Pregenerated sensors for LINC01147 (Homo sapiens)
Ensembl gene IDs: ENSG00000258826Ensembl transcript IDs: ENST00000553921.1, ENST00000557631.6
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATACCAATCACGACGATGTTACTCCACATATTCTCCTTCCCTGCCTaGCTTCTGAGGGCATTTGGGCTTAGCATCTCTGGGTGTCAGGAT | + |
|
Preference number: 5 (lower is better) Translates to: IPITTMLLHIFSFPA*LLRAFGLSISGCQD Trigger: ATCCTGACACCCAGAGATGCTAAGCCCAAATGCCCTCAGAAGTCAGGCAGGGAAGGAGAATATGTGGAGTAACATCGTCGTGATTGGTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553921.1 |
||
| CDS GCA 90 bp | GTCGAGATGCGGAAGGAGTTTGCTCCTGTAATTTCAGGAGGTCTTTaGATATACCAATCACGACGATGTTACTCCACATATTCTCCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: VEMRKEFAPVISGGL*IYQSRRCYSTYSPS Trigger: GGAAGGAGAATATGTGGAGTAACATCGTCGTGATTGGTATATGCAAAGACCTCCTGAAATTACAGGAGCAAACTCCTTCCGCATCTCGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553921.1 |
||
| CDS CCA 90 bp | AAGATGCTTGCTCTAATAAAAGCAGCACGACAACTTTCCAACAACTaGAAGGAAGGTATCATAAGGAAGACACATCTTACTTTTACAGAA | + |
|
Preference number: 5 (lower is better) Translates to: KMLALIKAARQLSNN*KEGIIRKTHLTFTE Trigger: TTCTGTAAAAGTAAGATGTGTCTTCCTTATGATACCTTCCTTCCAGTTGTTGGAAAGTTGTCGTGCTGCTTTTATTAGAGCAAGCATCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000557631.6 |
||
| CDS TCA 72 bp | ACGACGATGTTACTCCACATATTCTCCTTCCCTGCCTaGCTTCTGAGGGCATTTGGGCTTAGCATCTCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: TTMLLHIFSFPA*LLRAFGLSISG Trigger: CCCAGAGATGCTAAGCCCAAATGCCCTCAGAAGTCAGGCAGGGAAGGAGAATATGTGGAGTAACATCGTCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553921.1 |
||
| CDS CAA 90 bp | GGTCGAGATGCGGAAGGAGTTTGCTCCTGTAATTTCAGGAGGTCTTaGCATATACCAATCACGACGATGTTACTCCACATATTCTCCTTC | + |
|
Preference number: 6 (lower is better) Translates to: GRDAEGVCSCNFRRS*HIPITTMLLHIFSF Trigger: GAAGGAGAATATGTGGAGTAACATCGTCGTGATTGGTATATGCAAAGACCTCCTGAAATTACAGGAGCAAACTCCTTCCGCATCTCGACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553921.1 |
||
| CDS CAA 72 bp | GCGGAAGGAGTTTGCTCCTGTAATTTCAGGAGGTCTTaGCATATACCAATCACGACGATGTTACTCCACATA | + |
|
Preference number: 6 (lower is better) Translates to: AEGVCSCNFRRS*HIPITTMLLHI Trigger: TATGTGGAGTAACATCGTCGTGATTGGTATATGCAAAGACCTCCTGAAATTACAGGAGCAAACTCCTTCCGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553921.1 |
||
| CDS GCA 72 bp | CGGAAGGAGTTTGCTCCTGTAATTTCAGGAGGTCTTTaGATATACCAATCACGACGATGTTACTCCACATAT | + |
|
Preference number: 6 (lower is better) Translates to: RKEFAPVISGGL*IYQSRRCYSTY Trigger: ATATGTGGAGTAACATCGTCGTGATTGGTATATGCAAAGACCTCCTGAAATTACAGGAGCAAACTCCTTCCG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553921.1 |
||
| CDS CCA 72 bp | GCTCTAATAAAAGCAGCACGACAACTTTCCAACAACTaGAAGGAAGGTATCATAAGGAAGACACATCTTACT | + |
|
Preference number: 6 (lower is better) Translates to: ALIKAARQLSNN*KEGIIRKTHLT Trigger: AGTAAGATGTGTCTTCCTTATGATACCTTCCTTCCAGTTGTTGGAAAGTTGTCGTGCTGCTTTTATTAGAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557631.6 |
||
| CDS CAA 90 bp | GGTCGAGATGCGGAAGGAGTTTGCTCCTGTAATTTCAGGAGGTCTTaGCATATACCTATTATTGCAAATAGATTTCGCTTTATTGGAAAA | + |
|
Preference number: 6 (lower is better) Translates to: GRDAEGVCSCNFRRS*HIPIIANRFRFIGK Trigger: TTTTCCAATAAAGCGAAATCTATTTGCAATAATAGGTATATGCAAAGACCTCCTGAAATTACAGGAGCAAACTCCTTCCGCATCTCGACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000557631.6 |
||
| CDS CAA 90 bp | GAGTTTGCTCCTGTAATTTCAGGAGGTCTTTGCATATACCTATTATaGCAAATAGATTTCGCTTTATTGGAAAAAGGCTATCAGTATTCC | + |
|
Preference number: 6 (lower is better) Translates to: EFAPVISGGLCIYLL*QIDFALLEKGYQYS Trigger: GGAATACTGATAGCCTTTTTCCAATAAAGCGAAATCTATTTGCAATAATAGGTATATGCAAAGACCTCCTGAAATTACAGGAGCAAACTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000557631.6 |
||