RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC01100 (Homo sapiens)

Ensembl gene IDs: ENSG00000242107

Ensembl transcript IDs: ENST00000471921.2

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp GGGCATGGCAGAGCCTGCGTTCCTGTGACTCGGCTGAGGCCGGTGTaGTGGAGACTTCCCGGCAGCCTCCCGGACCTGGTCTCTCCAAGG +
Preference number: 5 (lower is better)
Translates to: GHGRACVPVTRLRPV*WRLPGSLPDLVSPR
Trigger: CCTTGGAGAGACCAGGTCCGGGAGGCTGCCGGGAAGTCTCCATCACACCGGCCTCAGCCGAGTCACAGGAACGCAGGCTCTGCCATGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS TCA 90 bp ACTTCCCGGCAGCCTCCCGGACCTGGTCTCTCCAAGGTCAGATCTTaGAACTTCTGGGCACCCATGCGAGTGCCTGTCCTGGTGTGCCGA +
Preference number: 5 (lower is better)
Translates to: TSRQPPGPGLSKVRS*NFWAPMRVPVLVCR
Trigger: TCGGCACACCAGGACAGGCACTCGCATGGGTGCCCAGAAGTTTCAAGATCTGACCTTGGAGAGACCAGGTCCGGGAGGCTGCCGGGAAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CCA 90 bp CTGGGCACCCATGCGAGTGCCTGTCCTGGTGTGCCGACTTGCTCTTaGTCTGCGAAGCCAGGTGCTACGGATACAATTCCTCTGCAGCTT +
Preference number: 5 (lower is better)
Translates to: LGTHASACPGVPTCS*SAKPGATDTIPLQL
Trigger: AAGCTGCAGAGGAATTGTATCCGTAGCACCTGGCTTCGCAGACCAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATGGGTGCCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS GCA 90 bp GTCTCTCCAAGGTCAGATCTTGAAACTTCTGGGCACCCATGCGAGTaGCTGTCCTGGTGTGCCGACTTGCTCTTGGTCTGCGAAGCCAGG +
Preference number: 5 (lower is better)
Translates to: VSPRSDLETSGHPCE*LSWCADLLLVCEAR
Trigger: CCTGGCTTCGCAGACCAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATGGGTGCCCAGAAGTTTCAAGATCTGACCTTGGAGAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CCA 90 bp AGGTCAGATCTTGAAACTTCTGGGCACCCATGCGAGTGCCTGTCCTaGTGTGCCGACTTGCTCTTGGTCTGCGAAGCCAGGTGCTACGGA +
Preference number: 5 (lower is better)
Translates to: RSDLETSGHPCECLS*CADLLLVCEARCYG
Trigger: TCCGTAGCACCTGGCTTCGCAGACCAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATGGGTGCCCAGAAGTTTCAAGATCTGACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS GCA 90 bp CACCCATGCGAGTGCCTGTCCTGGTGTGCCGACTTGCTCTTGGTCTaGGAAGCCAGGTGCTACGGATACAATTCCTCTGCAGCTTGCATT +
Preference number: 5 (lower is better)
Translates to: HPCECLSWCADLLLV*EARCYGYNSSAACI
Trigger: AATGCAAGCTGCAGAGGAATTGTATCCGTAGCACCTGGCTTCGCAGACCAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATGGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS GCA 90 bp AAACTTCTGGGCACCCATGCGAGTGCCTGTCCTGGTGTGCCGACTTaGTCTTGGTCTGCGAAGCCAGGTGCTACGGATACAATTCCTCTG +
Preference number: 5 (lower is better)
Translates to: KLLGTHASACPGVPT*SWSAKPGATDTIPL
Trigger: CAGAGGAATTGTATCCGTAGCACCTGGCTTCGCAGACCAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATGGGTGCCCAGAAGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS GCA 90 bp GACCTGGTCTCTCCAAGGTCAGATCTTGAAACTTCTGGGCACCCATaGGAGTGCCTGTCCTGGTGTGCCGACTTGCTCTTGGTCTGCGAA +
Preference number: 5 (lower is better)
Translates to: DLVSPRSDLETSGHP*ECLSWCADLLLVCE
Trigger: TTCGCAGACCAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATGGGTGCCCAGAAGTTTCAAGATCTGACCTTGGAGAGACCAGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CCA 90 bp TGTAGGCCTAATCTCCGTGTGCTGGTGCTACGTCAAGTGTGGTGGTaGTTAGGAGTCACCTTCCGTGTGAGGTCAAGCGTTCTGGCTCCC +
Preference number: 5 (lower is better)
Translates to: CRPNLRVLVLRQVWW*LGVTFRVRSSVLAP
Trigger: GGGAGCCAGAACGCTTGACCTCACACGGAAGGTGACTCCTAACCACCACCACACTTGACGTAGCACCAGCACACGGAGATTAGGCCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CCA 90 bp TGGTGTAGGCCTAATCTCCGTGTGCTGGTGCTACGTCAAGTGTGGTaGTGGTTAGGAGTCACCTTCCGTGTGAGGTCAAGCGTTCTGGCT +
Preference number: 5 (lower is better)
Translates to: WCRPNLRVLVLRQVW*WLGVTFRVRSSVLA
Trigger: AGCCAGAACGCTTGACCTCACACGGAAGGTGACTCCTAACCACCACCACACTTGACGTAGCACCAGCACACGGAGATTAGGCCTACACCA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS TCA 90 bp GCAGGGTGCCAGGAGTGGCCCATTCCCTGCCTGAAGGCAGTGTGCTaGAATGAAGAGGCACATTCAACAGCATTGTCATACATTGGACCA +
Preference number: 5 (lower is better)
Translates to: AGCQEWPIPCLKAVC*NEEAHSTALSYIGP
Trigger: TGGTCCAATGTATGACAATGCTGTTGAATGTGCCTCTTCATTTCAGCACACTGCCTTCAGGCAGGGAATGGGCCACTCCTGGCACCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CCA 90 bp TATATCATTCTATATTTTGGAAAACAGTACTTTGGGAGTTCCTTCTaGACACTTTGCTGTGATTCAACACCACATTCCCGGTTTGAAATT +
Preference number: 5 (lower is better)
Translates to: YIILYFGKQYFGSSF*TLCCDSTPHSRFEI
Trigger: AATTTCAAACCGGGAATGTGGTGTTGAATCACAGCAAAGTGTCCAGAAGGAACTCCCAAAGTACTGTTTTCCAAAATATAGAATGATATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS TCA 72 bp AGAGCCTGCGTTCCTGTGACTCGGCTGAGGCCGGTGTaGTGGAGACTTCCCGGCAGCCTCCCGGACCTGGTC +
Preference number: 6 (lower is better)
Translates to: RACVPVTRLRPV*WRLPGSLPDLV
Trigger: GACCAGGTCCGGGAGGCTGCCGGGAAGTCTCCATCACACCGGCCTCAGCCGAGTCACAGGAACGCAGGCTCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CAA 90 bp GACTTCCCGGCAGCCTCCCGGACCTGGTCTCTCCAAGGTCAGATCTaGAAACTTCTGGGCACCCATGCGAGTGCCTGTCCTGGTGTGCCG +
Preference number: 6 (lower is better)
Translates to: DFPAASRTWSLQGQI*KLLGTHASACPGVP
Trigger: CGGCACACCAGGACAGGCACTCGCATGGGTGCCCAGAAGTTTCAAGATCTGACCTTGGAGAGACCAGGTCCGGGAGGCTGCCGGGAAGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CAA 72 bp GGGCACCCATGCGAGTGCCTGTCCTGGTGTGCCGACTaGCTCTTGGTCTGCGAAGCCAGGTGCTACGGATAC +
Preference number: 6 (lower is better)
Translates to: GHPCECLSWCAD*LLVCEARCYGY
Trigger: GTATCCGTAGCACCTGGCTTCGCAGACCAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATGGGTGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS GCA 72 bp GGCACCCATGCGAGTGCCTGTCCTGGTGTGCCGACTTaGTCTTGGTCTGCGAAGCCAGGTGCTACGGATACA +
Preference number: 6 (lower is better)
Translates to: GTHASACPGVPT*SWSAKPGATDT
Trigger: TGTATCCGTAGCACCTGGCTTCGCAGACCAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATGGGTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS TCA 72 bp CAGCCTCCCGGACCTGGTCTCTCCAAGGTCAGATCTTaGAACTTCTGGGCACCCATGCGAGTGCCTGTCCTG +
Preference number: 6 (lower is better)
Translates to: QPPGPGLSKVRS*NFWAPMRVPVL
Trigger: CAGGACAGGCACTCGCATGGGTGCCCAGAAGTTTCAAGATCTGACCTTGGAGAGACCAGGTCCGGGAGGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS GCA 72 bp AACTTCTGGGCACCCATGCGAGTGCCTGTCCTGGTGTaGCGACTTGCTCTTGGTCTGCGAAGCCAGGTGCTA +
Preference number: 6 (lower is better)
Translates to: NFWAPMRVPVLV*RLALGLRSQVL
Trigger: TAGCACCTGGCTTCGCAGACCAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATGGGTGCCCAGAAGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CCA 72 bp CTTGAAACTTCTGGGCACCCATGCGAGTGCCTGTCCTaGTGTGCCGACTTGCTCTTGGTCTGCGAAGCCAGG +
Preference number: 6 (lower is better)
Translates to: LETSGHPCECLS*CADLLLVCEAR
Trigger: CCTGGCTTCGCAGACCAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATGGGTGCCCAGAAGTTTCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CCA 72 bp CGGTGTGATGGAGACTTCCCGGCAGCCTCCCGGACCTaGTCTCTCCAAGGTCAGATCTTGAAACTTCTGGGC +
Preference number: 6 (lower is better)
Translates to: RCDGDFPAASRT*SLQGQILKLLG
Trigger: GCCCAGAAGTTTCAAGATCTGACCTTGGAGAGACCAGGTCCGGGAGGCTGCCGGGAAGTCTCCATCACACCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CAA 72 bp GCAGCCTCCCGGACCTGGTCTCTCCAAGGTCAGATCTaGAAACTTCTGGGCACCCATGCGAGTGCCTGTCCT +
Preference number: 6 (lower is better)
Translates to: AASRTWSLQGQI*KLLGTHASACP
Trigger: AGGACAGGCACTCGCATGGGTGCCCAGAAGTTTCAAGATCTGACCTTGGAGAGACCAGGTCCGGGAGGCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CAA 90 bp TCTGGGCACCCATGCGAGTGCCTGTCCTGGTGTGCCGACTTGCTCTaGGTCTGCGAAGCCAGGTGCTACGGATACAATTCCTCTGCAGCT +
Preference number: 6 (lower is better)
Translates to: SGHPCECLSWCADLL*VCEARCYGYNSSAA
Trigger: AGCTGCAGAGGAATTGTATCCGTAGCACCTGGCTTCGCAGACCAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATGGGTGCCCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CAA 72 bp CCATGCGAGTGCCTGTCCTGGTGTGCCGACTTGCTCTaGGTCTGCGAAGCCAGGTGCTACGGATACAATTCC +
Preference number: 6 (lower is better)
Translates to: PCECLSWCADLL*VCEARCYGYNS
Trigger: GGAATTGTATCCGTAGCACCTGGCTTCGCAGACCAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CAA 90 bp GAAACTTCTGGGCACCCATGCGAGTGCCTGTCCTGGTGTGCCGACTaGCTCTTGGTCTGCGAAGCCAGGTGCTACGGATACAATTCCTCT +
Preference number: 6 (lower is better)
Translates to: ETSGHPCECLSWCAD*LLVCEARCYGYNSS
Trigger: AGAGGAATTGTATCCGTAGCACCTGGCTTCGCAGACCAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATGGGTGCCCAGAAGTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS GCA 72 bp AGGTCAGATCTTGAAACTTCTGGGCACCCATGCGAGTaGCTGTCCTGGTGTGCCGACTTGCTCTTGGTCTGC +
Preference number: 6 (lower is better)
Translates to: RSDLETSGHPCE*LSWCADLLLVC
Trigger: GCAGACCAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATGGGTGCCCAGAAGTTTCAAGATCTGACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CCA 72 bp CATGCGAGTGCCTGTCCTGGTGTGCCGACTTGCTCTTaGTCTGCGAAGCCAGGTGCTACGGATACAATTCCT +
Preference number: 6 (lower is better)
Translates to: HASACPGVPTCS*SAKPGATDTIP
Trigger: AGGAATTGTATCCGTAGCACCTGGCTTCGCAGACCAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS GCA 72 bp TCTCCAAGGTCAGATCTTGAAACTTCTGGGCACCCATaGGAGTGCCTGTCCTGGTGTGCCGACTTGCTCTTG +
Preference number: 6 (lower is better)
Translates to: SPRSDLETSGHP*ECLSWCADLLL
Trigger: CAAGAGCAAGTCGGCACACCAGGACAGGCACTCGCATGGGTGCCCAGAAGTTTCAAGATCTGACCTTGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CCA 72 bp CCTAATCTCCGTGTGCTGGTGCTACGTCAAGTGTGGTaGTGGTTAGGAGTCACCTTCCGTGTGAGGTCAAGC +
Preference number: 6 (lower is better)
Translates to: PNLRVLVLRQVW*WLGVTFRVRSS
Trigger: GCTTGACCTCACACGGAAGGTGACTCCTAACCACCACCACACTTGACGTAGCACCAGCACACGGAGATTAGG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CCA 72 bp AGGCCTAATCTCCGTGTGCTGGTGCTACGTCAAGTGTaGTGGTGGTTAGGAGTCACCTTCCGTGTGAGGTCA +
Preference number: 6 (lower is better)
Translates to: RPNLRVLVLRQV*WWLGVTFRVRS
Trigger: TGACCTCACACGGAAGGTGACTCCTAACCACCACCACACTTGACGTAGCACCAGCACACGGAGATTAGGCCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CCA 72 bp AATCTCCGTGTGCTGGTGCTACGTCAAGTGTGGTGGTaGTTAGGAGTCACCTTCCGTGTGAGGTCAAGCGTT +
Preference number: 6 (lower is better)
Translates to: NLRVLVLRQVWW*LGVTFRVRSSV
Trigger: AACGCTTGACCTCACACGGAAGGTGACTCCTAACCACCACCACACTTGACGTAGCACCAGCACACGGAGATT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS TCA 72 bp ATTGTCATACATTGGACCATGAGGATCAGCATCAACTaGGAGCAGCTTGTTAAGACGCGAAGTCTCAGCCCC +
Preference number: 6 (lower is better)
Translates to: IVIHWTMRISIN*EQLVKTRSLSP
Trigger: GGGGCTGAGACTTCGCGTCTTAACAAGCTGCTCTCAGTTGATGCTGATCCTCATGGTCCAATGTATGACAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS TCA 72 bp GAGGCACATTCAACAGCATTGTCATACATTGGACCATaGGGATCAGCATCAACTGAGAGCAGCTTGTTAAGA +
Preference number: 6 (lower is better)
Translates to: EAHSTALSYIGP*GSASTESSLLR
Trigger: TCTTAACAAGCTGCTCTCAGTTGATGCTGATCCTCATGGTCCAATGTATGACAATGCTGTTGAATGTGCCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CAA 72 bp GAAATGAAGAGGCACATTCAACAGCATTGTCATACATaGGACCATGAGGATCAGCATCAACTGAGAGCAGCT +
Preference number: 6 (lower is better)
Translates to: EMKRHIQQHCHT*DHEDQHQLRAA
Trigger: AGCTGCTCTCAGTTGATGCTGATCCTCATGGTCCAATGTATGACAATGCTGTTGAATGTGCCTCTTCATTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000471921.2
CDS CAA 72 bp GGACACTTTGCTGTGATTCAACACCACATTCCCGGTTaGAAATTTAGTTCCTTTTCTAACAGGTGTCTATGT +
Preference number: 6 (lower is better)
Translates to: GHFAVIQHHIPG*KFSSFSNRCLC
Trigger: ACATAGACACCTGTTAGAAAAGGAACTAAATTTCAAACCGGGAATGTGGTGTTGAATCACAGCAAAGTGTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000471921.2