Pregenerated sensors for LINC01150 (Homo sapiens)
Ensembl gene IDs: ENSG00000229671Ensembl transcript IDs: ENST00000455671.2, ENST00000660469.1, ENST00000671969.1, ENST00000672893.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AACACGGATCCTCATTCCACAATACCTATCCCGCAATGTTGTGTATaGACGGGAACCTGGGGGTGGCACGGTCGAGGGAGTCTGGCGGGG | + |
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Preference number: 5 (lower is better) Translates to: NTDPHSTIPIPQCCV*TGTWGWHGRGSLAG Trigger: CCCCGCCAGACTCCCTCGACCGTGCCACCCCCAGGTTCCCGTGCATACACAACATTGCGGGATAGGTATTGTGGAATGAGGATCCGTGTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000455671.2 ENST00000660469.1 ENST00000671969.1 ENST00000672893.1 |
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| CDS CCA 90 bp | CATTCCACAATACCTATCCCGCAATGTTGTGTATGCACGGGAACCTaGGGGTGGCACGGTCGAGGGAGTCTGGCGGGGATATTTCATAAA | + |
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Preference number: 5 (lower is better) Translates to: HSTIPIPQCCVCTGT*GWHGRGSLAGIFHK Trigger: TTTATGAAATATCCCCGCCAGACTCCCTCGACCGTGCCACCCCCAGGTTCCCGTGCATACACAACATTGCGGGATAGGTATTGTGGAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000455671.2 ENST00000660469.1 ENST00000671969.1 ENST00000672893.1 |
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| CDS CCA 72 bp | ATACCTATCCCGCAATGTTGTGTATGCACGGGAACCTaGGGGTGGCACGGTCGAGGGAGTCTGGCGGGGATA | + |
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Preference number: 6 (lower is better) Translates to: IPIPQCCVCTGT*GWHGRGSLAGI Trigger: TATCCCCGCCAGACTCCCTCGACCGTGCCACCCCCAGGTTCCCGTGCATACACAACATTGCGGGATAGGTAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000455671.2 ENST00000660469.1 ENST00000671969.1 ENST00000672893.1 |
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| CDS CCA 72 bp | GCCGGCCATTCCAACCGTGTTCAGATAAGGCAAGCATaGAGCTGCAGCCCCTCTGGCGGTTTCTGTGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: AGHSNRVQIRQA*SCSPSGGFCAL Trigger: CAAAGCACAGAAACCGCCAGAGGGGCTGCAGCTCCATGCTTGCCTTATCTGAACACGGTTGGAATGGCCGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000455671.2 ENST00000660469.1 ENST00000671969.1 ENST00000672893.1 |
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| CDS CCA 72 bp | ATCCCGCAATGTTGTGTATGCACGGGAACCTGGGGGTaGCACGGTCGAGGGAGTCTGGCGGGGATATTTCAT | + |
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Preference number: 6 (lower is better) Translates to: IPQCCVCTGTWG*HGRGSLAGIFH Trigger: ATGAAATATCCCCGCCAGACTCCCTCGACCGTGCCACCCCCAGGTTCCCGTGCATACACAACATTGCGGGAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000455671.2 ENST00000660469.1 ENST00000671969.1 ENST00000672893.1 |
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| CDS GCA 72 bp | CCTCATTCCACAATACCTATCCCGCAATGTTGTGTATaGACGGGAACCTGGGGGTGGCACGGTCGAGGGAGT | + |
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Preference number: 6 (lower is better) Translates to: PHSTIPIPQCCV*TGTWGWHGRGS Trigger: ACTCCCTCGACCGTGCCACCCCCAGGTTCCCGTGCATACACAACATTGCGGGATAGGTATTGTGGAATGAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000455671.2 ENST00000660469.1 ENST00000671969.1 ENST00000672893.1 |
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| CDS GCA 72 bp | GCAAGCATGGAGCTGCAGCCCCTCTGGCGGTTTCTGTaGTTTGCTTCCGTTTTCTGTGCCTCCTTTCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: ASMELQPLWRFL*FASVFCASFPF Trigger: AAAGGGAAAGGAGGCACAGAAAACGGAAGCAAAGCACAGAAACCGCCAGAGGGGCTGCAGCTCCATGCTTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000455671.2 ENST00000671969.1 |
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| CDS GCA 72 bp | CATTCCAACCGTGTTCAGATAAGGCAAGCATGGAGCTaGAGCCCCTCTGGCGGTTTCTGTGCTTTGCTTCCG | + |
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Preference number: 6 (lower is better) Translates to: HSNRVQIRQAWS*SPSGGFCALLP Trigger: CGGAAGCAAAGCACAGAAACCGCCAGAGGGGCTGCAGCTCCATGCTTGCCTTATCTGAACACGGTTGGAATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000455671.2 ENST00000671969.1 |
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| CDS TCA 72 bp | TCTTTGGCCCTGGCCCTGTTAACTCTCACAGCAGGCTaGGGAGGTAGATGCTCTTATCCTTGGAGTCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: SLALALLTLTAG*GGRCSYPWSLP Trigger: GGGAAGACTCCAAGGATAAGAGCATCTACCTCCTCAGCCTGCTGTGAGAGTTAACAGGGCCAGGGCCAAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000455671.2 ENST00000660469.1 ENST00000671969.1 ENST00000672893.1 |
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| CDS CCA 72 bp | TGTTCAGATAAGGCAAGCATGGAGCTGCAGCCCCTCTaGCGGTTTCTGTGCTTTGCTTCCGTTTTCTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: CSDKASMELQPL*RFLCFASVFCA Trigger: GGCACAGAAAACGGAAGCAAAGCACAGAAACCGCCAGAGGGGCTGCAGCTCCATGCTTGCCTTATCTGAACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000455671.2 ENST00000671969.1 |
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| CDS CAA 90 bp | TATCCTTGGAGTCTTCCCAGAGAGCAAACTGAAGCTCAGAGGGGGTaGAACAAAATCCTGAAGGTCACACAGCTACGAGGCAGTGCAGTC | + |
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Preference number: 6 (lower is better) Translates to: YPWSLPREQTEAQRG*NKILKVTQLRGSAV Trigger: GACTGCACTGCCTCGTAGCTGTGTGACCTTCAGGATTTTGTTCAACCCCCTCTGAGCTTCAGTTTGCTCTCTGGGAAGACTCCAAGGATA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000455671.2 ENST00000660469.1 ENST00000671969.1 ENST00000672893.1 |
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| CDS CAA 72 bp | AGTCTTCCCAGAGAGCAAACTGAAGCTCAGAGGGGGTaGAACAAAATCCTGAAGGTCACACAGCTACGAGGC | + |
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Preference number: 6 (lower is better) Translates to: SLPREQTEAQRG*NKILKVTQLRG Trigger: GCCTCGTAGCTGTGTGACCTTCAGGATTTTGTTCAACCCCCTCTGAGCTTCAGTTTGCTCTCTGGGAAGACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000455671.2 ENST00000660469.1 ENST00000671969.1 ENST00000672893.1 |
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| CDS TCA 72 bp | ATGCTCTTATCCTTGGAGTCTTCCCAGAGAGCAAACTaGAGCTCAGAGGGGGTTGAACAAAATCCTGAAGGT | + |
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Preference number: 6 (lower is better) Translates to: MLLSLESSQRAN*SSEGVEQNPEG Trigger: ACCTTCAGGATTTTGTTCAACCCCCTCTGAGCTTCAGTTTGCTCTCTGGGAAGACTCCAAGGATAAGAGCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000455671.2 ENST00000660469.1 ENST00000671969.1 ENST00000672893.1 |
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| CDS CAA 72 bp | ACATGGTCAGGCATTCTAAGTCACCTGAATTCTTTCTaGCACAGGATCCAAATCCAAGAACCCTCTCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: TWSGILSHLNSF*HRIQIQEPSLG Trigger: CCCAAGAGAGGGTTCTTGGATTTGGATCCTGTGCAAGAAAGAATTCAGGTGACTTAGAATGCCTGACCATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000455671.2 ENST00000660469.1 ENST00000671969.1 ENST00000672893.1 |
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