Pregenerated sensors for LINC01169 (Homo sapiens)
Ensembl gene IDs: ENSG00000259471Ensembl transcript IDs: ENST00000558797.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AAGTCCTGCAAAACCTCCTCTGGTTCTGGTTCCTGCTCCCTCCCTTaGCTTCTCGGGCCTATAATCCCAGCTGCTTGGGAGACTGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: KSCKTSSGSGSCSLP*LLGPIIPAAWETEA Trigger: TGCCTCAGTCTCCCAAGCAGCTGGGATTATAGGCCCGAGAAGGCAAGGGAGGGAGCAGGAACCAGAACCAGAGGAGGTTTTGCAGGACTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558797.1 |
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| CDS CCA 90 bp | CTGACGCCTGGATATAGGCAAGTCCTGCAAAACCTCCTCTGGTTCTaGTTCCTGCTCCCTCCCTTGCCTTCTCGGGCCTATAATCCCAGC | + |
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Preference number: 5 (lower is better) Translates to: LTPGYRQVLQNLLWF*FLLPPLPSRAYNPS Trigger: GCTGGGATTATAGGCCCGAGAAGGCAAGGGAGGGAGCAGGAACCAGAACCAGAGGAGGTTTTGCAGGACTTGCCTATATCCAGGCGTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558797.1 |
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| CDS TCA 90 bp | GAGCCAGATCTGTCTGTCTGCAGCTCTGGAGGGGTTTCCATGACATaGCTTAGATGGAGAAGAGTCCAGCGGTGTAGGGAGCATGCTAGG | + |
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Preference number: 5 (lower is better) Translates to: EPDLSVCSSGGVSMT*LRWRRVQRCREHAR Trigger: CCTAGCATGCTCCCTACACCGCTGGACTCTTCTCCATCTAAGTCATGTCATGGAAACCCCTCCAGAGCTGCAGACAGACAGATCTGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558797.1 |
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| CDS TCA 90 bp | ACTCAGAGCCAGATCTGTCTGTCTGCAGCTCTGGAGGGGTTTCCATaGCATGACTTAGATGGAGAAGAGTCCAGCGGTGTAGGGAGCATG | + |
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Preference number: 5 (lower is better) Translates to: TQSQICLSAALEGFP*HDLDGEESSGVGSM Trigger: CATGCTCCCTACACCGCTGGACTCTTCTCCATCTAAGTCATGTCATGGAAACCCCTCCAGAGCTGCAGACAGACAGATCTGGCTCTGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558797.1 |
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| CDS TCA 90 bp | GTAAATCCATCATACCAGCTGCTGATGCCAAGCGACTTTCTCTGGTaGGCCAAGTGTGACCCCTGTGACAGCAGCTTCCTCTCCTATTTC | + |
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Preference number: 5 (lower is better) Translates to: VNPSYQLLMPSDFLW*AKCDPCDSSFLSYF Trigger: GAAATAGGAGAGGAAGCTGCTGTCACAGGGGTCACACTTGGCTCACCAGAGAAAGTCGCTTGGCATCAGCAGCTGGTATGATGGATTTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558797.1 |
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| CDS GCA 72 bp | GGCAAGTCCTGCAAAACCTCCTCTGGTTCTGGTTCCTaGTCCCTCCCTTGCCTTCTCGGGCCTATAATCCCA | + |
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Preference number: 6 (lower is better) Translates to: GKSCKTSSGSGS*SLPCLLGPIIP Trigger: TGGGATTATAGGCCCGAGAAGGCAAGGGAGGGAGCAGGAACCAGAACCAGAGGAGGTTTTGCAGGACTTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558797.1 |
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| CDS TCA 72 bp | TCATACCAGCTGCTGATGCCAAGCGACTTTCTCTGGTaGGCCAAGTGTGACCCCTGTGACAGCAGCTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: SYQLLMPSDFLW*AKCDPCDSSFL Trigger: GAGGAAGCTGCTGTCACAGGGGTCACACTTGGCTCACCAGAGAAAGTCGCTTGGCATCAGCAGCTGGTATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558797.1 |
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| CDS CCA 72 bp | GGATATAGGCAAGTCCTGCAAAACCTCCTCTGGTTCTaGTTCCTGCTCCCTCCCTTGCCTTCTCGGGCCTAT | + |
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Preference number: 6 (lower is better) Translates to: GYRQVLQNLLWF*FLLPPLPSRAY Trigger: ATAGGCCCGAGAAGGCAAGGGAGGGAGCAGGAACCAGAACCAGAGGAGGTTTTGCAGGACTTGCCTATATCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558797.1 |
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| CDS CCA 72 bp | ACCCCTGTGACAGCAGCTTCCTCTCCTATTTCCATCTaGCTCTCTCTGAAGACCCCAAATCATGGCCAACCT | + |
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Preference number: 6 (lower is better) Translates to: TPVTAASSPISI*LSLKTPNHGQP Trigger: AGGTTGGCCATGATTTGGGGTCTTCAGAGAGAGCCAGATGGAAATAGGAGAGGAAGCTGCTGTCACAGGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000558797.1 |
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| CDS CCA 72 bp | GGAAGCCCACAGAAGAGGGTGAAGCACAGAAGACTATaGGTGCAGTCATTTGATGATGGCCACCTTTTGGGA | + |
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Preference number: 6 (lower is better) Translates to: GSPQKRVKHRRL*VQSFDDGHLLG Trigger: TCCCAAAAGGTGGCCATCATCAAATGACTGCACCCATAGTCTTCTGTGCTTCACCCTCTTCTGTGGGCTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000558797.1 |
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| CDS CAA 72 bp | AGACTATGGGTGCAGTCATTTGATGATGGCCACCTTTaGGGACTCCATTGTGGGCAAGGCAGGCATGGTAAA | + |
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Preference number: 6 (lower is better) Translates to: RLWVQSFDDGHL*GLHCGQGRHGK Trigger: TTTACCATGCCTGCCTTGCCCACAATGGAGTCCCAAAAGGTGGCCATCATCAAATGACTGCACCCATAGTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000558797.1 |
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| CDS CCA 72 bp | CTTGCAGTAAGCCAAGATCATACCTGTACTCCAGACTaGGCAACAGAGCGAGACTGTAATCTCAGCACTTTG | + |
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Preference number: 6 (lower is better) Translates to: LAVSQDHTCTPD*ATERDCNLSTL Trigger: CAAAGTGCTGAGATTACAGTCTCGCTCTGTTGCCCAGTCTGGAGTACAGGTATGATCTTGGCTTACTGCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000558797.1 |
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| CDS CAA 90 bp | AAGCACAGAAGACTATGGGTGCAGTCATTTGATGATGGCCACCTTTaGGGACTCCATTGTGGGCAAGGCAGGCATGGTAAATCCATCATA | + |
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Preference number: 6 (lower is better) Translates to: KHRRLWVQSFDDGHL*GLHCGQGRHGKSII Trigger: TATGATGGATTTACCATGCCTGCCTTGCCCACAATGGAGTCCCAAAAGGTGGCCATCATCAAATGACTGCACCCATAGTCTTCTGTGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000558797.1 |
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