Pregenerated sensors for LINC01149 (Homo sapiens)
Ensembl gene IDs: ENSG00000234858Ensembl transcript IDs: ENST00000413634.1, ENST00000414257.1, ENST00000430364.1, ENST00000449972.1
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 72 bp | GGTTTTCCTTCATCTCCGCTGACATCAGGACATTCCTaGGCATCACAAAGGTCAGTTCCAGTGTTTGGTATG | + |
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Preference number: 6 (lower is better) Translates to: GFPSSPLTSGHS*ASQRSVPVFGM Trigger: CATACCAAACACTGGAACTGACCTTTGTGATGCTCAGGAATGTCCTGATGTCAGCGGAGATGAAGGAAAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000413634.1 ENST00000414257.1 ENST00000430364.1 ENST00000449972.1 |
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| CDS GCA 72 bp | GTGTTAGAATTGGCTGCAATGTTCCATACGGTAACATaGTATATAATTTGTAGCCTAGAAGCAATGGGCTTA | + |
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Preference number: 6 (lower is better) Translates to: VLELAAMFHTVT*YIICSLEAMGL Trigger: TAAGCCCATTGCTTCTAGGCTACAAATTATATAGCATGTTACCGTATGGAACATTGCAGCCAATTCTAACAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000413634.1 ENST00000414257.1 ENST00000430364.1 ENST00000449972.1 |
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| CDS CCA 72 bp | ACATTCCTGAGCATCACAAAGGTCAGTTCCAGTGTTTaGTATGATTCCTTCTTCTCTTATGATCCATTTCAT | + |
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Preference number: 6 (lower is better) Translates to: TFLSITKVSSSV*YDSFFSYDPFH Trigger: ATGAAATGGATCATAAGAGAAGAAGGAATCATACCAAACACTGGAACTGACCTTTGTGATGCTCAGGAATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000413634.1 ENST00000414257.1 ENST00000430364.1 ENST00000449972.1 |
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| CDS CAA 90 bp | GTTTACACATGCTTAGATCCACAAATACTTACCATTGTGTTAGAATaGGCTGCAATGTTCCATACGGTAACATGCTATATAATTTGTAGC | + |
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Preference number: 6 (lower is better) Translates to: VYTCLDPQILTIVLE*AAMFHTVTCYIICS Trigger: GCTACAAATTATATAGCATGTTACCGTATGGAACATTGCAGCCAATTCTAACACAATGGTAAGTATTTGTGGATCTAAGCATGTGTAAAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000413634.1 ENST00000414257.1 ENST00000430364.1 ENST00000449972.1 |
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| CDS CAA 72 bp | TGCTTAGATCCACAAATACTTACCATTGTGTTAGAATaGGCTGCAATGTTCCATACGGTAACATGCTATATA | + |
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Preference number: 6 (lower is better) Translates to: CLDPQILTIVLE*AAMFHTVTCYI Trigger: TATATAGCATGTTACCGTATGGAACATTGCAGCCAATTCTAACACAATGGTAAGTATTTGTGGATCTAAGCA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000413634.1 ENST00000414257.1 ENST00000430364.1 ENST00000449972.1 |
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| CDS GCA 72 bp | AGATCCACAAATACTTACCATTGTGTTAGAATTGGCTaGAATGTTCCATACGGTAACATGCTATATAATTTG | + |
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Preference number: 6 (lower is better) Translates to: RSTNTYHCVRIG*NVPYGNMLYNL Trigger: CAAATTATATAGCATGTTACCGTATGGAACATTGCAGCCAATTCTAACACAATGGTAAGTATTTGTGGATCT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000413634.1 ENST00000414257.1 ENST00000430364.1 ENST00000449972.1 |
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