Pregenerated sensors for LINC01170 (Homo sapiens)
Ensembl gene IDs: ENSG00000253807Ensembl transcript IDs: ENST00000519703.2, ENST00000628324.2, ENST00000653233.1, ENST00000657766.1, ENST00000662643.1
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGTAAGGCCACGGCAAAGTTGTCTCAGCGGTGTCACTGGCTGCCATaGGGCAGCCCTGCGGTGGAAGGGCCTGACCGGCCCGGGCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: SKATAKLSQRCHWLP*GSPAVEGPDRPGPG Trigger: CCCTGGCCCGGGCCGGTCAGGCCCTTCCACCGCAGGGCTGCCCCATGGCAGCCAGTGACACCGCTGAGACAACTTTGCCGTGGCCTTACT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653233.1 |
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| CDS CCA 90 bp | AGTTGTCTCAGCGGTGTCACTGGCTGCCATGGGGCAGCCCTGCGGTaGAAGGGCCTGACCGGCCCGGGCCAGGGTGACATCTCGGGATGT | + |
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Preference number: 5 (lower is better) Translates to: SCLSGVTGCHGAALR*KGLTGPGQGDISGC Trigger: ACATCCCGAGATGTCACCCTGGCCCGGGCCGGTCAGGCCCTTCCACCGCAGGGCTGCCCCATGGCAGCCAGTGACACCGCTGAGACAACT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653233.1 |
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| CDS GCA 90 bp | AGAGCGGCTTCCCAAAGCCCTGTCTGCCTGCTGCATTCTGGGCTTTaGAGGGGTGGCAGGATTGCGGCAGGCCGAGGCTCCTCAGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: RAASQSPVCLLHSGL*RGGRIAAGRGSSAR Trigger: CCTGGCTGAGGAGCCTCGGCCTGCCGCAATCCTGCCACCCCTGCAAAGCCCAGAATGCAGCAGGCAGACAGGGCTTTGGGAAGCCGCTCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628324.2 |
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| CDS CCA 90 bp | GGAAATGAAAGTAAGGCCACGGCAAAGTTGTCTCAGCGGTGTCACTaGCTGCCATGGGGCAGCCCTGCGGTGGAAGGGCCTGACCGGCCC | + |
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Preference number: 5 (lower is better) Translates to: GNESKATAKLSQRCH*LPWGSPAVEGPDRP Trigger: GGGCCGGTCAGGCCCTTCCACCGCAGGGCTGCCCCATGGCAGCCAGTGACACCGCTGAGACAACTTTGCCGTGGCCTTACTTTCATTTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653233.1 |
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| CDS CCA 90 bp | GTGGCAGGATTGCGGCAGGCCGAGGCTCCTCAGCCAGGAGCAGTTTaGAAAGACGTTTCGGCTCTCATCTCCTCCTTCCACCACCAATCC | + |
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Preference number: 5 (lower is better) Translates to: VAGLRQAEAPQPGAV*KDVSALISSFHHQS Trigger: GGATTGGTGGTGGAAGGAGGAGATGAGAGCCGAAACGTCTTTCCAAACTGCTCCTGGCTGAGGAGCCTCGGCCTGCCGCAATCCTGCCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628324.2 |
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| CDS CCA 90 bp | TACCTTGAAGAGTGGGTCAGTCGTCTGTCTTCAAGGTCAAACCTGTaGCTTCAGAGCGGCTTCCCAAAGCCCTGTCTGCCTGCTGCATTC | + |
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Preference number: 5 (lower is better) Translates to: YLEEWVSRLSSRSNL*LQSGFPKPCLPAAF Trigger: GAATGCAGCAGGCAGACAGGGCTTTGGGAAGCCGCTCTGAAGCCACAGGTTTGACCTTGAAGACAGACGACTGACCCACTCTTCAAGGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628324.2 |
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| CDS CCA 90 bp | TCTTTGTGCCTTGTGGGAGGCTCATTTGATTCTGCTCCACCTCCATaGCTTGCTTCTCCAGGTGTTGTGAGCCAGCTCCTCACTGATGTG | + |
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Preference number: 5 (lower is better) Translates to: SLCLVGGSFDSAPPP*LASPGVVSQLLTDV Trigger: CACATCAGTGAGGAGCTGGCTCACAACACCTGGAGAAGCAAGCCATGGAGGTGGAGCAGAATCAAATGAGCCTCCCACAAGGCACAAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS CCA 90 bp | TTATTTCCTCACAGTTCTGGAGCTACAAGTCCAAGACCATTGTGCTaGCCAGCTCAGTTTCTGGTGAGGGCTCCCTTCCTGACTGGTAGG | + |
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Preference number: 5 (lower is better) Translates to: LFPHSSGATSPRPLC*PAQFLVRAPFLTGR Trigger: CCTACCAGTCAGGAAGGGAGCCCTCACCAGAAACTGAGCTGGCCAGCACAATGGTCTTGGACTTGTAGCTCCAGAACTGTGAGGAAATAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628324.2 |
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| CDS TCA 90 bp | TGTCCTGACTTGCTGAGAATCTTTGTGCCTTGTGGGAGGCTCATTTaGTTCTGCTCCACCTCCATGGCTTGCTTCTCCAGGTGTTGTGAG | + |
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Preference number: 5 (lower is better) Translates to: CPDLLRIFVPCGRLI*FCSTSMACFSRCCE Trigger: CTCACAACACCTGGAGAAGCAAGCCATGGAGGTGGAGCAGAATCAAATGAGCCTCCCACAAGGCACAAAGATTCTCAGCAAGTCAGGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS CCA 90 bp | CCAAAGGAAGACACCGTACCTGTCAGGGGTCTGAAAGATTTCCTGTaGCCCTGGCAGTCTGGATTTAAGGCAGGCTTAGGGGAATTAGTA | + |
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Preference number: 5 (lower is better) Translates to: PKEDTVPVRGLKDFL*PWQSGFKAGLGELV Trigger: TACTAATTCCCCTAAGCCTGCCTTAAATCCAGACTGCCAGGGCCACAGGAAATCTTTCAGACCCCTGACAGGTACGGTGTCTTCCTTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653233.1 |
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| CDS CCA 90 bp | AGCCAGCTCCTCACTGATGTGTCAACACACCTGATTAGCCTGCAGTaGCAGGGTTTCCACACTTTCTGGAGAATACCCTTCATTTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: SQLLTDVSTHLISLQ*QGFHTFWRIPFISL Trigger: CAGAGAAATGAAGGGTATTCTCCAGAAAGTGTGGAAACCCTGCCACTGCAGGCTAATCAGGTGTGTTGACACATCAGTGAGGAGCTGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS CCA 90 bp | CCAAAGCCAAAGGAAGACACTGTCAGGGGTCTGAAAGATTTCCTGTaGCCCTGGCAGTCTGGATTTAAGGCAGGCTTAGGGGAATTAGTA | + |
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Preference number: 5 (lower is better) Translates to: PKPKEDTVRGLKDFL*PWQSGFKAGLGELV Trigger: TACTAATTCCCCTAAGCCTGCCTTAAATCCAGACTGCCAGGGCCACAGGAAATCTTTCAGACCCCTGACAGTGTCTTCCTTTGGCTTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000657766.1 |
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| CDS CCA 90 bp | GAAGACACCGTACCTGTCAGGGGTCTGAAAGATTTCCTGTGGCCCTaGCAGTCTGGATTTAAGGCAGGCTTAGGGGAATTAGTAAACAAA | + |
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Preference number: 5 (lower is better) Translates to: EDTVPVRGLKDFLWP*QSGFKAGLGELVNK Trigger: TTTGTTTACTAATTCCCCTAAGCCTGCCTTAAATCCAGACTGCCAGGGCCACAGGAAATCTTTCAGACCCCTGACAGGTACGGTGTCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653233.1 |
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| CDS TCA 90 bp | GTACAAGGTTATCTTTCCTGTAGAACATGTTGTCAGACGCACAGCTaGATTAAGGGTGGATCAGGCAGGCTGCTGCTTGGGAAACTGTTC | + |
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Preference number: 5 (lower is better) Translates to: VQGYLSCRTCCQTHS*IKGGSGRLLLGKLF Trigger: GAACAGTTTCCCAAGCAGCAGCCTGCCTGATCCACCCTTAATTCAGCTGTGCGTCTGACAACATGTTCTACAGGAAAGATAACCTTGTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000519703.2 |
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| CDS CCA 90 bp | CTCCTTTATCCCCATCAGAAAACTTCTCAAGCCTCTAGTCTGGCATaGAGATTAGCGTTGAGGCCTGTTGGTTCAATTAGCCTCTGTGCT | + |
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Preference number: 5 (lower is better) Translates to: LLYPHQKTSQASSLA*RLALRPVGSISLCA Trigger: AGCACAGAGGCTAATTGAACCAACAGGCCTCAACGCTAATCTCCATGCCAGACTAGAGGCTTGAGAAGTTTTCTGATGGGGATAAAGGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653233.1 |
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| CDS GCA 90 bp | TCAGACTTCTCTGCAACTCTTAACCCCTCCAGCCTTACTAATTTGTaGCTAACTGACACCCGGAACCAGACACAGCTAACAATCTCCAAA | + |
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Preference number: 5 (lower is better) Translates to: SDFSATLNPSSLTNL*LTDTRNQTQLTISK Trigger: TTTGGAGATTGTTAGCTGTGTCTGGTTCCGGGTGTCAGTTAGGCACAAATTAGTAAGGCTGGAGGGGTTAAGAGTTGCAGAGAAGTCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS TCA 90 bp | TCCCTCATGGATAAAGGGAGACAACTTATGAGGCCAGCATTACCTTaGTACCAAAGCCAAAGGAAGACACTTTTGGTACTGGAAACAGGA | + |
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Preference number: 5 (lower is better) Translates to: SLMDKGRQLMRPALP*YQSQRKTLLVLETG Trigger: TCCTGTTTCCAGTACCAAAAGTGTCTTCCTTTGGCTTTGGTATCAAGGTAATGCTGGCCTCATAAGTTGTCTCCCTTTATCCATGAGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519703.2 |
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| CDS GCA 90 bp | CAGCTAACAATCTCCAAAGTGGTGCACCTACCTATGCCCTTCACATaGAAAATATTTAGAGCCAAAAGAATGGACCACCTGCTTCCTGAA | + |
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Preference number: 5 (lower is better) Translates to: QLTISKVVHLPMPFT*KIFRAKRMDHLLPE Trigger: TTCAGGAAGCAGGTGGTCCATTCTTTTGGCTCTAAATATTTTGCATGTGAAGGGCATAGGTAGGTGCACCACTTTGGAGATTGTTAGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS CCA 90 bp | GGATGTGCTAATTATTCTTCTCTGCGACAGACCCTGGCACCTGTTTaGTTTCAAGTTGGGACAAAGAGAGATTCTAGAATGATAGAGGAA | + |
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Preference number: 5 (lower is better) Translates to: GCANYSSLRQTLAPV*FQVGTKRDSRMIEE Trigger: TTCCTCTATCATTCTAGAATCTCTCTTTGTCCCAACTTGAAACCAAACAGGTGCCAGGGTCTGTCGCAGAGAAGAATAATTAGCACATCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS CCA 90 bp | CCCATGTTAATGGATGTGCTAATTATTCTTCTCTGCGACAGACCCTaGCACCTGTTTGGTTTCAAGTTGGGACAAAGAGAGATTCTAGAA | + |
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Preference number: 5 (lower is better) Translates to: PMLMDVLIILLCDRP*HLFGFKLGQREILE Trigger: TTCTAGAATCTCTCTTTGTCCCAACTTGAAACCAAACAGGTGCCAGGGTCTGTCGCAGAGAAGAATAATTAGCACATCCATTAACATGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS GCA 90 bp | TCTGAGAGTTCCAAATCCTGTTTCTTAACACTAATCTTCGGATTTTaGTTTATGGACAAAAGTATGCTGCGGTTTCAGACATCCACTGGG | + |
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Preference number: 5 (lower is better) Translates to: SESSKSCFLTLIFGF*FMDKSMLRFQTSTG Trigger: CCCAGTGGATGTCTGAAACCGCAGCATACTTTTGTCCATAAAGCAAAATCCGAAGATTAGTGTTAAGAAACAGGATTTGGAACTCTCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000519703.2 |
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| CDS TCA 90 bp | TGCAAAATATTTAGAGCCAAAAGAATGGACCACCTGCTTCCTGAATaGTCAAGCAAGATGAGAAAGCACAAAGTGTTAGGTACACAGAAT | + |
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Preference number: 5 (lower is better) Translates to: CKIFRAKRMDHLLPE*SSKMRKHKVLGTQN Trigger: ATTCTGTGTACCTAACACTTTGTGCTTTCTCATCTTGCTTGATCATTCAGGAAGCAGGTGGTCCATTCTTTTGGCTCTAAATATTTTGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS CCA 72 bp | AGCGGTGTCACTGGCTGCCATGGGGCAGCCCTGCGGTaGAAGGGCCTGACCGGCCCGGGCCAGGGTGACATC | + |
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Preference number: 6 (lower is better) Translates to: SGVTGCHGAALR*KGLTGPGQGDI Trigger: GATGTCACCCTGGCCCGGGCCGGTCAGGCCCTTCCACCGCAGGGCTGCCCCATGGCAGCCAGTGACACCGCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653233.1 |
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| CDS CCA 72 bp | ACGGCAAAGTTGTCTCAGCGGTGTCACTGGCTGCCATaGGGCAGCCCTGCGGTGGAAGGGCCTGACCGGCCC | + |
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Preference number: 6 (lower is better) Translates to: TAKLSQRCHWLP*GSPAVEGPDRP Trigger: GGGCCGGTCAGGCCCTTCCACCGCAGGGCTGCCCCATGGCAGCCAGTGACACCGCTGAGACAACTTTGCCGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653233.1 |
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| CDS CAA 90 bp | CAGAGCGGCTTCCCAAAGCCCTGTCTGCCTGCTGCATTCTGGGCTTaGCAGGGGTGGCAGGATTGCGGCAGGCCGAGGCTCCTCAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: QSGFPKPCLPAAFWA*QGWQDCGRPRLLSQ Trigger: CTGGCTGAGGAGCCTCGGCCTGCCGCAATCCTGCCACCCCTGCAAAGCCCAGAATGCAGCAGGCAGACAGGGCTTTGGGAAGCCGCTCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628324.2 |
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| CDS CCA 72 bp | AGTAAGGCCACGGCAAAGTTGTCTCAGCGGTGTCACTaGCTGCCATGGGGCAGCCCTGCGGTGGAAGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: SKATAKLSQRCH*LPWGSPAVEGP Trigger: AGGCCCTTCCACCGCAGGGCTGCCCCATGGCAGCCAGTGACACCGCTGAGACAACTTTGCCGTGGCCTTACT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653233.1 |
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| CDS CCA 72 bp | TTGCGGCAGGCCGAGGCTCCTCAGCCAGGAGCAGTTTaGAAAGACGTTTCGGCTCTCATCTCCTCCTTCCAC | + |
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Preference number: 6 (lower is better) Translates to: LRQAEAPQPGAV*KDVSALISSFH Trigger: GTGGAAGGAGGAGATGAGAGCCGAAACGTCTTTCCAAACTGCTCCTGGCTGAGGAGCCTCGGCCTGCCGCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628324.2 |
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| CDS CCA 72 bp | CGATCACCTCGGAAGCCTGCGGTTTCAGACATCCACTaGGGGCCTTGGAAGATGTCCCTCATGGATAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: RSPRKPAVSDIH*GPWKMSLMDKG Trigger: CCCTTTATCCATGAGGGACATCTTCCAAGGCCCCCAGTGGATGTCTGAAACCGCAGGCTTCCGAGGTGATCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662643.1 |
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| CDS CCA 72 bp | ACTGGTAGGGGCCTGTCTTCTCCCTGTGTCCTCGCATaGCCTTTCCTTTGTGCTCCTGTAATCCCAGCACTT | + |
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Preference number: 6 (lower is better) Translates to: TGRGLSSPCVLA*PFLCAPVIPAL Trigger: AAGTGCTGGGATTACAGGAGCACAAAGGAAAGGCCATGCGAGGACACAGGGAGAAGACAGGCCCCTACCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628324.2 |
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| CDS CCA 72 bp | CACAGTTCTGGAGCTACAAGTCCAAGACCATTGTGCTaGCCAGCTCAGTTTCTGGTGAGGGCTCCCTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: HSSGATSPRPLC*PAQFLVRAPFL Trigger: CAGGAAGGGAGCCCTCACCAGAAACTGAGCTGGCCAGCACAATGGTCTTGGACTTGTAGCTCCAGAACTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628324.2 |
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| CDS CCA 72 bp | GACACCGTACCTGTCAGGGGTCTGAAAGATTTCCTGTaGCCCTGGCAGTCTGGATTTAAGGCAGGCTTAGGG | + |
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Preference number: 6 (lower is better) Translates to: DTVPVRGLKDFL*PWQSGFKAGLG Trigger: CCCTAAGCCTGCCTTAAATCCAGACTGCCAGGGCCACAGGAAATCTTTCAGACCCCTGACAGGTACGGTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653233.1 |
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| CDS CAA 90 bp | CATAAACTGAACAACCAAGGAAATGAAAGTAAGGCCACGGCAAAGTaGTCTCAGCGGTGTCACTGGCTGCCATGGGGCAGCCCTGCGGTG | + |
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Preference number: 6 (lower is better) Translates to: HKLNNQGNESKATAK*SQRCHWLPWGSPAV Trigger: CACCGCAGGGCTGCCCCATGGCAGCCAGTGACACCGCTGAGACAACTTTGCCGTGGCCTTACTTTCATTTCCTTGGTTGTTCAGTTTATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653233.1 |
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| CDS CAA 72 bp | AACAACCAAGGAAATGAAAGTAAGGCCACGGCAAAGTaGTCTCAGCGGTGTCACTGGCTGCCATGGGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: NNQGNESKATAK*SQRCHWLPWGS Trigger: GCTGCCCCATGGCAGCCAGTGACACCGCTGAGACAACTTTGCCGTGGCCTTACTTTCATTTCCTTGGTTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000653233.1 ENST00000657766.1 |
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| CDS CAA 72 bp | CGATCACCTCGGAAGCCTTATGAGGCCAGCATTACCTaGATACCAAAGCCAAAGGAAGACACTGTCAGGGGT | + |
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Preference number: 6 (lower is better) Translates to: RSPRKPYEASIT*IPKPKEDTVRG Trigger: ACCCCTGACAGTGTCTTCCTTTGGCTTTGGTATCAAGGTAATGCTGGCCTCATAAGGCTTCCGAGGTGATCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657766.1 |
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| CDS CAA 90 bp | TCTGAAGTGACTTGCTGCTGTGGTTCTTATGAGGCCAGCATTACCTaGATACCAAAGCCAAAGGAAGACACCGTACCTGTCAGGGGTCTG | + |
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Preference number: 6 (lower is better) Translates to: SEVTCCCGSYEASIT*IPKPKEDTVPVRGL Trigger: CAGACCCCTGACAGGTACGGTGTCTTCCTTTGGCTTTGGTATCAAGGTAATGCTGGCCTCATAAGAACCACAGCAGCAAGTCACTTCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653233.1 |
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| CDS CCA 72 bp | TATGGACAAAAGTATGCTGCGGTTTCAGACATCCACTaGGGGCCTTGGAAGATGTCCCTCATGGATAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: YGQKYAAVSDIH*GPWKMSLMDKG Trigger: CCCTTTATCCATGAGGGACATCTTCCAAGGCCCCCAGTGGATGTCTGAAACCGCAGCATACTTTTGTCCATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000519703.2 |
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| CDS CCA 72 bp | CTCACTGATGTGTCAACACACCTGATTAGCCTGCAGTaGCAGGGTTTCCACACTTTCTGGAGAATACCCTTC | + |
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Preference number: 6 (lower is better) Translates to: LTDVSTHLISLQ*QGFHTFWRIPF Trigger: GAAGGGTATTCTCCAGAAAGTGTGGAAACCCTGCCACTGCAGGCTAATCAGGTGTGTTGACACATCAGTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS CCA 72 bp | GAGACAAAGTTCTGCAGTCTTTACAGGAGCCATGGCTaGGGAGGCCTCAGGAAACTTACAATCATGGTGGTA | + |
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Preference number: 6 (lower is better) Translates to: ETKFCSLYRSHG*GGLRKLTIMVV Trigger: TACCACCATGATTGTAAGTTTCCTGAGGCCTCCCCAGCCATGGCTCCTGTAAAGACTGCAGAACTTTGTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000662643.1 |
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| CDS CCA 72 bp | AAGGGAGACAAAGTTCTGCAGTCTTTACAGGAGCCATaGCTGGGGAGGCCTCAGGAAACTTACAATCATGGT | + |
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Preference number: 6 (lower is better) Translates to: KGDKVLQSLQEP*LGRPQETYNHG Trigger: ACCATGATTGTAAGTTTCCTGAGGCCTCCCCAGCCATGGCTCCTGTAAAGACTGCAGAACTTTGTCTCCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662643.1 |
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| CDS CAA 90 bp | ACGTCAGACTTCTCTGCAACTCTTAACCCCTCCAGCCTTACTAATTaGTGCCTAACTGACACCCGGAACCAGACACAGCTAACAATCTCC | + |
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Preference number: 6 (lower is better) Translates to: TSDFSATLNPSSLTN*CLTDTRNQTQLTIS Trigger: GGAGATTGTTAGCTGTGTCTGGTTCCGGGTGTCAGTTAGGCACAAATTAGTAAGGCTGGAGGGGTTAAGAGTTGCAGAGAAGTCTGACGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS GCA 72 bp | TCTGCAACTCTTAACCCCTCCAGCCTTACTAATTTGTaGCTAACTGACACCCGGAACCAGACACAGCTAACA | + |
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Preference number: 6 (lower is better) Translates to: SATLNPSSLTNL*LTDTRNQTQLT Trigger: TGTTAGCTGTGTCTGGTTCCGGGTGTCAGTTAGGCACAAATTAGTAAGGCTGGAGGGGTTAAGAGTTGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS CCA 72 bp | CCCCATCAGAAAACTTCTCAAGCCTCTAGTCTGGCATaGAGATTAGCGTTGAGGCCTGTTGGTTCAATTAGC | + |
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Preference number: 6 (lower is better) Translates to: PHQKTSQASSLA*RLALRPVGSIS Trigger: GCTAATTGAACCAACAGGCCTCAACGCTAATCTCCATGCCAGACTAGAGGCTTGAGAAGTTTTCTGATGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000653233.1 |
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| CDS CAA 72 bp | ACTTGCTGCTGTGGTTCTTATGAGGCCAGCATTACCTaGATACCAAAGCCAAAGGAAGACACCGTACCTGTC | + |
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Preference number: 6 (lower is better) Translates to: TCCCGSYEASIT*IPKPKEDTVPV Trigger: GACAGGTACGGTGTCTTCCTTTGGCTTTGGTATCAAGGTAATGCTGGCCTCATAAGAACCACAGCAGCAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653233.1 |
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| CDS CAA 72 bp | ACTTCTCAAGCCTCTAGTCTGGCATGGAGATTAGCGTaGAGGCCTGTTGGTTCAATTAGCCTCTGTGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: TSQASSLAWRLA*RPVGSISLCAS Trigger: TGAAGCACAGAGGCTAATTGAACCAACAGGCCTCAACGCTAATCTCCATGCCAGACTAGAGGCTTGAGAAGT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653233.1 |
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| CDS CAA 72 bp | TTCTCTGCAACTCTTAACCCCTCCAGCCTTACTAATTaGTGCCTAACTGACACCCGGAACCAGACACAGCTA | + |
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Preference number: 6 (lower is better) Translates to: FSATLNPSSLTN*CLTDTRNQTQL Trigger: TAGCTGTGTCTGGTTCCGGGTGTCAGTTAGGCACAAATTAGTAAGGCTGGAGGGGTTAAGAGTTGCAGAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS TCA 72 bp | CGTGGCCAAAGAAATGAAGTTTCTGTCAGGCTACCTTaGAGAGTGGGTCAGTCGTCTGTCTTCAAGGTCAAA | + |
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Preference number: 6 (lower is better) Translates to: RGQRNEVSVRLP*RVGQSSVFKVK Trigger: TTTGACCTTGAAGACAGACGACTGACCCACTCTTCAAGGTAGCCTGACAGAAACTTCATTTCTTTGGCCACG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628324.2 |
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| CDS TCA 72 bp | GGAAGATGTCCCTCATGGATAAAGGGAGACAACTTATaGGGCCAGCATTACCTTGATACCAAAGCCAAAGGA | + |
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Preference number: 6 (lower is better) Translates to: GRCPSWIKGDNL*GQHYLDTKAKG Trigger: TCCTTTGGCTTTGGTATCAAGGTAATGCTGGCCTCATAAGTTGTCTCCCTTTATCCATGAGGGACATCTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000519703.2 |
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| CDS CCA 72 bp | AATTATTCTTCTCTGCGACAGACCCTGGCACCTGTTTaGTTTCAAGTTGGGACAAAGAGAGATTCTAGAATG | + |
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Preference number: 6 (lower is better) Translates to: NYSSLRQTLAPV*FQVGTKRDSRM Trigger: CATTCTAGAATCTCTCTTTGTCCCAACTTGAAACCAAACAGGTGCCAGGGTCTGTCGCAGAGAAGAATAATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS CAA 72 bp | GCACAAAGTGTTAGGTACACAGAATGTACGGCTGCCTaGCGTTGTGAAAATTTGCTTAGAAATTCCAAGTTG | + |
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Preference number: 6 (lower is better) Translates to: AQSVRYTECTAA*RCENLLRNSKL Trigger: CAACTTGGAATTTCTAAGCAAATTTTCACAACGCAAGGCAGCCGTACATTCTGTGTACCTAACACTTTGTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS TCA 72 bp | ATAGGTAAGAAATCTCCACCCCCAATGGCCTTGTTCTaGGAGTTCCAAATCCTGTTTCTTAACACTAATCTT | + |
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Preference number: 6 (lower is better) Translates to: IGKKSPPPMALF*EFQILFLNTNL Trigger: AAGATTAGTGTTAAGAAACAGGATTTGGAACTCTCAGAACAAGGCCATTGGGGGTGGAGATTTCTTACCTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000519703.2 |
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| CDS GCA 72 bp | CACAAAGTGTTAGGTACACAGAATGTACGGCTGCCTTaGGTTGTGAAAATTTGCTTAGAAATTCCAAGTTGT | + |
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Preference number: 6 (lower is better) Translates to: HKVLGTQNVRLP*VVKICLEIPSC Trigger: ACAACTTGGAATTTCTAAGCAAATTTTCACAACGCAAGGCAGCCGTACATTCTGTGTACCTAACACTTTGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS CAA 72 bp | TTCCAAATCCTGTTTCTTAACACTAATCTTCGGATTTaGCTTTATGGACAAAAGTATGCTGCGGTTTCAGAC | + |
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Preference number: 6 (lower is better) Translates to: FQILFLNTNLRI*LYGQKYAAVSD Trigger: GTCTGAAACCGCAGCATACTTTTGTCCATAAAGCAAAATCCGAAGATTAGTGTTAAGAAACAGGATTTGGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519703.2 |
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| CDS CAA 72 bp | TTCTTTAACCTAATGAGTCATCAAACACAATTGAACTaGAAATGTCCACCTCTTATCACTCATGTGTCCAAC | + |
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Preference number: 6 (lower is better) Translates to: FFNLMSHQTQLN*KCPPLITHVSN Trigger: GTTGGACACATGAGTGATAAGAGGTGGACATTTCAAGTTCAATTGTGTTTGATGACTCATTAGGTTAAAGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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| CDS TCA 72 bp | TTGCGTTGTGAAAATTTGCTTAGAAATTCCAAGTTGTaGGTAAATGTGAAACCTCCTCTAATTGCTCATAGT | + |
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Preference number: 6 (lower is better) Translates to: LRCENLLRNSKL*VNVKPPLIAHS Trigger: ACTATGAGCAATTAGAGGAGGTTTCACATTTACTCACAACTTGGAATTTCTAAGCAAATTTTCACAACGCAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000653233.1 ENST00000657766.1 ENST00000662643.1 |
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