Pregenerated sensors for LINC01148 (Homo sapiens)
Ensembl gene IDs: ENSG00000258804Ensembl transcript IDs: ENST00000557527.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGCCCCTTCCTGGGATGGCCGAGACCGGAGCCGGCTCCCTCAGCCTaGAGGGAGGTGTGGAGGGAGAGGCACGGGCGGGAACCGGGGCTG | + |
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Preference number: 5 (lower is better) Translates to: SPFLGWPRPEPAPSA*REVWRERHGREPGL Trigger: CAGCCCCGGTTCCCGCCCGTGCCTCTCCCTCCACACCTCCCTGCAGGCTGAGGGAGCCGGCTCCGGTCTCGGCCATCCCAGGAAGGGGCT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS GCA 90 bp | TGGCGCCCACTCTGGCCACGCTTGAGGAGCCCTTCAGCCCGCCGCTaGACTGTGGGAGCCCCTTCCTGGGATGGCCGAGACCGGAGCCGG | + |
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Preference number: 5 (lower is better) Translates to: WRPLWPRLRSPSARR*TVGAPSWDGRDRSR Trigger: CCGGCTCCGGTCTCGGCCATCCCAGGAAGGGGCTCCCACAGTGCAGCGGCGGGCTGAAGGGCTCCTCAAGCGTGGCCAGAGTGGGCGCCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS CCA 90 bp | GAGCCCTTCAGCCCGCCGCTGCACTGTGGGAGCCCCTTCCTGGGATaGCCGAGACCGGAGCCGGCTCCCTCAGCCTGCAGGGAGGTGTGG | + |
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Preference number: 5 (lower is better) Translates to: EPFSPPLHCGSPFLG*PRPEPAPSACREVW Trigger: CCACACCTCCCTGCAGGCTGAGGGAGCCGGCTCCGGTCTCGGCCATCCCAGGAAGGGGCTCCCACAGTGCAGCGGCGGGCTGAAGGGCTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS TCA 90 bp | CCCTCTTGGCGCCTCCTCGGCCTTGGCGCCCACTCTGGCCACGCTTaGGGAGCCCTTCAGCCCGCCGCTGCACTGTGGGAGCCCCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: PSWRLLGLGAHSGHA*GALQPAAALWEPLP Trigger: AGGAAGGGGCTCCCACAGTGCAGCGGCGGGCTGAAGGGCTCCTCAAGCGTGGCCAGAGTGGGCGCCAAGGCCGAGGAGGCGCCAAGAGGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS CCA 90 bp | TTGAGGAGCCCTTCAGCCCGCCGCTGCACTGTGGGAGCCCCTTCCTaGGATGGCCGAGACCGGAGCCGGCTCCCTCAGCCTGCAGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: LRSPSARRCTVGAPS*DGRDRSRLPQPAGR Trigger: CCTCCCTGCAGGCTGAGGGAGCCGGCTCCGGTCTCGGCCATCCCAGGAAGGGGCTCCCACAGTGCAGCGGCGGGCTGAAGGGCTCCTCAA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS CCA 90 bp | AGCCCTCGCTCCCTCTTGGCGCCTCCTCGGCCTTGGCGCCCACTCTaGCCACGCTTGAGGAGCCCTTCAGCCCGCCGCTGCACTGTGGGA | + |
|
Preference number: 5 (lower is better) Translates to: SPRSLLAPPRPWRPL*PRLRSPSARRCTVG Trigger: TCCCACAGTGCAGCGGCGGGCTGAAGGGCTCCTCAAGCGTGGCCAGAGTGGGCGCCAAGGCCGAGGAGGCGCCAAGAGGGAGCGAGGGCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS GCA 90 bp | CAGGCCAAAGGCATCATTCACCTAAGTAGAGACGAGGTGACAGCGTaGTGTCAGTCCTCACAGCCCTCGCTCCCTCTTGGCGCCTCCTCG | + |
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Preference number: 5 (lower is better) Translates to: QAKGIIHLSRDEVTA*CQSSQPSLPLGASS Trigger: CGAGGAGGCGCCAAGAGGGAGCGAGGGCTGTGAGGACTGACAGCACGCTGTCACCTCGTCTCTACTTAGGTGAATGATGCCTTTGGCCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS CCA 90 bp | TGCTGGTGGAAACGTAAAATGGTACAAATACTCTGGAGAACAGTTTaGCAGTTTCTTGAAAAACTTTCAGATGCTGCTGCCTTGATGAAA | + |
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Preference number: 5 (lower is better) Translates to: CWWKRKMVQILWRTV*QFLEKLSDAAALMK Trigger: TTTCATCAAGGCAGCAGCATCTGAAAGTTTTTCAAGAAACTGCCAAACTGTTCTCCAGAGTATTTGTACCATTTTACGTTTCCACCAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS CCA 90 bp | CCACTTGTATATTGCTGGTGGAAACGTAAAATGGTACAAATACTCTaGAGAACAGTTTGGCAGTTTCTTGAAAAACTTTCAGATGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: PLVYCWWKRKMVQIL*RTVWQFLEKLSDAA Trigger: AGCAGCATCTGAAAGTTTTTCAAGAAACTGCCAAACTGTTCTCCAGAGTATTTGTACCATTTTACGTTTCCACCAGCAATATACAAGTGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS GCA 90 bp | TCTTGTACATATTCCCTTCTATTTTCCATAAAGAGTGAGAGTTTCTaGAACTGTATTCATTGTGGCTATGGAAGACATAAGCAGGCCAAA | + |
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Preference number: 5 (lower is better) Translates to: SCTYSLLFSIKSESF*NCIHCGYGRHKQAK Trigger: TTTGGCCTGCTTATGTCTTCCATAGCCACAATGAATACAGTTGCAGAAACTCTCACTCTTTATGGAAAATAGAAGGGAATATGTACAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS CCA 72 bp | AGACCGGAGCCGGCTCCCTCAGCCTGCAGGGAGGTGTaGAGGGAGAGGCACGGGCGGGAACCGGGGCTGCGT | + |
|
Preference number: 6 (lower is better) Translates to: RPEPAPSACREV*RERHGREPGLR Trigger: ACGCAGCCCCGGTTCCCGCCCGTGCCTCTCCCTCCACACCTCCCTGCAGGCTGAGGGAGCCGGCTCCGGTCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS CCA 72 bp | AGCCCGCCGCTGCACTGTGGGAGCCCCTTCCTGGGATaGCCGAGACCGGAGCCGGCTCCCTCAGCCTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: SPPLHCGSPFLG*PRPEPAPSACR Trigger: CCTGCAGGCTGAGGGAGCCGGCTCCGGTCTCGGCCATCCCAGGAAGGGGCTCCCACAGTGCAGCGGCGGGCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS CCA 72 bp | CCTTCAGCCCGCCGCTGCACTGTGGGAGCCCCTTCCTaGGATGGCCGAGACCGGAGCCGGCTCCCTCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: PSARRCTVGAPS*DGRDRSRLPQP Trigger: AGGCTGAGGGAGCCGGCTCCGGTCTCGGCCATCCCAGGAAGGGGCTCCCACAGTGCAGCGGCGGGCTGAAGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS CCA 72 bp | TCCCTCTTGGCGCCTCCTCGGCCTTGGCGCCCACTCTaGCCACGCTTGAGGAGCCCTTCAGCCCGCCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SLLAPPRPWRPL*PRLRSPSARRC Trigger: GCAGCGGCGGGCTGAAGGGCTCCTCAAGCGTGGCCAGAGTGGGCGCCAAGGCCGAGGAGGCGCCAAGAGGGA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS CAA 72 bp | GCGCCTCCTCGGCCTTGGCGCCCACTCTGGCCACGCTaGAGGAGCCCTTCAGCCCGCCGCTGCACTGTGGGA | + |
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Preference number: 6 (lower is better) Translates to: APPRPWRPLWPR*RSPSARRCTVG Trigger: TCCCACAGTGCAGCGGCGGGCTGAAGGGCTCCTCAAGCGTGGCCAGAGTGGGCGCCAAGGCCGAGGAGGCGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS CAA 90 bp | TCCCTCTTGGCGCCTCCTCGGCCTTGGCGCCCACTCTGGCCACGCTaGAGGAGCCCTTCAGCCCGCCGCTGCACTGTGGGAGCCCCTTCC | + |
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Preference number: 6 (lower is better) Translates to: SLLAPPRPWRPLWPR*RSPSARRCTVGAPS Trigger: GGAAGGGGCTCCCACAGTGCAGCGGCGGGCTGAAGGGCTCCTCAAGCGTGGCCAGAGTGGGCGCCAAGGCCGAGGAGGCGCCAAGAGGGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS CAA 90 bp | TGTCAGTCCTCACAGCCCTCGCTCCCTCTTGGCGCCTCCTCGGCCTaGGCGCCCACTCTGGCCACGCTTGAGGAGCCCTTCAGCCCGCCG | + |
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Preference number: 6 (lower is better) Translates to: CQSSQPSLPLGASSA*APTLATLEEPFSPP Trigger: CGGCGGGCTGAAGGGCTCCTCAAGCGTGGCCAGAGTGGGCGCCAAGGCCGAGGAGGCGCCAAGAGGGAGCGAGGGCTGTGAGGACTGACA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS CAA 72 bp | TCACAGCCCTCGCTCCCTCTTGGCGCCTCCTCGGCCTaGGCGCCCACTCTGGCCACGCTTGAGGAGCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: SQPSLPLGASSA*APTLATLEEPF Trigger: GAAGGGCTCCTCAAGCGTGGCCAGAGTGGGCGCCAAGGCCGAGGAGGCGCCAAGAGGGAGCGAGGGCTGTGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS GCA 72 bp | GGCATCATTCACCTAAGTAGAGACGAGGTGACAGCGTaGTGTCAGTCCTCACAGCCCTCGCTCCCTCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: GIIHLSRDEVTA*CQSSQPSLPLG Trigger: GCCAAGAGGGAGCGAGGGCTGTGAGGACTGACAGCACGCTGTCACCTCGTCTCTACTTAGGTGAATGATGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS CCA 72 bp | GAGATCCACTTGTATATTGCTGGTGGAAACGTAAAATaGTACAAATACTCTGGAGAACAGTTTGGCAGTTTC | + |
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Preference number: 6 (lower is better) Translates to: EIHLYIAGGNVK*YKYSGEQFGSF Trigger: GAAACTGCCAAACTGTTCTCCAGAGTATTTGTACCATTTTACGTTTCCACCAGCAATATACAAGTGGATCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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| CDS CCA 72 bp | AAACGTAAAATGGTACAAATACTCTGGAGAACAGTTTaGCAGTTTCTTGAAAAACTTTCAGATGCTGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: KRKMVQILWRTV*QFLEKLSDAAA Trigger: GGCAGCAGCATCTGAAAGTTTTTCAAGAAACTGCCAAACTGTTCTCCAGAGTATTTGTACCATTTTACGTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000557527.1 |
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