Pregenerated sensors for LINC01123 (Homo sapiens)
Ensembl gene IDs: ENSG00000204588Ensembl transcript IDs: ENST00000336905.3, ENST00000419296.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 72 bp | GCTAAAGTCAAGGTGCTGGCGGGGCTGTGTCCCTTCTaGAGGCTCAAGGAAAGAATCGGGTCCCTGCCTTTT | + |
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Preference number: 6 (lower is better) Translates to: AKVKVLAGLCPF*RLKERIGSLPF Trigger: AAAAGGCAGGGACCCGATTCTTTCCTTGAGCCTCCAGAAGGGACACAGCCCCGCCAGCACCTTGACTTTAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000336905.3 |
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| CDS CAA 72 bp | CTCCATCCTCAAAGCCAGCAACAGCAGGTGAAGTCCTaGCCCATCGTGCATCACTCTCCCTTCTGCCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: LHPQSQQQQVKS*PIVHHSPFCLL Trigger: AAGGAGGCAGAAGGGAGAGTGATGCACGATGGGCAAGGACTTCACCTGCTGTTGCTGGCTTTGAGGATGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000336905.3 |
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| CDS TCA 72 bp | AGGGCGGGGCAGATCAGGGAAATGGGCAGTGGCTGCTaGTGGGTACGTAGTTTCTTCTGGAGTGATGAATGT | + |
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Preference number: 6 (lower is better) Translates to: RAGQIREMGSGC*WVRSFFWSDEC Trigger: ACATTCATCACTCCAGAAGAAACTACGTACCCATCAGCAGCCACTGCCCATTTCCCTGATCTGCCCCGCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000336905.3 ENST00000419296.1 |
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| CDS CCA 72 bp | CATTCACCTTCCAAGGTAAGGAGCCAGTTCCAGACCTaGGTTTGTGCAGCTCCAAGCTCCCCCGTCTTTCTA | + |
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Preference number: 6 (lower is better) Translates to: HSPSKVRSQFQT*VCAAPSSPVFL Trigger: TAGAAAGACGGGGGAGCTTGGAGCTGCACAAACCCAGGTCTGGAACTGGCTCCTTACCTTGGAAGGTGAATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000336905.3 ENST00000419296.1 |
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| CDS CAA 72 bp | ACCTTCCAAGGTAAGGAGCCAGTTCCAGACCTGGGTTaGTGCAGCTCCAAGCTCCCCCGTCTTTCTACAATG | + |
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Preference number: 6 (lower is better) Translates to: TFQGKEPVPDLG*CSSKLPRLSTM Trigger: CATTGTAGAAAGACGGGGGAGCTTGGAGCTGCACAAACCCAGGTCTGGAACTGGCTCCTTACCTTGGAAGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000336905.3 ENST00000419296.1 |
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| CDS CAA 90 bp | GCCTCCTTCCTCCATCCTCAAAGCCAGCAACAGCAGGTGAAGTCCTaGCCCATCGTGCATCACTCTCCCTTCTGCCTCCTTCAACTTTTT | + |
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Preference number: 6 (lower is better) Translates to: ASFLHPQSQQQQVKS*PIVHHSPFCLLQLF Trigger: AAAAAGTTGAAGGAGGCAGAAGGGAGAGTGATGCACGATGGGCAAGGACTTCACCTGCTGTTGCTGGCTTTGAGGATGGAGGAAGGAGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000336905.3 |
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| CDS CAA 90 bp | GGATCATTCACCTTCCAAGGTAAGGAGCCAGTTCCAGACCTGGGTTaGTGCAGCTCCAAGCTCCCCCGTCTTTCTACAATGCTAGATTTA | + |
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Preference number: 6 (lower is better) Translates to: GSFTFQGKEPVPDLG*CSSKLPRLSTMLDL Trigger: TAAATCTAGCATTGTAGAAAGACGGGGGAGCTTGGAGCTGCACAAACCCAGGTCTGGAACTGGCTCCTTACCTTGGAAGGTGAATGATCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000336905.3 ENST00000419296.1 |
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| CDS GCA 72 bp | AGTGATTTCTTGGGCCCTGCATTAGTTTTCTATTGCTaGTGCAACAAACAGCTACAGACTCAGTGGCTTCCA | + |
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Preference number: 6 (lower is better) Translates to: SDFLGPALVFYC*CNKQLQTQWLP Trigger: TGGAAGCCACTGAGTCTGTAGCTGTTTGTTGCAGCAGCAATAGAAAACTAATGCAGGGCCCAAGAAATCACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000336905.3 |
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| CDS GCA 72 bp | ACCAGTGATTTCTTGGGCCCTGCATTAGTTTTCTATTaGTGCTGCAACAAACAGCTACAGACTCAGTGGCTT | + |
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Preference number: 6 (lower is better) Translates to: TSDFLGPALVFY*CCNKQLQTQWL Trigger: AAGCCACTGAGTCTGTAGCTGTTTGTTGCAGCAGCAATAGAAAACTAATGCAGGGCCCAAGAAATCACTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000336905.3 |
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| CDS CCA 72 bp | TTCTATTGCTGCTGCAACAAACAGCTACAGACTCAGTaGCTTCCATTTCTGTCTTATAGTTCTGATTGCCAA | + |
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Preference number: 6 (lower is better) Translates to: FYCCCNKQLQTQ*LPFLSYSSDCQ Trigger: TTGGCAATCAGAACTATAAGACAGAAATGGAAGCCACTGAGTCTGTAGCTGTTTGTTGCAGCAGCAATAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000336905.3 |
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