Pregenerated sensors for LINC01117 (Homo sapiens)
Ensembl gene IDs: ENSG00000224577Ensembl transcript IDs: ENST00000443670.1, ENST00000652227.1, ENST00000652995.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCCCGCCGAAGGATGCCGAGGATCGGGCAAGGCCGGCGTCCGGTCTaGGCGGGGCGCGGGTGCTCTCCGAAGGCCGCGAGCCACGGGCCT | + |
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Preference number: 5 (lower is better) Translates to: PRRRMPRIGQGRRPV*AGRGCSPKAASHGP Trigger: AGGCCCGTGGCTCGCGGCCTTCGGAGAGCACCCGCGCCCCGCGCAGACCGGACGCCGGCCTTGCCCGATCCTCGGCATCCTTCGGCGGGG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652227.1 |
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| CDS GCA 90 bp | CCGAGGATCGGGCAAGGCCGGCGTCCGGTCTGCGCGGGGCGCGGGTaGTCTCCGAAGGCCGCGAGCCACGGGCCTCGCTGCGGGTTCAAG | + |
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Preference number: 5 (lower is better) Translates to: PRIGQGRRPVCAGRG*SPKAASHGPRCGFK Trigger: CTTGAACCCGCAGCGAGGCCCGTGGCTCGCGGCCTTCGGAGAGCACCCGCGCCCCGCGCAGACCGGACGCCGGCCTTGCCCGATCCTCGG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652227.1 |
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| CDS GCA 90 bp | GCGGGGCGCGGGTGCTCTCCGAAGGCCGCGAGCCACGGGCCTCGCTaGGGGTTCAAGTGCGTCCGGGTTTGGACGTCGCGGCTCCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: AGRGCSPKAASHGPR*GFKCVRVWTSRLQE Trigger: CTCCTGGAGCCGCGACGTCCAAACCCGGACGCACTTGAACCCGCAGCGAGGCCCGTGGCTCGCGGCCTTCGGAGAGCACCCGCGCCCCGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652227.1 |
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| CDS CCA 90 bp | GCCGCGAGCCACGGGCCTCGCTGCGGGTTCAAGTGCGTCCGGGTTTaGACGTCGCGGCTCCAGGAGTGTGCTCTCTCTCCTGCCCATCCC | + |
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Preference number: 5 (lower is better) Translates to: AASHGPRCGFKCVRV*TSRLQECALSPAHP Trigger: GGGATGGGCAGGAGAGAGAGCACACTCCTGGAGCCGCGACGTCCAAACCCGGACGCACTTGAACCCGCAGCGAGGCCCGTGGCTCGCGGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652227.1 |
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| CDS GCA 90 bp | TGCTCTCCGAAGGCCGCGAGCCACGGGCCTCGCTGCGGGTTCAAGTaGGTCCGGGTTTGGACGTCGCGGCTCCAGGAGTGTGCTCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: CSPKAASHGPRCGFK*VRVWTSRLQECALS Trigger: AGAGAGAGCACACTCCTGGAGCCGCGACGTCCAAACCCGGACGCACTTGAACCCGCAGCGAGGCCCGTGGCTCGCGGCCTTCGGAGAGCA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652227.1 |
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| CDS GCA 90 bp | CGGGTTCAAGTGCGTCCGGGTTTGGACGTCGCGGCTCCAGGAGTGTaGTCTCTCTCCTGCCCATCCCCTCCCCGGAGTTCAGCGCATCCG | + |
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Preference number: 5 (lower is better) Translates to: RVQVRPGLDVAAPGV*SLSCPSPPRSSAHP Trigger: CGGATGCGCTGAACTCCGGGGAGGGGATGGGCAGGAGAGAGAGCACACTCCTGGAGCCGCGACGTCCAAACCCGGACGCACTTGAACCCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652227.1 |
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| CDS CCA 90 bp | CTCCCAGCTGCATATCCTGGCTCCAGCTTGTTGTGCTGGCTCAACTaGCTCATGAGTTCATTTTCCAGCTCCTCCCATGCTTCATACTGG | + |
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Preference number: 5 (lower is better) Translates to: LPAAYPGSSLLCWLN*LMSSFSSSSHASYW Trigger: CCAGTATGAAGCATGGGAGGAGCTGGAAAATGAACTCATGAGCCAGTTGAGCCAGCACAACAAGCTGGAGCCAGGATATGCAGCTGGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652227.1 |
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| CDS CCA 90 bp | ATTCCTTCCGTCCCTGGCAGCAGCCCTGCCAGCATCGGGGCCTCCTaGAATGATTTCCTGAGGTGTGATGTTATTTATGGTGTGCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: IPSVPGSSPASIGAS*NDFLRCDVIYGVLS Trigger: AGAAAGCACACCATAAATAACATCACACCTCAGGAAATCATTCCAGGAGGCCCCGATGCTGGCAGGGCTGCTGCCAGGGACGGAAGGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652227.1 |
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| CDS GCA 90 bp | GCTTTGGGCAAGCAATTAACCTTTGGTGTCTCAGTGACTTCATCTTaGTTTCAGGGTCAGGAGGTACAATGGCCTTCTTTTGCAGCAAGA | + |
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Preference number: 5 (lower is better) Translates to: ALGKQLTFGVSVTSS*FQGQEVQWPSFAAR Trigger: TCTTGCTGCAAAAGAAGGCCATTGTACCTCCTGACCCTGAAAGCAAGATGAAGTCACTGAGACACCAAAGGTTAATTGCTTGCCCAAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000443670.1 ENST00000652227.1 ENST00000652995.1 |
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| CDS CCA 90 bp | GTACTCACCAAGTTGCTACATGGCTTTGGGCAAGCAATTAACCTTTaGTGTCTCAGTGACTTCATCTTGCTTTCAGGGTCAGGAGGTACA | + |
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Preference number: 5 (lower is better) Translates to: VLTKLLHGFGQAINL*CLSDFILLSGSGGT Trigger: TGTACCTCCTGACCCTGAAAGCAAGATGAAGTCACTGAGACACCAAAGGTTAATTGCTTGCCCAAAGCCATGTAGCAACTTGGTGAGTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652995.1 |
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| CDS CCA 90 bp | ACTTCAACCAAGTTGCTACATGGCTTTGGGCAAGCAATTAACCTTTaGTGTCTCAGTGACTTCATCTTGCTTTCAGGGTCAGGAGGTACA | + |
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Preference number: 5 (lower is better) Translates to: TSTKLLHGFGQAINL*CLSDFILLSGSGGT Trigger: TGTACCTCCTGACCCTGAAAGCAAGATGAAGTCACTGAGACACCAAAGGTTAATTGCTTGCCCAAAGCCATGTAGCAACTTGGTTGAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652227.1 |
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| CDS GCA 72 bp | AGGATGCCGAGGATCGGGCAAGGCCGGCGTCCGGTCTaGGCGGGGCGCGGGTGCTCTCCGAAGGCCGCGAGC | + |
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Preference number: 6 (lower is better) Translates to: RMPRIGQGRRPV*AGRGCSPKAAS Trigger: GCTCGCGGCCTTCGGAGAGCACCCGCGCCCCGCGCAGACCGGACGCCGGCCTTGCCCGATCCTCGGCATCCT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652227.1 |
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| CDS GCA 72 bp | GGGTGCTCTCCGAAGGCCGCGAGCCACGGGCCTCGCTaGGGGTTCAAGTGCGTCCGGGTTTGGACGTCGCGG | + |
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Preference number: 6 (lower is better) Translates to: GCSPKAASHGPR*GFKCVRVWTSR Trigger: CCGCGACGTCCAAACCCGGACGCACTTGAACCCGCAGCGAGGCCCGTGGCTCGCGGCCTTCGGAGAGCACCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652227.1 |
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| CDS CAA 90 bp | GGCCGCGAGCCACGGGCCTCGCTGCGGGTTCAAGTGCGTCCGGGTTaGGACGTCGCGGCTCCAGGAGTGTGCTCTCTCTCCTGCCCATCC | + |
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Preference number: 6 (lower is better) Translates to: GREPRASLRVQVRPG*DVAAPGVCSLSCPS Trigger: GGATGGGCAGGAGAGAGAGCACACTCCTGGAGCCGCGACGTCCAAACCCGGACGCACTTGAACCCGCAGCGAGGCCCGTGGCTCGCGGCC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652227.1 |
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| CDS GCA 72 bp | AAGGCCGCGAGCCACGGGCCTCGCTGCGGGTTCAAGTaGGTCCGGGTTTGGACGTCGCGGCTCCAGGAGTGT | + |
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Preference number: 6 (lower is better) Translates to: KAASHGPRCGFK*VRVWTSRLQEC Trigger: ACACTCCTGGAGCCGCGACGTCCAAACCCGGACGCACTTGAACCCGCAGCGAGGCCCGTGGCTCGCGGCCTT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652227.1 |
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| CDS CAA 72 bp | CCACGGGCCTCGCTGCGGGTTCAAGTGCGTCCGGGTTaGGACGTCGCGGCTCCAGGAGTGTGCTCTCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: PRASLRVQVRPG*DVAAPGVCSLS Trigger: GGAGAGAGAGCACACTCCTGGAGCCGCGACGTCCAAACCCGGACGCACTTGAACCCGCAGCGAGGCCCGTGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652227.1 |
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| CDS CCA 72 bp | CACGGGCCTCGCTGCGGGTTCAAGTGCGTCCGGGTTTaGACGTCGCGGCTCCAGGAGTGTGCTCTCTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: HGPRCGFKCVRV*TSRLQECALSP Trigger: AGGAGAGAGAGCACACTCCTGGAGCCGCGACGTCCAAACCCGGACGCACTTGAACCCGCAGCGAGGCCCGTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652227.1 |
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| CDS CCA 72 bp | CATCCCCTGGCAGGGCCTGAGACACGGGCTGTTGGCTaGACACTCGCTCCCAGCTGCATATCCTGGCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: HPLAGPETRAVG*TLAPSCISWLQ Trigger: CTGGAGCCAGGATATGCAGCTGGGAGCGAGTGTCCAGCCAACAGCCCGTGTCTCAGGCCCTGCCAGGGGATG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652227.1 |
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| CDS GCA 72 bp | CGTGTGTTAAATGATCACGTATGCCCCGCCGAAGGATaGCGAGGATCGGGCAAGGCCGGCGTCCGGTCTGCG | + |
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Preference number: 6 (lower is better) Translates to: RVLNDHVCPAEG*RGSGKAGVRSA Trigger: CGCAGACCGGACGCCGGCCTTGCCCGATCCTCGGCATCCTTCGGCGGGGCATACGTGATCATTTAACACACG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443670.1 |
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| CDS TCA 72 bp | CCCCGGAGCATTTGCATCATTGCTTCTCTTGCTAATTaGTTCATCCCCTGGCAGGGCCTGAGACACGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: PRSICIIASLAN*FIPWQGLRHGL Trigger: CAGCCCGTGTCTCAGGCCCTGCCAGGGGATGAATCAATTAGCAAGAGAAGCAATGATGCAAATGCTCCGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000652227.1 |
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| CDS GCA 72 bp | TCGCTCCCAGCTGCATATCCTGGCTCCAGCTTGTTGTaGTGGCTCAACTGGCTCATGAGTTCATTTTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: SLPAAYPGSSLL*WLNWLMSSFSS Trigger: GCTGGAAAATGAACTCATGAGCCAGTTGAGCCAGCACAACAAGCTGGAGCCAGGATATGCAGCTGGGAGCGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652227.1 |
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| CDS CCA 72 bp | CTCCCAGCTGCATATCCTGGCTCCAGCTTGTTGTGCTaGCTCAACTGGCTCATGAGTTCATTTTCCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: LPAAYPGSSLLC*LNWLMSSFSSS Trigger: GGAGCTGGAAAATGAACTCATGAGCCAGTTGAGCCAGCACAACAAGCTGGAGCCAGGATATGCAGCTGGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652227.1 |
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| CDS CAA 90 bp | ATGTCTGCTAAACAACTGACGCTGGGCAACAGTGAGAATCAGAGCTaGAGTGCTGCCTCTGTAGTTCCAGCTTTGCAGGAGGCTGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: MSAKQLTLGNSENQS*SAASVVPALQEAEA Trigger: TGCCTCAGCCTCCTGCAAAGCTGGAACTACAGAGGCAGCACTCAAGCTCTGATTCTCACTGTTGCCCAGCGTCAGTTGTTTAGCAGACAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652995.1 |
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| CDS TCA 72 bp | CTGGCTCCAGCTTGTTGTGCTGGCTCAACTGGCTCATaGGTTCATTTTCCAGCTCCTCCCATGCTTCATACT | + |
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Preference number: 6 (lower is better) Translates to: LAPACCAGSTGS*VHFPAPPMLHT Trigger: AGTATGAAGCATGGGAGGAGCTGGAAAATGAACTCATGAGCCAGTTGAGCCAGCACAACAAGCTGGAGCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652227.1 |
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| CDS CAA 72 bp | AAACAACTGACGCTGGGCAACAGTGAGAATCAGAGCTaGAGTGCTGCCTCTGTAGTTCCAGCTTTGCAGGAG | + |
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Preference number: 6 (lower is better) Translates to: KQLTLGNSENQS*SAASVVPALQE Trigger: CTCCTGCAAAGCTGGAACTACAGAGGCAGCACTCAAGCTCTGATTCTCACTGTTGCCCAGCGTCAGTTGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652995.1 |
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| CDS TCA 72 bp | GCCCTGCCAGCATCGGGGCCTCCTGGAATGATTTCCTaGGGTGTGATGTTATTTATGGTGTGCTTTCTCTAT | + |
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Preference number: 6 (lower is better) Translates to: ALPASGPPGMIS*GVMLFMVCFLY Trigger: ATAGAGAAAGCACACCATAAATAACATCACACCTCAGGAAATCATTCCAGGAGGCCCCGATGCTGGCAGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000652227.1 |
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| CDS CAA 72 bp | AACAGCATCCCAAGTGACCCCGGAGCATTTGCATCATaGCTTCTCTTGCTAATTGATTCATCCCCTGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: NSIPSDPGAFAS*LLLLIDSSPGR Trigger: CCTGCCAGGGGATGAATCAATTAGCAAGAGAAGCAATGATGCAAATGCTCCGGGGTCACTTGGGATGCTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000652227.1 |
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| CDS TCA 72 bp | TGCTTTCTCTATCAAAAAGGCAAACAGCATCCCAAGTaGCCCCGGAGCATTTGCATCATTGCTTCTCTTGCT | + |
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Preference number: 6 (lower is better) Translates to: CFLYQKGKQHPK*PRSICIIASLA Trigger: AGCAAGAGAAGCAATGATGCAAATGCTCCGGGGTCACTTGGGATGCTGTTTGCCTTTTTGATAGAGAAAGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000652227.1 |
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| CDS CCA 72 bp | AAGTTGCTACATGGCTTTGGGCAAGCAATTAACCTTTaGTGTCTCAGTGACTTCATCTTGCTTTCAGGGTCA | + |
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Preference number: 6 (lower is better) Translates to: KLLHGFGQAINL*CLSDFILLSGS Trigger: TGACCCTGAAAGCAAGATGAAGTCACTGAGACACCAAAGGTTAATTGCTTGCCCAAAGCCATGTAGCAACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000443670.1 ENST00000652227.1 ENST00000652995.1 |
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| CDS CAA 90 bp | AAGCACATATGTGGAGCTTTCGACACTAAAGTAACTTCAACCAAGTaGCTACATGGCTTTGGGCAAGCAATTAACCTTTGGTGTCTCAGT | + |
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Preference number: 6 (lower is better) Translates to: KHICGAFDTKVTSTK*LHGFGQAINLWCLS Trigger: ACTGAGACACCAAAGGTTAATTGCTTGCCCAAAGCCATGTAGCAACTTGGTTGAAGTTACTTTAGTGTCGAAAGCTCCACATATGTGCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652227.1 |
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| CDS CAA 90 bp | TTAGGTATCTTGCTGAATTTATTCTATCTTCAAATGAAGGATATGTaGGGGTCTGTCCCATCTCTAATTACCATCTCTTCGTTTGCATGG | + |
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Preference number: 6 (lower is better) Translates to: LGILLNLFYLQMKDM*GSVPSLITISSFAW Trigger: CCATGCAAACGAAGAGATGGTAATTAGAGATGGGACAGACCCCAACATATCCTTCATTTGAAGATAGAATAAATTCAGCAAGATACCTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652995.1 |
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| CDS CAA 72 bp | TTGCTGAATTTATTCTATCTTCAAATGAAGGATATGTaGGGGTCTGTCCCATCTCTAATTACCATCTCTTCG | + |
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Preference number: 6 (lower is better) Translates to: LLNLFYLQMKDM*GSVPSLITISS Trigger: CGAAGAGATGGTAATTAGAGATGGGACAGACCCCAACATATCCTTCATTTGAAGATAGAATAAATTCAGCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000443670.1 ENST00000652995.1 |
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