Pregenerated sensors for LINC01090 (Homo sapiens)

Ensembl gene IDs: ENSG00000231689

Ensembl transcript IDs: ENST00000434418.2, ENST00000632331.1

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GAGATGTTCCTTGGGCTGGTGGGTCTGAGGACCCAAGGTCATAGGTaGATTGCCTCACGGAGTGATGACGAGGACAGGGTACCAGTCTCC	+
Preference number: 5 (lower is better) Translates to: EMFLGLVGLRTQGHR*IASRSDDEDRVPVS Trigger: GGAGACTGGTACCCTGTCCTCGTCATCACTCCGTGAGGCAATCCACCTATGACCTTGGGTCCTCAGACCCACCAGCCCAAGGAACATCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434418.2 ENST00000632331.1
CDS TCA 90 bp	AAGCCCGATATGAAATTGGTGAGATGTTCCTTGGGCTGGTGGGTCTaGGGACCCAAGGTCATAGGTGGATTGCCTCACGGAGTGATGACG	+
Preference number: 5 (lower is better) Translates to: KPDMKLVRCSLGWWV*GPKVIGGLPHGVMT Trigger: CGTCATCACTCCGTGAGGCAATCCACCTATGACCTTGGGTCCTCAGACCCACCAGCCCAAGGAACATCTCACCAATTTCATATCGGGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434418.2
CDS TCA 90 bp	TGGATTGCCTCACGGAGTGATGACGAGGACAGGGTACCAGTCTCCTaGAGGAGTCTTCCTGTCCAGGTTTTGGCACCAAATGTCATGTGT	+
Preference number: 5 (lower is better) Translates to: WIASRSDDEDRVPVS*RSLPVQVLAPNVMC Trigger: ACACATGACATTTGGTGCCAAAACCTGGACAGGAAGACTCCTTCAGGAGACTGGTACCCTGTCCTCGTCATCACTCCGTGAGGCAATCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434418.2 ENST00000632331.1
CDS TCA 90 bp	ATAACCGATATGAAATTGGTGAGATGTTCCTTGGGCTGGTGGGTCTaGGGACCCAAGGTCATAGGTGGATTGCCTCACGGAGTGATGACG	+
Preference number: 5 (lower is better) Translates to: ITDMKLVRCSLGWWV*GPKVIGGLPHGVMT Trigger: CGTCATCACTCCGTGAGGCAATCCACCTATGACCTTGGGTCCTCAGACCCACCAGCCCAAGGAACATCTCACCAATTTCATATCGGTTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000632331.1
CDS CCA 90 bp	AACCATAGAATTCTAGACTTTCTTTTGAGAGAAGTCTTCTCATTCTaGCAGCCGCTTCCAGATCCCCTGGAACTCTGGCCCAAGGCTCTC	+
Preference number: 5 (lower is better) Translates to: NHRILDFLLREVFSF*QPLPDPLELWPKAL Trigger: GAGAGCCTTGGGCCAGAGTTCCAGGGGATCTGGAAGCGGCTGCCAGAATGAGAAGACTTCTCTCAAAAGAAAGTCTAGAATTCTATGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000434418.2
CDS TCA 72 bp	ATGAAATTGGTGAGATGTTCCTTGGGCTGGTGGGTCTaGGGACCCAAGGTCATAGGTGGATTGCCTCACGGA	+
Preference number: 6 (lower is better) Translates to: MKLVRCSLGWWV*GPKVIGGLPHG Trigger: TCCGTGAGGCAATCCACCTATGACCTTGGGTCCTCAGACCCACCAGCCCAAGGAACATCTCACCAATTTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000434418.2 ENST00000632331.1

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