Pregenerated sensors for LINC01116 (Homo sapiens)
Ensembl gene IDs: ENSG00000163364Ensembl transcript IDs: ENST00000295549.9, ENST00000339037.4, ENST00000655532.1, ENST00000658669.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTTGGAGAGGAAGTCGGACTTCTTTTCCAGGCGGAGCCTCCACGATaGGCGTGGGCGCCTCGTGCGTGGGCCGGGGGCCTCGTGCGTGGG | + |
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Preference number: 5 (lower is better) Translates to: LGEEVGLLFQAEPPR*AWAPRAWAGGLVRG Trigger: CCCACGCACGAGGCCCCCGGCCCACGCACGAGGCGCCCACGCCCATCGTGGAGGCTCCGCCTGGAAAAGAAGTCCGACTTCCTCTCCAAG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000295549.9 |
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| CDS CCA 90 bp | CTGCTCGTCTTCAGCAAAGCGAGGGCCGGCTGCAAAGGCGCAGGCTaGCAGTTCGGGTCATTTCCTGCCGATTCCCCATTCCCCTCGGAG | + |
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Preference number: 5 (lower is better) Translates to: LLVFSKARAGCKGAG*QFGSFPADSPFPSE Trigger: CTCCGAGGGGAATGGGGAATCGGCAGGAAATGACCCGAACTGCCAGCCTGCGCCTTTGCAGCCGGCCCTCGCTTTGCTGAAGACGAGCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000295549.9 ENST00000339037.4 |
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| CDS CCA 90 bp | TCGGACAGCAGCGCTGGCATCATTTTGGAGCTGCAAAGCAAGACGTaGCGCGTTGATGAGCTAAAAAGGACCCGTCTTTCTCTGGGCCCC | + |
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Preference number: 5 (lower is better) Translates to: SDSSAGIILELQSKT*RVDELKRTRLSLGP Trigger: GGGGCCCAGAGAAAGACGGGTCCTTTTTAGCTCATCAACGCGCCACGTCTTGCTTTGCAGCTCCAAAATGATGCCAGCGCTGCTGTCCGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000658669.1 |
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| CDS GCA 72 bp | CCAGGCGGAGCCTCCACGATGGGCGTGGGCGCCTCGTaGGTGGGCCGGGGGCCTCGTGCGTGGGCGGGGATC | + |
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Preference number: 6 (lower is better) Translates to: PGGASTMGVGAS*VGRGPRAWAGI Trigger: GATCCCCGCCCACGCACGAGGCCCCCGGCCCACGCACGAGGCGCCCACGCCCATCGTGGAGGCTCCGCCTGG 79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000295549.9 |
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| CDS CCA 72 bp | GGACTTCTTTTCCAGGCGGAGCCTCCACGATGGGCGTaGGCGCCTCGTGCGTGGGCCGGGGGCCTCGTGCGT | + |
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Preference number: 6 (lower is better) Translates to: GLLFQAEPPRWA*APRAWAGGLVR Trigger: ACGCACGAGGCCCCCGGCCCACGCACGAGGCGCCCACGCCCATCGTGGAGGCTCCGCCTGGAAAAGAAGTCC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000295549.9 |
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| CDS CCA 72 bp | GAAGTCGGACTTCTTTTCCAGGCGGAGCCTCCACGATaGGCGTGGGCGCCTCGTGCGTGGGCCGGGGGCCTC | + |
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Preference number: 6 (lower is better) Translates to: EVGLLFQAEPPR*AWAPRAWAGGL Trigger: GAGGCCCCCGGCCCACGCACGAGGCGCCCACGCCCATCGTGGAGGCTCCGCCTGGAAAAGAAGTCCGACTTC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000295549.9 |
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| CDS GCA 72 bp | CTGCAAAGGCGCAGGCTGGCAGTTCGGGTCATTTCCTaGCGATTCCCCATTCCCCTCGGAGCAGCTTGGAGA | + |
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Preference number: 6 (lower is better) Translates to: LQRRRLAVRVIS*RFPIPLGAAWR Trigger: TCTCCAAGCTGCTCCGAGGGGAATGGGGAATCGGCAGGAAATGACCCGAACTGCCAGCCTGCGCCTTTGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000295549.9 ENST00000339037.4 |
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| CDS CCA 72 bp | TTCAGCAAAGCGAGGGCCGGCTGCAAAGGCGCAGGCTaGCAGTTCGGGTCATTTCCTGCCGATTCCCCATTC | + |
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Preference number: 6 (lower is better) Translates to: FSKARAGCKGAG*QFGSFPADSPF Trigger: GAATGGGGAATCGGCAGGAAATGACCCGAACTGCCAGCCTGCGCCTTTGCAGCCGGCCCTCGCTTTGCTGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000295549.9 ENST00000339037.4 ENST00000658669.1 |
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| CDS GCA 72 bp | TTTCGGGGTAAGGGGAGGCAAGACTTTGGTGGGAGCTaGTCGTCTTCAGCAAAGCGAGGGCCGGCTGCAAAG | + |
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Preference number: 6 (lower is better) Translates to: FRGKGRQDFGGS*SSSAKRGPAAK Trigger: CTTTGCAGCCGGCCCTCGCTTTGCTGAAGACGAGCAGCTCCCACCAAAGTCTTGCCTCCCCTTACCCCGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000295549.9 ENST00000339037.4 ENST00000658669.1 |
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| CDS CCA 72 bp | ATATTGACCCTTCGGACAGCAGCGCTGGCATCATTTTaGAGCTGCAAAGCAAGACGTGGCGCGTTGATGAGC | + |
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Preference number: 6 (lower is better) Translates to: ILTLRTAALASF*SCKARRGALMS Trigger: GCTCATCAACGCGCCACGTCTTGCTTTGCAGCTCCAAAATGATGCCAGCGCTGCTGTCCGAAGGGTCAATAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658669.1 |
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| CDS CAA 72 bp | AATATTGACCCTTCGGACAGCAGCGCTGGCATCATTTaGGAGCTGCAAAGCAAGACGTGGCGCGTTGATGAG | + |
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Preference number: 6 (lower is better) Translates to: NIDPSDSSAGII*ELQSKTWRVDE Trigger: CTCATCAACGCGCCACGTCTTGCTTTGCAGCTCCAAAATGATGCCAGCGCTGCTGTCCGAAGGGTCAATATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658669.1 |
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| CDS CCA 72 bp | AGCGCTGGCATCATTTTGGAGCTGCAAAGCAAGACGTaGCGCGTTGATGAGCTAAAAAGGACCCGTCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: SAGIILELQSKT*RVDELKRTRLS Trigger: AGAAAGACGGGTCCTTTTTAGCTCATCAACGCGCCACGTCTTGCTTTGCAGCTCCAAAATGATGCCAGCGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000658669.1 |
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| CDS CAA 90 bp | TGTGCCACTGTCCATTTATTTCCCATTTCACTTAACGCATTAATATaGACCCTTCGGACAGCAGCGCTGGCATCATTTTGGAGCTGCAAA | + |
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Preference number: 6 (lower is better) Translates to: CATVHLFPISLNALI*TLRTAALASFWSCK Trigger: TTTGCAGCTCCAAAATGATGCCAGCGCTGCTGTCCGAAGGGTCAATATTAATGCGTTAAGTGAAATGGGAAATAAATGGACAGTGGCACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658669.1 |
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| CDS TCA 72 bp | CTGTGTACTTCAGGGCCTTTGGGTCAGTTTTTAAGCTaGCTTGTCTGGAAAAGGTTATCACTTGGAGGGAAA | + |
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Preference number: 6 (lower is better) Translates to: LCTSGPLGQFLS*LVWKRLSLGGK Trigger: TTTCCCTCCAAGTGATAACCTTTTCCAGACAAGTCAGCTTAAAAACTGACCCAAAGGCCCTGAAGTACACAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000295549.9 ENST00000339037.4 ENST00000655532.1 ENST00000658669.1 |
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| CDS CAA 72 bp | GTCCATTTATTTCCCATTTCACTTAACGCATTAATATaGACCCTTCGGACAGCAGCGCTGGCATCATTTTGG | + |
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Preference number: 6 (lower is better) Translates to: VHLFPISLNALI*TLRTAALASFW Trigger: CCAAAATGATGCCAGCGCTGCTGTCCGAAGGGTCAATATTAATGCGTTAAGTGAAATGGGAAATAAATGGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000658669.1 |
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| CDS CAA 90 bp | TCACACATTAAAGTTACACTATGCGGCAATTACCCTAAGTTTATTTaGTGTCAGTTACAGCATGATGGGGATGCCAATCACAGAGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: SHIKVTLCGNYPKFI*CQLQHDGDANHRAL Trigger: GAGAGCTCTGTGATTGGCATCCCCATCATGCTGTAACTGACACAAAATAAACTTAGGGTAATTGCCGCATAGTGTAACTTTAATGTGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000295549.9 ENST00000339037.4 ENST00000655532.1 ENST00000658669.1 |
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| CDS CAA 72 bp | AAAGTTACACTATGCGGCAATTACCCTAAGTTTATTTaGTGTCAGTTACAGCATGATGGGGATGCCAATCAC | + |
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Preference number: 6 (lower is better) Translates to: KVTLCGNYPKFI*CQLQHDGDANH Trigger: GTGATTGGCATCCCCATCATGCTGTAACTGACACAAAATAAACTTAGGGTAATTGCCGCATAGTGTAACTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000295549.9 ENST00000339037.4 ENST00000655532.1 ENST00000658669.1 |
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| CDS CAA 72 bp | TTAGTGAGAGTGATGATGTTTGACCATAAGGCCTTGTaGAGAGTGACAACAATGAATGGGTTACACATTGCT | + |
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Preference number: 6 (lower is better) Translates to: LVRVMMFDHKAL*RVTTMNGLHIA Trigger: AGCAATGTGTAACCCATTCATTGTTGTCACTCTCAACAAGGCCTTATGGTCAAACATCATCACTCTCACTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000295549.9 ENST00000339037.4 ENST00000655532.1 ENST00000658669.1 |
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| CDS CAA 90 bp | ACTATCTCTTTAGTGAGAGTGATGATGTTTGACCATAAGGCCTTGTaGAGAGTGACAACAATGAATGGGTTACACATTGCTGATCTAGAT | + |
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Preference number: 6 (lower is better) Translates to: TISLVRVMMFDHKAL*RVTTMNGLHIADLD Trigger: ATCTAGATCAGCAATGTGTAACCCATTCATTGTTGTCACTCTCAACAAGGCCTTATGGTCAAACATCATCACTCTCACTAAAGAGATAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000295549.9 ENST00000339037.4 ENST00000655532.1 ENST00000658669.1 |
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| CDS TCA 72 bp | GTTGAGAGTGACAACAATGAATGGGTTACACATTGCTaGTCTAGATCAAGAAGCTTGTCAGATGTTACAGTA | + |
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Preference number: 6 (lower is better) Translates to: VESDNNEWVTHC*SRSRSLSDVTV Trigger: TACTGTAACATCTGACAAGCTTCTTGATCTAGATCAGCAATGTGTAACCCATTCATTGTTGTCACTCTCAAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000295549.9 ENST00000339037.4 ENST00000655532.1 ENST00000658669.1 |
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| CDS CAA 72 bp | TCTTTAGTGAGAGTGATGATGTTTGACCATAAGGCCTaGTTGAGAGTGACAACAATGAATGGGTTACACATT | + |
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Preference number: 6 (lower is better) Translates to: SLVRVMMFDHKA*LRVTTMNGLHI Trigger: AATGTGTAACCCATTCATTGTTGTCACTCTCAACAAGGCCTTATGGTCAAACATCATCACTCTCACTAAAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000295549.9 ENST00000339037.4 ENST00000655532.1 ENST00000658669.1 |
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| CDS CCA 72 bp | TTACTGCATTCACGTATTCTTCCAGTGTCTTTTTATTaGCTGTCAAGGACCATTAAATGGATCAACATAAAA | + |
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Preference number: 6 (lower is better) Translates to: LLHSRILPVSFY*LSRTIKWINIK Trigger: TTTTATGTTGATCCATTTAATGGTCCTTGACAGCCAATAAAAAGACACTGGAAGAATACGTGAATGCAGTAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000295549.9 |
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