Pregenerated sensors for LINC01160 (Homo sapiens)
Ensembl gene IDs: ENSG00000231346Ensembl transcript IDs: ENST00000441004.5, ENST00000450155.5, ENST00000453988.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TTCCAAGATGATTGTAAGCTTCCTGAGGCCCTCACCAGAAGCAGATaGCGGCACCATGCTTTGTGTATAGCCTGTGGTCCCTTTCTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: FQDDCKLPEALTRSR*RHHALCIACGPFLL Trigger: AAGAAGAAAGGGACCACAGGCTATACACAAAGCATGGTGCCGGCATCTGCTTCTGGTGAGGGCCTCAGGAAGCTTACAATCATCTTGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000441004.5 ENST00000450155.5 |
||
| CDS CCA 90 bp | CCTCACCAGAAGCAGATGCCGGCACCATGCTTTGTGTATAGCCTGTaGTCCCTTTCTTCTTGTAGGTTATGTTCAGGATCAAGTCAGTCT | + |
|
Preference number: 5 (lower is better) Translates to: PHQKQMPAPCFVYSL*SLSSCRLCSGSSQS Trigger: AGACTGACTTGATCCTGAACATAACCTACAAGAAGAAAGGGACCACAGGCTATACACAAAGCATGGTGCCGGCATCTGCTTCTGGTGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000441004.5 ENST00000450155.5 |
||
| CDS GCA 90 bp | TGTTCAGGATCAAGTCAGTCTTCATTTGAAATCGGCACTGCTCAATaGTTCCCCTCACTGCCATGCTTTGATCCAAATTCTTCTTGTGAG | + |
|
Preference number: 5 (lower is better) Translates to: CSGSSQSSFEIGTAQ*FPSLPCFDPNSSCE Trigger: CTCACAAGAAGAATTTGGATCAAAGCATGGCAGTGAGGGGAAGCATTGAGCAGTGCCGATTTCAAATGAAGACTGACTTGATCCTGAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450155.5 |
||
| CDS CCA 72 bp | GCAGCCAGGCAGAGGGGCTCCTCACGTCCCAGGCGATaGGCGGCCAGGCAGAGACGCTCCTCACTTCCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: AARQRGSSRPRR*AARQRRSSLPR Trigger: TCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGCCTGGGACGTGAGGAGCCCCTCTGCCTGGCTGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000453988.1 |
||
| CDS TCA 72 bp | CACTGCACTCCAGCCTGGGCACCATTGAGCACTGAGTaGACCAGACTCCGTCTGCAATCCCCGCACCCCGGG | + |
|
Preference number: 6 (lower is better) Translates to: HCTPAWAPLSTE*TRLRLQSPHPG Trigger: CCCGGGGTGCGGGGATTGCAGACGGAGTCTGGTTCACTCAGTGCTCAATGGTGCCCAGGCTGGAGTGCAGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000453988.1 |
||
| CDS CCA 72 bp | ATGGCGACCGGGAAGAGGCGCTCGTCACTTCCTAGATaGGATGGCGGCCGGGCAGAGACGCTCCTCACTTTC | + |
|
Preference number: 6 (lower is better) Translates to: MATGKRRSSLPR*DGGRAETLLTF Trigger: GAAAGTGAGGAGCGTCTCTGCCCGGCCGCCATCCCATCTAGGAAGTGACGAGCGCCTCTTCCCGGTCGCCAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000453988.1 |
||
| CDS GCA 72 bp | CAATCTATTGACAGCCACCTTTTCAGACGGGGCGGCTaGGAGGCGGAGGGTCTCCTCACTTCTCAGACGGGG | + |
|
Preference number: 6 (lower is better) Translates to: QSIDSHLFRRGG*EAEGLLTSQTG Trigger: CCCCGTCTGAGAAGTGAGGAGACCCTCCGCCTCGCAGCCGCCCCGTCTGAAAAGGTGGCTGTCAATAGATTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000441004.5 ENST00000450155.5 |
||
| CDS GCA 72 bp | GATTGTAAGCTTCCTGAGGCCCTCACCAGAAGCAGATaGCGGCACCATGCTTTGTGTATAGCCTGTGGTCCC | + |
|
Preference number: 6 (lower is better) Translates to: DCKLPEALTRSR*RHHALCIACGP Trigger: GGGACCACAGGCTATACACAAAGCATGGTGCCGGCATCTGCTTCTGGTGAGGGCCTCAGGAAGCTTACAATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000441004.5 ENST00000450155.5 |
||
| CDS CAA 72 bp | GAGGCCCTCACCAGAAGCAGATGCCGGCACCATGCTTaGTGTATAGCCTGTGGTCCCTTTCTTCTTGTAGGT | + |
|
Preference number: 6 (lower is better) Translates to: EALTRSRCRHHA*CIACGPFLLVG Trigger: ACCTACAAGAAGAAAGGGACCACAGGCTATACACAAAGCATGGTGCCGGCATCTGCTTCTGGTGAGGGCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000441004.5 ENST00000450155.5 |
||
| CDS CAA 90 bp | AAGCTTCCTGAGGCCCTCACCAGAAGCAGATGCCGGCACCATGCTTaGTGTATAGCCTGTGGTCCCTTTCTTCTTGTAGGTTATGTTCAG | + |
|
Preference number: 6 (lower is better) Translates to: KLPEALTRSRCRHHA*CIACGPFLLVGYVQ Trigger: CTGAACATAACCTACAAGAAGAAAGGGACCACAGGCTATACACAAAGCATGGTGCCGGCATCTGCTTCTGGTGAGGGCCTCAGGAAGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000441004.5 ENST00000450155.5 |
||
| CDS GCA 72 bp | GAAATCGGCACTGCTCAATGCTTCCCCTCACTGCCATaGTTTGATCCAAATTCTTCTTGTGAGGGGACTCCC | + |
|
Preference number: 6 (lower is better) Translates to: EIGTAQCFPSLP*FDPNSSCEGTP Trigger: GGGAGTCCCCTCACAAGAAGAATTTGGATCAAAGCATGGCAGTGAGGGGAAGCATTGAGCAGTGCCGATTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450155.5 |
||
| CDS CAA 90 bp | TTTTTAAAGTGTGCGGCACTGTCCCCTTCTCTCTTGCTCCCTCTCTaGCCATGTGATGCGCTGGCTTCCTCTTCACCTTCCAAGATGATT | + |
|
Preference number: 6 (lower is better) Translates to: FLKCAALSPSLLLPL*PCDALASSSPSKMI Trigger: AATCATCTTGGAAGGTGAAGAGGAAGCCAGCGCATCACATGGCAAGAGAGGGAGCAAGAGAGAAGGGGACAGTGCCGCACACTTTAAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000441004.5 ENST00000450155.5 |
||
| CDS GCA 72 bp | CATTTGAAATCGGCACTGCTCAATGCTTCCCCTCACTaGCATGCTTTGATCCAAATTCTTCTTGTGAGGGGA | + |
|
Preference number: 6 (lower is better) Translates to: HLKSALLNASPH*HALIQILLVRG Trigger: TCCCCTCACAAGAAGAATTTGGATCAAAGCATGGCAGTGAGGGGAAGCATTGAGCAGTGCCGATTTCAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450155.5 |
||
| CDS CCA 72 bp | AAGCAGATGCCGGCACCATGCTTTGTGTATAGCCTGTaGTCCCTTTCTTCTTGTAGGTTATGTTCAGGATCA | + |
|
Preference number: 6 (lower is better) Translates to: KQMPAPCFVYSL*SLSSCRLCSGS Trigger: TGATCCTGAACATAACCTACAAGAAGAAAGGGACCACAGGCTATACACAAAGCATGGTGCCGGCATCTGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000441004.5 ENST00000450155.5 |
||