Pregenerated sensors for LINC01145 (Homo sapiens)
Ensembl gene IDs: ENSG00000272419Ensembl transcript IDs: ENST00000578899.5, ENST00000621033.1, ENST00000621798.4
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGGGGAGCTCTGAATATTTGTGAAGGGATCCTGCTGCATGCATGCTaGGTAAACATGCCTGTTACATGCAACCCATGTTCACTTTGGGGT | + |
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Preference number: 5 (lower is better) Translates to: GGALNICEGILLHAC*VNMPVTCNPCSLWG Trigger: ACCCCAAAGTGAACATGGGTTGCATGTAACAGGCATGTTTACTCAGCATGCATGCAGCAGGATCCCTTCACAAATATTCAGAGCTCCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000578899.5 ENST00000621033.1 ENST00000621798.4 |
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| CDS TCA 90 bp | TACCATGTTGGCACCTTGATCTCGGACTTCCAACCTCCAGAACTGTaGGAAATAAATTTCTGTCGTGAATTAGCCACCCAGTTTATGGTA | + |
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Preference number: 5 (lower is better) Translates to: YHVGTLISDFQPPEL*EINFCRELATQFMV Trigger: TACCATAAACTGGGTGGCTAATTCACGACAGAAATTTATTTCTCACAGTTCTGGAGGTTGGAAGTCCGAGATCAAGGTGCCAACATGGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621033.1 |
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| CDS CCA 90 bp | TCTTCTATTGAACTGCTTTCATTGAAAGCTCATTTATTGACTGTATaGCTGTGGATCAGTTTCAGGTCTCTTAACTCAGTCTGTTTATCT | + |
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Preference number: 5 (lower is better) Translates to: SSIELLSLKAHLLTV*LWISFRSLNSVCLS Trigger: AGATAAACAGACTGAGTTAAGAGACCTGAAACTGATCCACAGCCATACAGTCAATAAATGAGCTTTCAATGAAAGCAGTTCAATAGAAGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621033.1 |
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| CDS CCA 90 bp | ATTGAACTGCTTTCATTGAAAGCTCATTTATTGACTGTATGGCTGTaGATCAGTTTCAGGTCTCTTAACTCAGTCTGTTTATCTATTTGT | + |
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Preference number: 5 (lower is better) Translates to: IELLSLKAHLLTVWL*ISFRSLNSVCLSIC Trigger: ACAAATAGATAAACAGACTGAGTTAAGAGACCTGAAACTGATCCACAGCCATACAGTCAATAAATGAGCTTTCAATGAAAGCAGTTCAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621033.1 |
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| CDS TCA 72 bp | GGCCATTCTGACAGACTGGGAGGCATAGCTTCCTGCTaGAACCCGAAAAGTAGGTTTCCAGGGAGGGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: GHSDRLGGIASC*NPKSRFPGRGG Trigger: CCCTCCCCTCCCTGGAAACCTACTTTTCGGGTTTCAGCAGGAAGCTATGCCTCCCAGTCTGTCAGAATGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000578899.5 ENST00000621033.1 ENST00000621798.4 |
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| CDS TCA 72 bp | TGTGTAGGGAGGGCTCAGTCAGTTTATGGTAATAGGTaGGCTGCAAGTGCTTCAGCATTGCTTATCTCAAGG | + |
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Preference number: 6 (lower is better) Translates to: CVGRAQSVYGNR*AASASALLISR Trigger: CCTTGAGATAAGCAATGCTGAAGCACTTGCAGCTCACCTATTACCATAAACTGACTGAGCCCTCCCTACACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000578899.5 ENST00000621033.1 ENST00000621798.4 |
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| CDS TCA 72 bp | AAAGTCCCTCATCATAACCCTACCATGTTGGCACCTTaGTCTCGGACTTCCAACCTCCAGAACTGTGAGAAA | + |
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Preference number: 6 (lower is better) Translates to: KVPHHNPTMLAP*SRTSNLQNCEK Trigger: TTTCTCACAGTTCTGGAGGTTGGAAGTCCGAGATCAAGGTGCCAACATGGTAGGGTTATGATGAGGGACTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621033.1 |
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| CDS TCA 72 bp | CTGAATATTTGTGAAGGGATCCTGCTGCATGCATGCTaGGTAAACATGCCTGTTACATGCAACCCATGTTCA | + |
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Preference number: 6 (lower is better) Translates to: LNICEGILLHAC*VNMPVTCNPCS Trigger: TGAACATGGGTTGCATGTAACAGGCATGTTTACTCAGCATGCATGCAGCAGGATCCCTTCACAAATATTCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000578899.5 ENST00000621033.1 ENST00000621798.4 |
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| CDS TCA 72 bp | CCTGATGCCTTGTCTGTAATAGCTTATAGTAAGCCTTaGAGTCAGATAGTACAAGTCCTTGTTCTTTTGCAC | + |
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Preference number: 6 (lower is better) Translates to: PDALSVIAYSKP*SQIVQVLVLLH Trigger: GTGCAAAAGAACAAGGACTTGTACTATCTGACTTCAAGGCTTACTATAAGCTATTACAGACAAGGCATCAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621033.1 |
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| CDS CCA 72 bp | CTTTCATTGAAAGCTCATTTATTGACTGTATGGCTGTaGATCAGTTTCAGGTCTCTTAACTCAGTCTGTTTA | + |
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Preference number: 6 (lower is better) Translates to: LSLKAHLLTVWL*ISFRSLNSVCL Trigger: TAAACAGACTGAGTTAAGAGACCTGAAACTGATCCACAGCCATACAGTCAATAAATGAGCTTTCAATGAAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000621033.1 |
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