 6 (lower is better) Translates to: QLESGRRCSLVG*PLWRCLSSVST Trigger: GGTGCTCACTGAAGAAAGACATCTCCACAGGGGCCAGCCCACCAACGAACACCTTCTTCCTGATTCCAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568030.1 |
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| CDS CCA 72 bp | CCAAGGCTCAGCTGGAATCAGGAAGAAGGTGTTCGTTaGTGGGCTGGCCCCTGTGGAGATGTCTTTCTTCAG | + |
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Preference number: 6 (lower is better) Translates to: PRLSWNQEEGVR*WAGPCGDVFLQ Trigger: CTGAAGAAAGACATCTCCACAGGGGCCAGCCCACCAACGAACACCTTCTTCCTGATTCCAGCTGAGCCTTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568030.1 |
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| CDS CAA 72 bp | TCCAAGGCTCAGCTGGAATCAGGAAGAAGGTGTTCGTaGGTGGGCTGGCCCCTGTGGAGATGTCTTTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SKAQLESGRRCS*VGWPLWRCLSS Trigger: TGAAGAAAGACATCTCCACAGGGGCCAGCCCACCAACGAACACCTTCTTCCTGATTCCAGCTGAGCCTTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568030.1 |
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| CDS TCA 72 bp | TTATTTGAGGCCTTTGAATTGCTTCTGTGGGCAGGCTaGGGGAGTCAGACAGCACATCTTCATTTTCACAGG | + |
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Preference number: 6 (lower is better) Translates to: LFEAFELLLWAG*GSQTAHLHFHR Trigger: CCTGTGAAAATGAAGATGTGCTGTCTGACTCCCTCAGCCTGCCCACAGAAGCAATTCAAAGGCCTCAAATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000568030.1 |
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