Pregenerated sensors for LINC01111 (Homo sapiens)
Ensembl gene IDs: ENSG00000254300Ensembl transcript IDs: ENST00000518732.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGTATCCCAGGATTGCTCTTCATCTGCAGCTTCTTCTCTCGGAGTTaGAAGGAATCATTCTCAGGCTGTTCAGGTCTTCTGGTCAGTAGG | + |
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Preference number: 5 (lower is better) Translates to: CIPGLLFICSFFSRS*KESFSGCSGLLVSR Trigger: CCTACTGACCAGAAGACCTGAACAGCCTGAGAATGATTCCTTTCAACTCCGAGAGAAGAAGCTGCAGATGAAGAGCAATCCTGGGATACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518732.1 |
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| CDS TCA 72 bp | TTGGCATCTGACATCCCACTCTGTGCTTCAAGTTTTTaGCCTTTGATCCAAGGGCCTTTTCAGGGACTAGCT | + |
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Preference number: 6 (lower is better) Translates to: LASDIPLCASSF*PLIQGPFQGLA Trigger: AGCTAGTCCCTGAAAAGGCCCTTGGATCAAAGGTCAAAAACTTGAAGCACAGAGTGGGATGTCAGATGCCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000518732.1 |
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| CDS TCA 72 bp | GGAAAGAGGAAACAACCGAACAGGCTCCCACTGCCCTaGATGAAATCTACTGGTTGGACGTTCTGTTTGATT | + |
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Preference number: 6 (lower is better) Translates to: GKRKQPNRLPLP*MKSTGWTFCLI Trigger: AATCAAACAGAACGTCCAACCAGTAGATTTCATTCAGGGCAGTGGGAGCCTGTTCGGTTGTTTCCTCTTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518732.1 |
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| CDS CAA 72 bp | AGGATTGCTCTTCATCTGCAGCTTCTTCTCTCGGAGTaGAAAGGAATCATTCTCAGGCTGTTCAGGTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: RIALHLQLLLSE*KGIILRLFRSS Trigger: AGAAGACCTGAACAGCCTGAGAATGATTCCTTTCAACTCCGAGAGAAGAAGCTGCAGATGAAGAGCAATCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518732.1 |
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| CDS CAA 72 bp | GTTTTCAGTAAACAGTATCCTAATGTAGATGACGAGTaGATGGGTGCAGCAAACCACCATGGTAGTGTGTAC | + |
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Preference number: 6 (lower is better) Translates to: VFSKQYPNVDDE*MGAANHHGSVY Trigger: GTACACACTACCATGGTGGTTTGCTGCACCCATCAACTCGTCATCTACATTAGGATACTGTTTACTGAAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000518732.1 |
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