Pregenerated sensors for LINC01165 (Homo sapiens)
Ensembl gene IDs: ENSG00000229081Ensembl transcript IDs: ENST00000445190.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGGCTGTGTTCCACAAACACCACGGTGCCCTGGCCAGAAACGGGCTaGTCTCCTGACCTCCTGGGCCCCGTCCTCACTGCAGCCTCCGGG | + |
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Preference number: 5 (lower is better) Translates to: GLCSTNTTVPWPETG*SPDLLGPVLTAASG Trigger: CCCGGAGGCTGCAGTGAGGACGGGGCCCAGGAGGTCAGGAGAGCAGCCCGTTTCTGGCCAGGGCACCGTGGTGTTTGTGGAACACAGCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS CCA 90 bp | CTCTGCCTTCTCCGTCCACAGAGCACGAGTGGACAGGGCCGCATCTaGCTTTGGGGGTCCCGGAGAGCTCCCTGGTGCCCCACACCCTGG | + |
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Preference number: 5 (lower is better) Translates to: LCLLRPQSTSGQGRI*LWGSRRAPWCPTPW Trigger: CCAGGGTGTGGGGCACCAGGGAGCTCTCCGGGACCCCCAAAGCCAGATGCGGCCCTGTCCACTCGTGCTCTGTGGACGGAGAAGGCAGAG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS CCA 90 bp | CAGCTGAAGTCAGTGGGGCTGTGTTCCACAAACACCACGGTGCCCTaGCCAGAAACGGGCTGCTCTCCTGACCTCCTGGGCCCCGTCCTC | + |
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Preference number: 5 (lower is better) Translates to: QLKSVGLCSTNTTVP*PETGCSPDLLGPVL Trigger: GAGGACGGGGCCCAGGAGGTCAGGAGAGCAGCCCGTTTCTGGCCAGGGCACCGTGGTGTTTGTGGAACACAGCCCCACTGACTTCAGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS TCA 90 bp | CGGCCCCAGGAGTGGACTCGGCTCTGCAGGTACCAGTGGCGGTGCTaGCGACAGCCCCTAACTGTGCTGGTCATAAGCAGCTGGACACCA | + |
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Preference number: 5 (lower is better) Translates to: RPQEWTRLCRYQWRC*RQPLTVLVISSWTP Trigger: TGGTGTCCAGCTGCTTATGACCAGCACAGTTAGGGGCTGTCGTCAGCACCGCCACTGGTACCTGCAGAGCCGAGTCCACTCCTGGGGCCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS GCA 90 bp | GCCTCCTCTGGAGCTCGCTTTCCTGAGCACAGTGTCCTGGGACTCTaGCTTCTCCGTCCACAGAGCACGAGTGGACAGGGCCGCATCTGG | + |
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Preference number: 5 (lower is better) Translates to: ASSGARFPEHSVLGL*LLRPQSTSGQGRIW Trigger: CCAGATGCGGCCCTGTCCACTCGTGCTCTGTGGACGGAGAAGGCAGAGTCCCAGGACACTGTGCTCAGGAAAGCGAGCTCCAGAGGAGGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS CCA 90 bp | TCTCCTCAGCCTCCTCTGGAGCTCGCTTTCCTGAGCACAGTGTCCTaGGACTCTGCCTTCTCCGTCCACAGAGCACGAGTGGACAGGGCC | + |
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Preference number: 5 (lower is better) Translates to: SPQPPLELAFLSTVS*DSAFSVHRARVDRA Trigger: GGCCCTGTCCACTCGTGCTCTGTGGACGGAGAAGGCAGAGTCCCAGGACACTGTGCTCAGGAAAGCGAGCTCCAGAGGAGGCTGAGGAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS GCA 90 bp | CCAGACCTCCCTGAAAGGGGAGAGTGGAAGGTTTTCCCATGGACCTaGACAGGGCCAGGCTGTCCTGGGCACTCCCAAATCTCCTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: PDLPERGEWKVFPWT*TGPGCPGHSQISSA Trigger: GGCTGAGGAGATTTGGGAGTGCCCAGGACAGCCTGGCCCTGTGCAGGTCCATGGGAAAACCTTCCACTCTCCCCTTTCAGGGAGGTCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS TCA 90 bp | TGGGCACTCCCAAATCTCCTCAGCCTCCTCTGGAGCTCGCTTTCCTaGGCACAGTGTCCTGGGACTCTGCCTTCTCCGTCCACAGAGCAC | + |
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Preference number: 5 (lower is better) Translates to: WALPNLLSLLWSSLS*AQCPGTLPSPSTEH Trigger: GTGCTCTGTGGACGGAGAAGGCAGAGTCCCAGGACACTGTGCTCAGGAAAGCGAGCTCCAGAGGAGGCTGAGGAGATTTGGGAGTGCCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS CCA 90 bp | GGACACCAAGGAGTCTCACCAGCCCATCTGGAGAGCAGTGCCTTCTaGGGACCCAGTTTAGAGCAGGACAGACCACACTCTGCCAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: GHQGVSPAHLESSAF*GPSLEQDRPHSASW Trigger: CCAGCTGGCAGAGTGTGGTCTGTCCTGCTCTAAACTGGGTCCCCAGAAGGCACTGCTCTCCAGATGGGCTGGTGAGACTCCTTGGTGTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS GCA 90 bp | AGCAGCTGGACACCAAGGAGTCTCACCAGCCCATCTGGAGAGCAGTaGCTTCTGGGGACCCAGTTTAGAGCAGGACAGACCACACTCTGC | + |
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Preference number: 5 (lower is better) Translates to: SSWTPRSLTSPSGEQ*LLGTQFRAGQTTLC Trigger: GCAGAGTGTGGTCTGTCCTGCTCTAAACTGGGTCCCCAGAAGGCACTGCTCTCCAGATGGGCTGGTGAGACTCCTTGGTGTCCAGCTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS CCA 72 bp | CTCCGTCCACAGAGCACGAGTGGACAGGGCCGCATCTaGCTTTGGGGGTCCCGGAGAGCTCCCTGGTGCCCC | + |
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Preference number: 6 (lower is better) Translates to: LRPQSTSGQGRI*LWGSRRAPWCP Trigger: GGGGCACCAGGGAGCTCTCCGGGACCCCCAAAGCCAGATGCGGCCCTGTCCACTCGTGCTCTGTGGACGGAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS CCA 72 bp | CCTGGGACTCTGCCTTCTCCGTCCACAGAGCACGAGTaGACAGGGCCGCATCTGGCTTTGGGGGTCCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: PGTLPSPSTEHE*TGPHLALGVPE Trigger: CTCCGGGACCCCCAAAGCCAGATGCGGCCCTGTCCACTCGTGCTCTGTGGACGGAGAAGGCAGAGTCCCAGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS CCA 72 bp | TCAGTGGGGCTGTGTTCCACAAACACCACGGTGCCCTaGCCAGAAACGGGCTGCTCTCCTGACCTCCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: SVGLCSTNTTVP*PETGCSPDLLG Trigger: GCCCAGGAGGTCAGGAGAGCAGCCCGTTTCTGGCCAGGGCACCGTGGTGTTTGTGGAACACAGCCCCACTGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS GCA 72 bp | GGAGCTCGCTTTCCTGAGCACAGTGTCCTGGGACTCTaGCTTCTCCGTCCACAGAGCACGAGTGGACAGGGC | + |
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Preference number: 6 (lower is better) Translates to: GARFPEHSVLGL*LLRPQSTSGQG Trigger: GCCCTGTCCACTCGTGCTCTGTGGACGGAGAAGGCAGAGTCCCAGGACACTGTGCTCAGGAAAGCGAGCTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS CCA 72 bp | CCTCCTCTGGAGCTCGCTTTCCTGAGCACAGTGTCCTaGGACTCTGCCTTCTCCGTCCACAGAGCACGAGTG | + |
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Preference number: 6 (lower is better) Translates to: PPLELAFLSTVS*DSAFSVHRARV Trigger: CACTCGTGCTCTGTGGACGGAGAAGGCAGAGTCCCAGGACACTGTGCTCAGGAAAGCGAGCTCCAGAGGAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS GCA 72 bp | CCTGAAAGGGGAGAGTGGAAGGTTTTCCCATGGACCTaGACAGGGCCAGGCTGTCCTGGGCACTCCCAAATC | + |
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Preference number: 6 (lower is better) Translates to: PERGEWKVFPWT*TGPGCPGHSQI Trigger: GATTTGGGAGTGCCCAGGACAGCCTGGCCCTGTGCAGGTCCATGGGAAAACCTTCCACTCTCCCCTTTCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS TCA 72 bp | AGGCCACTTCCCCTCCACCCAACATGCGTGGTTTGGTaGAGGCCACAGCAGAGAAGGGTCACAACCTCTAGG | + |
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Preference number: 6 (lower is better) Translates to: RPLPLHPTCVVW*RPQQRRVTTSR Trigger: CCTAGAGGTTGTGACCCTTCTCTGCTGTGGCCTTCACCAAACCACGCATGTTGGGTGGAGGGGAAGTGGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS GCA 72 bp | ACACCAAGGAGTCTCACCAGCCCATCTGGAGAGCAGTaGCTTCTGGGGACCCAGTTTAGAGCAGGACAGACC | + |
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Preference number: 6 (lower is better) Translates to: TPRSLTSPSGEQ*LLGTQFRAGQT Trigger: GGTCTGTCCTGCTCTAAACTGGGTCCCCAGAAGGCACTGCTCTCCAGATGGGCTGGTGAGACTCCTTGGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS CAA 72 bp | ACAGAGGCCACTTCCCCTCCACCCAACATGCGTGGTTaGGTGAAGGCCACAGCAGAGAAGGGTCACAACCTC | + |
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Preference number: 6 (lower is better) Translates to: TEATSPPPNMRG*VKATAEKGHNL Trigger: GAGGTTGTGACCCTTCTCTGCTGTGGCCTTCACCAAACCACGCATGTTGGGTGGAGGGGAAGTGGCCTCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS CAA 90 bp | GGTGAAGGCCACAGCAGAGAAGGGTCACAACCTCTAGGAGTTGATTaGACCAACCATGTGGCCAAGGGCTCACTCTTCTCCCTCCTGAGT | + |
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Preference number: 6 (lower is better) Translates to: GEGHSREGSQPLGVD*TNHVAKGSLFSLLS Trigger: ACTCAGGAGGGAGAAGAGTGAGCCCTTGGCCACATGGTTGGTCAAATCAACTCCTAGAGGTTGTGACCCTTCTCTGCTGTGGCCTTCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS TCA 72 bp | AGGCCACAGCAGAGAAGGGTCACAACCTCTAGGAGTTaGTTTGACCAACCATGTGGCCAAGGGCTCACTCTT | + |
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Preference number: 6 (lower is better) Translates to: RPQQRRVTTSRS*FDQPCGQGLTL Trigger: AAGAGTGAGCCCTTGGCCACATGGTTGGTCAAATCAACTCCTAGAGGTTGTGACCCTTCTCTGCTGTGGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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| CDS CAA 72 bp | CACAGCAGAGAAGGGTCACAACCTCTAGGAGTTGATTaGACCAACCATGTGGCCAAGGGCTCACTCTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: HSREGSQPLGVD*TNHVAKGSLFS Trigger: GGAGAAGAGTGAGCCCTTGGCCACATGGTTGGTCAAATCAACTCCTAGAGGTTGTGACCCTTCTCTGCTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000445190.1 |
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