Pregenerated sensors for LINC01176 (Homo sapiens)
Ensembl gene IDs: ENSG00000281404Ensembl transcript IDs: ENST00000414621.1, ENST00000628121.1, ENST00000653239.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTGCAGGTTGTACAGGAAGCATGGTGCTGGCATCTGCTTAGCTTCTaGAGAGGCGTCAGGGAACTTTTACTCATGGCAGCAGGCAAAGCA | + |
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Preference number: 5 (lower is better) Translates to: LQVVQEAWCWHLLSF*RGVRELLLMAAGKA Trigger: TGCTTTGCCTGCTGCCATGAGTAAAAGTTCCCTGACGCCTCTCCAGAAGCTAAGCAGATGCCAGCACCATGCTTCCTGTACAACCTGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653239.1 |
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| CDS TCA 90 bp | AGGATTCCCGAATCCTGTCCCAGCCCACCCACTCCACAACCTTCTTaGCCTCTGTCAAGCAGCTCATCTTTTTGTGGGTCTAGGATACAA | + |
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Preference number: 5 (lower is better) Translates to: RIPESCPSPPTPQPS*PLSSSSSFCGSRIQ Trigger: TTGTATCCTAGACCCACAAAAAGATGAGCTGCTTGACAGAGGTCAAGAAGGTTGTGGAGTGGGTGGGCTGGGACAGGATTCGGGAATCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653239.1 |
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| CDS GCA 90 bp | GCCAATAAGTTCTGCAGGTTGTACAGGAAGCATGGTGCTGGCATCTaGTTAGCTTCTGGAGAGGCGTCAGGGAACTTTTACTCATGGCAG | + |
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Preference number: 5 (lower is better) Translates to: ANKFCRLYRKHGAGI*LASGEASGNFYSWQ Trigger: CTGCCATGAGTAAAAGTTCCCTGACGCCTCTCCAGAAGCTAAGCAGATGCCAGCACCATGCTTCCTGTACAACCTGCAGAACTTATTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653239.1 |
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| CDS GCA 90 bp | ACCCCTTTAGCTCCTTGTTATCCGATTCCTGTTGGTAGGGTCTCCTaGAAGCACACTGTCTTGCGTGGGCTCTGTGCTTTAACATGTTTT | + |
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Preference number: 5 (lower is better) Translates to: TPLAPCYPIPVGRVS*KHTVLRGLCALTCF Trigger: AAAACATGTTAAAGCACAGAGCCCACGCAAGACAGTGTGCTTGCAGGAGACCCTACCAACAGGAATCGGATAACAAGGAGCTAAAGGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414621.1 |
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| CDS GCA 90 bp | GGCTCTTTAGCTCCTTGTTATCCGATTCCTGTTGGTAGGGTCTCCTaGAAGCACACTGTCTTGCGTGGGCTCTGTGCTTTAACATGTTTT | + |
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Preference number: 5 (lower is better) Translates to: GSLAPCYPIPVGRVS*KHTVLRGLCALTCF Trigger: AAAACATGTTAAAGCACAGAGCCCACGCAAGACAGTGTGCTTGCAGGAGACCCTACCAACAGGAATCGGATAACAAGGAGCTAAAGAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628121.1 |
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| CDS CCA 90 bp | CAAGCACACTGTCTTGCGTGGGCTCTGTGCTTTAACATGTTTTCTTaGCTCAGCCAGGCCACAGAAACAGCAGACAAGTGTTTGTGGTAT | + |
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Preference number: 5 (lower is better) Translates to: QAHCLAWALCFNMFS*LSQATETADKCLWY Trigger: ATACCACAAACACTTGTCTGCTGTTTCTGTGGCCTGGCTGAGCCAAGAAAACATGTTAAAGCACAGAGCCCACGCAAGACAGTGTGCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628121.1 |
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| CDS TCA 90 bp | AACGTCAACCACCTGACGAGAATGAGTCTTCCAGCCTTGATCTGCTaGGTCATCGCCAACTCCAGCCAATACTTTAAACAGCCAGATCTT | + |
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Preference number: 5 (lower is better) Translates to: NVNHLTRMSLPALIC*VIANSSQYFKQPDL Trigger: AAGATCTGGCTGTTTAAAGTATTGGCTGGAGTTGGCGATGACTCAGCAGATCAAGGCTGGAAGACTCATTCTCGTCAGGTGGTTGACGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628121.1 |
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| CDS TCA 90 bp | CTCCTTGACCAACAGGGGATGGTGGAAGTGACTCTGTGTGACTTGTaGGACAAGATTCTAAAAGTCATGCACTTCTGCCTTGTTCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: LLDQQGMVEVTLCDL*DKILKVMHFCLVLL Trigger: CAAGAGAACAAGGCAGAAGTGCATGACTTTTAGAATCTTGTCTCACAAGTCACACAGAGTCACTTCCACCATCCCCTGTTGGTCAAGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000628121.1 ENST00000653239.1 |
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| CDS GCA 90 bp | TCCAAAGATGGGCATCACAATACATCCCATTCCATGTGCTTCTCTTaGTATGTAACACTGACACTCCTTCCAACAGGTGGTAGAAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: SKDGHHNTSHSMCFS*YVTLTLLPTGGRSL Trigger: CAGACTTCTACCACCTGTTGGAAGGAGTGTCAGTGTTACATAGCAAGAGAAGCACATGGAATGGGATGTATTGTGATGCCCATCTTTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000628121.1 ENST00000653239.1 |
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| CDS CCA 90 bp | CCTCCAGCCTCTGAAATATACAGTCTAACTCAAAGTCCCTTAAAATaGCAGTCTCCATACGAAGAAGACCCAAATACTTCCCAATATGTC | + |
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Preference number: 5 (lower is better) Translates to: PPASEIYSLTQSPLK*QSPYEEDPNTSQYV Trigger: GACATATTGGGAAGTATTTGGGTCTTCTTCGTATGGAGACTGCCATTTTAAGGGACTTTGAGTTAGACTGTATATTTCAGAGGCTGGAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653239.1 |
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| CDS TCA 90 bp | CTAAAATCTATTTCCCAGCCTTCTGTGCAGTTAGGTGTGGCCATATaGTTTAGCTCTAACTATTGGAATGTGGGCAAAAGAGATGTAAGT | + |
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Preference number: 5 (lower is better) Translates to: LKSISQPSVQLGVAI*FSSNYWNVGKRDVS Trigger: ACTTACATCTCTTTTGCCCACATTCCAATAGTTAGAGCTAAATCATATGGCCACACCTAACTGCACAGAAGGCTGGGAAATAGATTTTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653239.1 |
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| CDS TCA 90 bp | CTCCCATTAGGCTCTACCTCCAACAAAGGGAATTACAATTCAACATaGGGTTTAGAGGATACAACATCCAAACTATATCAGACAATAACC | + |
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Preference number: 5 (lower is better) Translates to: LPLGSTSNKGNYNST*GLEDTTSKLYQTIT Trigger: GGTTATTGTCTGATATAGTTTGGATGTTGTATCCTCTAAACCTCATGTTGAATTGTAATTCCCTTTGTTGGAGGTAGAGCCTAATGGGAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653239.1 |
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| CDS GCA 72 bp | GCTCCTTGTTATCCGATTCCTGTTGGTAGGGTCTCCTaGAAGCACACTGTCTTGCGTGGGCTCTGTGCTTTA | + |
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Preference number: 6 (lower is better) Translates to: APCYPIPVGRVS*KHTVLRGLCAL Trigger: TAAAGCACAGAGCCCACGCAAGACAGTGTGCTTGCAGGAGACCCTACCAACAGGAATCGGATAACAAGGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000414621.1 ENST00000628121.1 |
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| CDS CAA 90 bp | TGTTATCCGATTCCTGTTGGTAGGGTCTCCTGCAAGCACACTGTCTaGCGTGGGCTCTGTGCTTTAACATGTTTTCTTGGCTCAGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: CYPIPVGRVSCKHTV*RGLCALTCFLGSAR Trigger: CCTGGCTGAGCCAAGAAAACATGTTAAAGCACAGAGCCCACGCAAGACAGTGTGCTTGCAGGAGACCCTACCAACAGGAATCGGATAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000414621.1 ENST00000628121.1 |
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| CDS GCA 72 bp | TTCTGCAGGTTGTACAGGAAGCATGGTGCTGGCATCTaGTTAGCTTCTGGAGAGGCGTCAGGGAACTTTTAC | + |
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Preference number: 6 (lower is better) Translates to: FCRLYRKHGAGI*LASGEASGNFY Trigger: GTAAAAGTTCCCTGACGCCTCTCCAGAAGCTAAGCAGATGCCAGCACCATGCTTCCTGTACAACCTGCAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653239.1 |
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| CDS CAA 72 bp | GAGTCATCGCCAACTCCAGCCAATAAGTTCTGCAGGTaGTACAGGAAGCATGGTGCTGGCATCTGCTTAGCT | + |
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Preference number: 6 (lower is better) Translates to: ESSPTPANKFCR*YRKHGAGICLA Trigger: AGCTAAGCAGATGCCAGCACCATGCTTCCTGTACAACCTGCAGAACTTATTGGCTGGAGTTGGCGATGACTC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653239.1 |
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| CDS CAA 72 bp | ATTCCTGTTGGTAGGGTCTCCTGCAAGCACACTGTCTaGCGTGGGCTCTGTGCTTTAACATGTTTTCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: IPVGRVSCKHTV*RGLCALTCFLG Trigger: GCCAAGAAAACATGTTAAAGCACAGAGCCCACGCAAGACAGTGTGCTTGCAGGAGACCCTACCAACAGGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000414621.1 ENST00000628121.1 |
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| CDS CAA 72 bp | TCGCCAACTCCAGCCAATACTTTAAACAGCCAGATCTaGCTAGAAGTACCGCAAAGACAGCGCCAAGGGGAT | + |
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Preference number: 6 (lower is better) Translates to: SPTPANTLNSQI*LEVPQRQRQGD Trigger: ATCCCCTTGGCGCTGTCTTTGCGGTACTTCTAGCAAGATCTGGCTGTTTAAAGTATTGGCTGGAGTTGGCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628121.1 |
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| CDS CCA 72 bp | TGCACTTCTGCCTTGTTCTCTTGGGATAACTGCTCTTaGAACCCAGCCATTGCAGTGAGGAAGTCAAATAGC | + |
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Preference number: 6 (lower is better) Translates to: CTSALFSWDNCS*NPAIAVRKSNS Trigger: GCTATTTGACTTCCTCACTGCAATGGCTGGGTTCCAAGAGCAGTTATCCCAAGAGAACAAGGCAGAAGTGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000628121.1 ENST00000653239.1 |
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| CDS CAA 90 bp | GCTGAGTCATCGCCAACTCCAGCCAATACTTTAAACAGCCAGATCTaGCTAGAAGTACCGCAAAGACAGCGCCAAGGGGATAATGCTAAA | + |
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Preference number: 6 (lower is better) Translates to: AESSPTPANTLNSQI*LEVPQRQRQGDNAK Trigger: TTTAGCATTATCCCCTTGGCGCTGTCTTTGCGGTACTTCTAGCAAGATCTGGCTGTTTAAAGTATTGGCTGGAGTTGGCGATGACTCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628121.1 |
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| CDS GCA 72 bp | GGGCATCACAATACATCCCATTCCATGTGCTTCTCTTaGTATGTAACACTGACACTCCTTCCAACAGGTGGT | + |
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Preference number: 6 (lower is better) Translates to: GHHNTSHSMCFS*YVTLTLLPTGG Trigger: ACCACCTGTTGGAAGGAGTGTCAGTGTTACATAGCAAGAGAAGCACATGGAATGGGATGTATTGTGATGCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000628121.1 ENST00000653239.1 |
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| CDS CCA 72 bp | TATCAAGGTTACCTAAGATCTTGTCATTGGGGCATCTaGGGAATCCTGGGTGAAGACACACAGGAATTGGTG | + |
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Preference number: 6 (lower is better) Translates to: YQGYLRSCHWGI*GILGEDTQELV Trigger: CACCAATTCCTGTGTGTCTTCACCCAGGATTCCCCAGATGCCCCAATGACAAGATCTTAGGTAACCTTGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653239.1 |
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| CDS CAA 72 bp | TGGGCATCACAATACATCCCATTCCATGTGCTTCTCTaGCTATGTAACACTGACACTCCTTCCAACAGGTGG | + |
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Preference number: 6 (lower is better) Translates to: WASQYIPFHVLL*LCNTDTPSNRW Trigger: CCACCTGTTGGAAGGAGTGTCAGTGTTACATAGCAAGAGAAGCACATGGAATGGGATGTATTGTGATGCCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000628121.1 ENST00000653239.1 |
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| CDS TCA 72 bp | CAACAGGGGATGGTGGAAGTGACTCTGTGTGACTTGTaGGACAAGATTCTAAAAGTCATGCACTTCTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: QQGMVEVTLCDL*DKILKVMHFCL Trigger: AAGGCAGAAGTGCATGACTTTTAGAATCTTGTCTCACAAGTCACACAGAGTCACTTCCACCATCCCCTGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000628121.1 ENST00000653239.1 |
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| CDS CCA 72 bp | CTGATAATGTATCAAGGTTACCTAAGATCTTGTCATTaGGGCATCTGGGGAATCCTGGGTGAAGACACACAG | + |
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Preference number: 6 (lower is better) Translates to: LIMYQGYLRSCH*GIWGILGEDTQ Trigger: CTGTGTGTCTTCACCCAGGATTCCCCAGATGCCCCAATGACAAGATCTTAGGTAACCTTGATACATTATCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653239.1 |
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| CDS GCA 72 bp | TCCAAAGATGGGCATCACAATACATCCCATTCCATGTaGTTCTCTTGCTATGTAACACTGACACTCCTTCCA | + |
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Preference number: 6 (lower is better) Translates to: SKDGHHNTSHSM*FSCYVTLTLLP Trigger: TGGAAGGAGTGTCAGTGTTACATAGCAAGAGAAGCACATGGAATGGGATGTATTGTGATGCCCATCTTTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000628121.1 ENST00000653239.1 |
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| CDS TCA 72 bp | ATTTCCCAGCCTTCTGTGCAGTTAGGTGTGGCCATATaGTTTAGCTCTAACTATTGGAATGTGGGCAAAAGA | + |
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Preference number: 6 (lower is better) Translates to: ISQPSVQLGVAI*FSSNYWNVGKR Trigger: TCTTTTGCCCACATTCCAATAGTTAGAGCTAAATCATATGGCCACACCTAACTGCACAGAAGGCTGGGAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653239.1 |
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| CDS CAA 72 bp | GTGATGAAGACTCTTCCACTTGAATCCTCTAGTCCATaGCTTCTCATTATCACCCCTTTAGCTCCTTGTTAT | + |
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Preference number: 6 (lower is better) Translates to: VMKTLPLESSSP*LLIITPLAPCY Trigger: ATAACAAGGAGCTAAAGGGGTGATAATGAGAAGCAATGGACTAGAGGATTCAAGTGGAAGAGTCTTCATCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000414621.1 |
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| CDS TCA 72 bp | GGCTCTACCTCCAACAAAGGGAATTACAATTCAACATaGGGTTTAGAGGATACAACATCCAAACTATATCAG | + |
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Preference number: 6 (lower is better) Translates to: GSTSNKGNYNST*GLEDTTSKLYQ Trigger: CTGATATAGTTTGGATGTTGTATCCTCTAAACCTCATGTTGAATTGTAATTCCCTTTGTTGGAGGTAGAGCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653239.1 |
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| CDS CCA 72 bp | TCTGAAATATACAGTCTAACTCAAAGTCCCTTAAAATaGCAGTCTCCATACGAAGAAGACCCAAATACTTCC | + |
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Preference number: 6 (lower is better) Translates to: SEIYSLTQSPLK*QSPYEEDPNTS Trigger: GGAAGTATTTGGGTCTTCTTCGTATGGAGACTGCCATTTTAAGGGACTTTGAGTTAGACTGTATATTTCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653239.1 |
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| CDS CCA 72 bp | CTAAACCTCACACCTAATACGAACATTAACTCAAGATaGATCACAGATCCAAATGTGAAGAGTGAAACCATA | + |
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Preference number: 6 (lower is better) Translates to: LNLTPNTNINSR*ITDPNVKSETI Trigger: TATGGTTTCACTCTTCACATTTGGATCTGTGATCCATCTTGAGTTAATGTTCGTATTAGGTGTGAGGTTTAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653239.1 |
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| CDS TCA 72 bp | CAATACAGAAACAAACTGTGCTTATGGATTGAAAGATaGTTCAACATATTGAAGATGTCAATTCCCCTCAAG | + |
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Preference number: 6 (lower is better) Translates to: QYRNKLCLWIER*FNILKMSIPLK Trigger: CTTGAGGGGAATTGACATCTTCAATATGTTGAATCATCTTTCAATCCATAAGCACAGTTTGTTTCTGTATTG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653239.1 |
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