Pregenerated sensors for LINC01173 (Homo sapiens)

Ensembl gene IDs: ENSG00000280744

Ensembl transcript IDs: ENST00000629370.1

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AGGGTCTACAGACAGACGAACACGACGCTCTCCTCCAAAAACTCCTaGCTTCTTATGAAAGCTGCAGGCCTTGGGGAAACGAAGATAATT	+
Preference number: 5 (lower is better) Translates to: RVYRQTNTTLSSKNS*LLMKAAGLGETKII Trigger: AATTATCTTCGTTTCCCCAAGGCCTGCAGCTTTCATAAGAAGGCAGGAGTTTTTGGAGGAGAGCGTCGTGTTCGTCTGTCTGTAGACCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000629370.1
CDS CAA 72 bp	TTGGTGATAGTGTTGGCATTCTTATTTGGAGGCTATTaGTGTGTGAGTAGAAAGCAAATCAGTAATGATGCT	+
Preference number: 6 (lower is better) Translates to: LVIVLAFLFGGY*CVSRKQISNDA Trigger: AGCATCATTACTGATTTGCTTTCTACTCACACACAAATAGCCTCCAAATAAGAATGCCAACACTATCACCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000629370.1
CDS CAA 90 bp	TTTTCCTTTTTGGTGATAGTGTTGGCATTCTTATTTGGAGGCTATTaGTGTGTGAGTAGAAAGCAAATCAGTAATGATGCTGGTGTCATT	+
Preference number: 6 (lower is better) Translates to: FSFLVIVLAFLFGGY*CVSRKQISNDAGVI Trigger: AATGACACCAGCATCATTACTGATTTGCTTTCTACTCACACACAAATAGCCTCCAAATAAGAATGCCAACACTATCACCAAAAAGGAAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000629370.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu