Pregenerated sensors for LINC01162 (Homo sapiens)
Ensembl gene IDs: ENSG00000232790Ensembl transcript IDs: ENST00000447262.2, ENST00000661032.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGTGATAAAGGTGTCCCTGAATCCAAATCCACATATTCTTTCCATTaGGACAGGCAGGTGGGAAGGCCTCCCTGGCAAAACTCCAACCGG | + |
|
Preference number: 5 (lower is better) Translates to: GDKGVPESKSTYSFH*DRQVGRPPWQNSNR Trigger: CCGGTTGGAGTTTTGCCAGGGAGGCCTTCCCACCTGCCTGTCTCAATGGAAAGAATATGTGGATTTGGATTCAGGGACACCTTTATCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661032.1 |
||
| CDS TCA 90 bp | CTGAGGTTCCGAGAGGTTAATGAACCGTGTTTGGTACTGGAGAGCTaGTATTGCACCCTACGTTCTCTGATGATCTTGATCTTTCTACTA | + |
|
Preference number: 5 (lower is better) Translates to: LRFREVNEPCLVLES*YCTLRSLMILIFLL Trigger: TAGTAGAAAGATCAAGATCATCAGAGAACGTAGGGTGCAATATCAGCTCTCCAGTACCAAACACGGTTCATTAACCTCTCGGAACCTCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661032.1 |
||
| CDS CCA 90 bp | CAGATCCAGAAAAAGCTGGAGCCAATCCTAGACCAGCAGGATCCATaGTATCCCTCAGGGATCATTCATTTGGTGAAATTAGACAATTCT | + |
|
Preference number: 5 (lower is better) Translates to: QIQKKLEPILDQQDP*YPSGIIHLVKLDNS Trigger: AGAATTGTCTAATTTCACCAAATGAATGATCCCTGAGGGATACCATGGATCCTGCTGGTCTAGGATTGGCTCCAGCTTTTTCTGGATCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000661032.1 |
||
| CDS GCA 90 bp | ATATTGACTCAGGGACAACATTTAAGCAGTCTTCAGCCATGGTCTTaGAGAGCCAGTGTGGTCAGATATATTAGCCAACAATGGTTAGGT | + |
|
Preference number: 5 (lower is better) Translates to: ILTQGQHLSSLQPWS*RASVVRYISQQWLG Trigger: ACCTAACCATTGTTGGCTAATATATCTGACCACACTGGCTCTGCAAGACCATGGCTGAAGACTGCTTAAATGTTGTCCCTGAGTCAATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661032.1 |
||
| CDS CCA 90 bp | GTTAAGATATTGACTCAGGGACAACATTTAAGCAGTCTTCAGCCATaGTCTTGCAGAGCCAGTGTGGTCAGATATATTAGCCAGTACCAT | + |
|
Preference number: 5 (lower is better) Translates to: VKILTQGQHLSSLQP*SCRASVVRYISQYH Trigger: ATGGTACTGGCTAATATATCTGACCACACTGGCTCTGCAAGACCATGGCTGAAGACTGCTTAAATGTTGTCCCTGAGTCAATATCTTAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447262.2 |
||
| CDS CCA 90 bp | GTTAAGATATTGACTCAGGGACAACATTTAAGCAGTCTTCAGCCATaGTCTTGCAGAGCCAGTGTGGTCAGATATATTAGCCAACAATGG | + |
|
Preference number: 5 (lower is better) Translates to: VKILTQGQHLSSLQP*SCRASVVRYISQQW Trigger: CCATTGTTGGCTAATATATCTGACCACACTGGCTCTGCAAGACCATGGCTGAAGACTGCTTAAATGTTGTCCCTGAGTCAATATCTTAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661032.1 |
||
| CDS TCA 90 bp | TTCACTTCAACAAATTGTGTCACAACTGTGTTGTATGAAAGGGCATaGTTCCCAATTTTTGATGGAAAACAACACAGTCACAAATGCCTT | + |
|
Preference number: 5 (lower is better) Translates to: FTSTNCVTTVLYERA*FPIFDGKQHSHKCL Trigger: AAGGCATTTGTGACTGTGTTGTTTTCCATCAAAAATTGGGAATCATGCCCTTTCATACAACACAGTTGTGACACAATTTGTTGAAGTGAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000447262.2 ENST00000661032.1 |
||
| CDS GCA 72 bp | ACAGCTCCAGAGCATCTCTCAGCCCCCGAGCAGGGTTaGACAGCAAATGCAGATCCAGAAAAAGCTGGAGCC | + |
|
Preference number: 6 (lower is better) Translates to: TAPEHLSAPEQG*TANADPEKAGA Trigger: GGCTCCAGCTTTTTCTGGATCTGCATTTGCTGTGCAACCCTGCTCGGGGGCTGAGAGATGCTCTGGAGCTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000661032.1 |
||
| CDS CAA 72 bp | GGCTCAGTACCATGGGTAGGAGCTAAAACCCCTGGTTaGGTGTCCTTGCCTCAGAGTCTCATGAACTTGCTT | + |
|
Preference number: 6 (lower is better) Translates to: GSVPWVGAKTPG*VSLPQSLMNLL Trigger: AAGCAAGTTCATGAGACTCTGAGGCAAGGACACCAAACCAGGGGTTTTAGCTCCTACCCATGGTACTGAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000661032.1 |
||
| CDS GCA 72 bp | CAGGGACAACATTTAAGCAGTCTTCAGCCATGGTCTTaGAGAGCCAGTGTGGTCAGATATATTAGCCAGTAC | + |
|
Preference number: 6 (lower is better) Translates to: QGQHLSSLQPWS*RASVVRYISQY Trigger: GTACTGGCTAATATATCTGACCACACTGGCTCTGCAAGACCATGGCTGAAGACTGCTTAAATGTTGTCCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447262.2 |
||
| CDS CAA 90 bp | ATCCTAGACCAGCAGGATCCATGGTATCCCTCAGGGATCATTCATTaGGTGAAATTAGACAATTCTGAATGCTTCAGGAACGCTTGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: ILDQQDPWYPSGIIH*VKLDNSECFRNACW Trigger: CCAGCAAGCGTTCCTGAAGCATTCAGAATTGTCTAATTTCACCAAATGAATGATCCCTGAGGGATACCATGGATCCTGCTGGTCTAGGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661032.1 |
||
| CDS TCA 72 bp | CGAGAGGTTAATGAACCGTGTTTGGTACTGGAGAGCTaGTATTGCACCCTACGTTCTCTGATGATCTTGATC | + |
|
Preference number: 6 (lower is better) Translates to: REVNEPCLVLES*YCTLRSLMILI Trigger: GATCAAGATCATCAGAGAACGTAGGGTGCAATATCAGCTCTCCAGTACCAAACACGGTTCATTAACCTCTCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661032.1 |
||
| CDS GCA 72 bp | CAGGGACAACATTTAAGCAGTCTTCAGCCATGGTCTTaGAGAGCCAGTGTGGTCAGATATATTAGCCAACAA | + |
|
Preference number: 6 (lower is better) Translates to: QGQHLSSLQPWS*RASVVRYISQQ Trigger: TTGTTGGCTAATATATCTGACCACACTGGCTCTGCAAGACCATGGCTGAAGACTGCTTAAATGTTGTCCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661032.1 |
||
| CDS CCA 72 bp | TTGACTCAGGGACAACATTTAAGCAGTCTTCAGCCATaGTCTTGCAGAGCCAGTGTGGTCAGATATATTAGC | + |
|
Preference number: 6 (lower is better) Translates to: LTQGQHLSSLQP*SCRASVVRYIS Trigger: GCTAATATATCTGACCACACTGGCTCTGCAAGACCATGGCTGAAGACTGCTTAAATGTTGTCCCTGAGTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447262.2 ENST00000661032.1 |
||
| CDS CCA 72 bp | AAAAAGCTGGAGCCAATCCTAGACCAGCAGGATCCATaGTATCCCTCAGGGATCATTCATTTGGTGAAATTA | + |
|
Preference number: 6 (lower is better) Translates to: KKLEPILDQQDP*YPSGIIHLVKL Trigger: TAATTTCACCAAATGAATGATCCCTGAGGGATACCATGGATCCTGCTGGTCTAGGATTGGCTCCAGCTTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000661032.1 |
||
| CDS CAA 72 bp | CCCAGAAGAAAAGATGGACCCAAAGTCAACACTAGATaGATGGTAAGAGGTGAGTCTCCATCTCAGGTATTC | + |
|
Preference number: 6 (lower is better) Translates to: PRRKDGPKVNTR*MVRGESPSQVF Trigger: GAATACCTGAGATGGAGACTCACCTCTTACCATCAATCTAGTGTTGACTTTGGGTCCATCTTTTCTTCTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000661032.1 |
||
| CDS CAA 72 bp | CAGCAGGATCCATGGTATCCCTCAGGGATCATTCATTaGGTGAAATTAGACAATTCTGAATGCTTCAGGAAC | + |
|
Preference number: 6 (lower is better) Translates to: QQDPWYPSGIIH*VKLDNSECFRN Trigger: GTTCCTGAAGCATTCAGAATTGTCTAATTTCACCAAATGAATGATCCCTGAGGGATACCATGGATCCTGCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000661032.1 |
||
| CDS CAA 90 bp | AACACTAGATTGATGGTAAGAGGTGAGTCTCCATCTCAGGTATTCTaGTTTCTGTTCCAGTGTTCTTTCACTTCAACAAATTGTGTCACA | + |
|
Preference number: 6 (lower is better) Translates to: NTRLMVRGESPSQVF*FLFQCSFTSTNCVT Trigger: TGTGACACAATTTGTTGAAGTGAAAGAACACTGGAACAGAAACAAGAATACCTGAGATGGAGACTCACCTCTTACCATCAATCTAGTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447262.2 ENST00000661032.1 |
||
| CDS CAA 72 bp | TTGATGGTAAGAGGTGAGTCTCCATCTCAGGTATTCTaGTTTCTGTTCCAGTGTTCTTTCACTTCAACAAAT | + |
|
Preference number: 6 (lower is better) Translates to: LMVRGESPSQVF*FLFQCSFTSTN Trigger: ATTTGTTGAAGTGAAAGAACACTGGAACAGAAACAAGAATACCTGAGATGGAGACTCACCTCTTACCATCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447262.2 ENST00000661032.1 |
||