Pregenerated sensors for LINC01089 (Homo sapiens)
Ensembl gene IDs: ENSG00000212694Ensembl transcript IDs: ENST00000428029.6, ENST00000429892.5, ENST00000535614.5, ENST00000535643.5, ENST00000536662.5, ENST00000537157.5, ENST00000538335.1, ENST00000541694.5, ENST00000542933.5, ENST00000543167.5, ENST00000543334.5, ENST00000545885.5
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGCCCCGCGCGCCCGCCTCCGGCCCGGGCAGTTTGGAAACAGTTTTaGAGGCCCGGGACGCACGCCGCGGCGGTCGCGGCTCTGAGGGTA | + |
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Preference number: 5 (lower is better) Translates to: GPARPPPARAVWKQF*RPGTHAAAVAALRV Trigger: TACCCTCAGAGCCGCGACCGCCGCGGCGTGCGTCCCGGGCCTGCAAAACTGTTTCCAAACTGCCCGGGCCGGAGGCGGGCGCGCGGGGCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000538335.1 |
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| CDS CCA 90 bp | GAAGGAAAGAGAGCCGCCGCCATTAGCAAAGCAGCCCTGCCCGGCTaGGCCCGCCTGCCAGACCAGCCCGGCCCAGCCGCGACGGGCTCG | + |
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Preference number: 5 (lower is better) Translates to: EGKRAAAISKAALPG*ARLPDQPGPAATGS Trigger: CGAGCCCGTCGCGGCTGGGCCGGGCTGGTCTGGCAGGCGGGCCCAGCCGGGCAGGGCTGCTTTGCTAATGGCGGCGGCTCTCTTTCCTTC 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000537157.5 |
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| CDS GCA 90 bp | GCGGCTCCTGCGCCTCGGCCGCCAGAGAGGAGCGGCAGAGGGGGCTaGAAACGCGTCCTCGCGAAGCCCGGGAGCCTCGGAGTTGAACTC | + |
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Preference number: 5 (lower is better) Translates to: AAPAPRPPERSGRGG*KRVLAKPGSLGVEL Trigger: GAGTTCAACTCCGAGGCTCCCGGGCTTCGCGAGGACGCGTTTGCAGCCCCCTCTGCCGCTCCTCTCTGGCGGCCGAGGCGCAGGAGCCGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000429892.5 |
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| CDS GCA 90 bp | GGAGGAAGGAAGGAAAGAGAGCCGCCGCCATTAGCAAAGCAGCCCTaGCCGGCTGGGCCCGCCTGCCAGACCAGCCCGGCCCAGCCGCGA | + |
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Preference number: 5 (lower is better) Translates to: GGRKEREPPPLAKQP*PAGPACQTSPAQPR Trigger: TCGCGGCTGGGCCGGGCTGGTCTGGCAGGCGGGCCCAGCCGGGCAGGGCTGCTTTGCTAATGGCGGCGGCTCTCTTTCCTTCCTTCCTCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000537157.5 |
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| CDS CCA 90 bp | GCCCAGAACCTGGGAAGAGCGAGGGGGCGAAGGCAGGCGGCTCCATaGACCCCCGAGGGTCGCTGCGAAGCCCGTCTTCTCGCCCTTGGG | + |
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Preference number: 5 (lower is better) Translates to: AQNLGRARGRRQAAP*TPEGRCEARLLALG Trigger: CCCAAGGGCGAGAAGACGGGCTTCGCAGCGACCCTCGGGGGTCCATGGAGCCGCCTGCCTTCGCCCCCTCGCTCTTCCCAGGTTCTGGGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000535614.5 |
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| CDS CCA 90 bp | AAATACCTCGGAGCCAAGCCAGCTGCTCAGAGCTTCCTCGGAGGCTaGGCCGCGCTGGGCCCACTGAGGAACTGGGCATGCCCACCCAGG | + |
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Preference number: 5 (lower is better) Translates to: KYLGAKPAAQSFLGG*AALGPLRNWACPPR Trigger: CCTGGGTGGGCATGCCCAGTTCCTCAGTGGGCCCAGCGCGGCCCAGCCTCCGAGGAAGCTCTGAGCAGCTGGCTTGGCTCCGAGGTATTT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000428029.6 ENST00000541694.5 ENST00000542933.5 ENST00000543167.5 |
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| CDS CCA 90 bp | TCCATGGACCCCCGAGGGTCGCTGCGAAGCCCGTCTTCTCGCCCTTaGGGCAGAAGAGGCACAGGGGTCCGAAGAGCCCTTCGTGTCCCA | + |
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Preference number: 5 (lower is better) Translates to: SMDPRGSLRSPSSRP*GRRGTGVRRALRVP Trigger: TGGGACACGAAGGGCTCTTCGGACCCCTGTGCCTCTTCTGCCCCAAGGGCGAGAAGACGGGCTTCGCAGCGACCCTCGGGGGTCCATGGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000535614.5 |
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| CDS TCA 90 bp | GCAGTGCAATGGAGGTTGGAAGCAGGGGAACCCTTTACTGAAGGCTaGGCGCTGGCTGGCACACTAGGCCTGGCAGCACTGGAGGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: AVQWRLEAGEPFTEG*ALAGTLGLAALEGR Trigger: CCTGCCCTCCAGTGCTGCCAGGCCTAGTGTGCCAGCCAGCGCTCAGCCTTCAGTAAAGGGTTCCCCTGCTTCCAACCTCCATTGCACTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429892.5 ENST00000542933.5 |
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| CDS TCA 90 bp | AGGGGAAGCAGTGCAATGGAGGTTGGAAGCAGGGGAACCCTTTACTaGAGGCTGAGCGCTGGCTGGCACACTAGGCCTGGCAGCACTGGA | + |
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Preference number: 5 (lower is better) Translates to: RGSSAMEVGSRGTLY*RLSAGWHTRPGSTG Trigger: TCCAGTGCTGCCAGGCCTAGTGTGCCAGCCAGCGCTCAGCCTTCAGTAAAGGGTTCCCCTGCTTCCAACCTCCATTGCACTGCTTCCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000429892.5 ENST00000542933.5 |
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| CDS TCA 90 bp | CTGGGCATGCCCACCCAGGAGGTAGCTCCCTTACCTGCTAGAGGTTaGGGGCCTGAGTCACTCCCCCTTCCAGTCACCAGGAATTCCTTA | + |
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Preference number: 5 (lower is better) Translates to: LGMPTQEVAPLPARG*GPESLPLPVTRNSL Trigger: TAAGGAATTCCTGGTGACTGGAAGGGGGAGTGACTCAGGCCCTCAACCTCTAGCAGGTAAGGGAGCTACCTCCTGGGTGGGCATGCCCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000428029.6 ENST00000541694.5 ENST00000542933.5 ENST00000543167.5 |
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| CDS CCA 90 bp | CACCCTCACGTTCTGCTCCTTCCACTTCTGCAAACTTTCCAGGGTTaGGTAGGCAAAAAGGCGGCTTCGCTGAGGACTGTTTACTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: HPHVLLLPLLQTFQG*VGKKAASLRTVYCS Trigger: AGAGCAGTAAACAGTCCTCAGCGAAGCCGCCTTTTTGCCTACCCAACCCTGGAAAGTTTGCAGAAGTGGAAGGAGCAGAACGTGAGGGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000543167.5 ENST00000543334.5 |
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| CDS CCA 90 bp | CACCCTCACGTTCTGCTCCTTCCACTTCTGCAAACTTTCCAGGGTTaGGTAGGCAAAAAGGCGGCTTCGCTGAGGACTGTTTACTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: HPHVLLLPLLQTFQG*VGKKAASLRTVYCF Trigger: AAAGCAGTAAACAGTCCTCAGCGAAGCCGCCTTTTTGCCTACCCAACCCTGGAAAGTTTGCAGAAGTGGAAGGAGCAGAACGTGAGGGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENST00000428029.6 ENST00000429892.5 ENST00000535643.5 ENST00000536662.5 ENST00000541694.5 ENST00000542933.5 ENST00000545885.5 |
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| CDS TCA 90 bp | TGTCCACTTTCTCCATCCAAGAAATGGGGCTGTGATCTCTGCTTATaGCAGCACAAGCTTGCACAGAAGTGGAGGCGGGAAATAAGCACA | + |
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Preference number: 5 (lower is better) Translates to: CPLSPSKKWGCDLCL*QHKLAQKWRREIST Trigger: TGTGCTTATTTCCCGCCTCCACTTCTGTGCAAGCTTGTGCTGTCATAAGCAGAGATCACAGCCCCATTTCTTGGATGGAGAAAGTGGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000428029.6 ENST00000542933.5 |
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| CDS GCA 90 bp | CAGGGTTGGGTAGGCAAAAAGGCGGCTTCGCTGAGGACTGTTTACTaGTCTGGATATAGCAATGGTGTGATCGTCATTAAGAGACAAAAG | + |
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Preference number: 5 (lower is better) Translates to: QGWVGKKAASLRTVY*SGYSNGVIVIKRQK Trigger: CTTTTGTCTCTTAATGACGATCACACCATTGCTATATCCAGAGCAGTAAACAGTCCTCAGCGAAGCCGCCTTTTTGCCTACCCAACCCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000543167.5 ENST00000543334.5 |
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| CDS CCA 90 bp | ACTGTGAGTCCTTGGGCTTGGCCATTTAATTCCATTGCAGAAAAATaGCTTCCCTCATCTGTTGGCCTCTCCTTCGTGTCTGATGAAGGA | + |
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Preference number: 5 (lower is better) Translates to: TVSPWAWPFNSIAEK*LPSSVGLSFVSDEG Trigger: TCCTTCATCAGACACGAAGGAGAGGCCAACAGATGAGGGAAGCCATTTTTCTGCAATGGAATTAAATGGCCAAGCCCAAGGACTCACAGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000429892.5 |
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| CDS CAA 90 bp | GGGCCCCGCGCGCCCGCCTCCGGCCCGGGCAGTTTGGAAACAGTTTaGCAGGCCCGGGACGCACGCCGCGGCGGTCGCGGCTCTGAGGGT | + |
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Preference number: 6 (lower is better) Translates to: GPRAPASGPGSLETV*QARDARRGGRGSEG Trigger: ACCCTCAGAGCCGCGACCGCCGCGGCGTGCGTCCCGGGCCTGCAAAACTGTTTCCAAACTGCCCGGGCCGGAGGCGGGCGCGCGGGGCCC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000538335.1 |
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| CDS CAA 72 bp | GCGCCCGCCTCCGGCCCGGGCAGTTTGGAAACAGTTTaGCAGGCCCGGGACGCACGCCGCGGCGGTCGCGGC | + |
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Preference number: 6 (lower is better) Translates to: APASGPGSLETV*QARDARRGGRG Trigger: GCCGCGACCGCCGCGGCGTGCGTCCCGGGCCTGCAAAACTGTTTCCAAACTGCCCGGGCCGGAGGCGGGCGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000538335.1 |
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| CDS GCA 72 bp | CCATTAGCAAAGCAGCCCTGCCCGGCTGGGCCCGCCTaGCAGACCAGCCCGGCCCAGCCGCGACGGGCTCGA | + |
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Preference number: 6 (lower is better) Translates to: PLAKQPCPAGPA*QTSPAQPRRAR Trigger: TCGAGCCCGTCGCGGCTGGGCCGGGCTGGTCTGGCAGGCGGGCCCAGCCGGGCAGGGCTGCTTTGCTAATGG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000537157.5 |
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| CDS GCA 72 bp | CGCCCGCCTCCGGCCCGGGCAGTTTGGAAACAGTTTTaGAGGCCCGGGACGCACGCCGCGGCGGTCGCGGCT | + |
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Preference number: 6 (lower is better) Translates to: RPPPARAVWKQF*RPGTHAAAVAA Trigger: AGCCGCGACCGCCGCGGCGTGCGTCCCGGGCCTGCAAAACTGTTTCCAAACTGCCCGGGCCGGAGGCGGGCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000538335.1 |
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| CDS GCA 72 bp | AAGGAAAGAGAGCCGCCGCCATTAGCAAAGCAGCCCTaGCCGGCTGGGCCCGCCTGCCAGACCAGCCCGGCC | + |
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Preference number: 6 (lower is better) Translates to: KEREPPPLAKQP*PAGPACQTSPA Trigger: GGCCGGGCTGGTCTGGCAGGCGGGCCCAGCCGGGCAGGGCTGCTTTGCTAATGGCGGCGGCTCTCTTTCCTT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000537157.5 |
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| CDS CCA 72 bp | CTGGGAAGAGCGAGGGGGCGAAGGCAGGCGGCTCCATaGACCCCCGAGGGTCGCTGCGAAGCCCGTCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: LGRARGRRQAAP*TPEGRCEARLL Trigger: GAGAAGACGGGCTTCGCAGCGACCCTCGGGGGTCCATGGAGCCGCCTGCCTTCGCCCCCTCGCTCTTCCCAG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000535614.5 |
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| CDS GCA 72 bp | CGAAGGCAGGCGGCTCCATGGACCCCCGAGGGTCGCTaGGAAGCCCGTCTTCTCGCCCTTGGGGCAGAAGAG | + |
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Preference number: 6 (lower is better) Translates to: RRQAAPWTPEGR*EARLLALGAEE Trigger: CTCTTCTGCCCCAAGGGCGAGAAGACGGGCTTCGCAGCGACCCTCGGGGGTCCATGGAGCCGCCTGCCTTCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000535614.5 |
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| CDS CCA 72 bp | CCCCGAGGGTCGCTGCGAAGCCCGTCTTCTCGCCCTTaGGGCAGAAGAGGCACAGGGGTCCGAAGAGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: PRGSLRSPSSRP*GRRGTGVRRAL Trigger: AAGGGCTCTTCGGACCCCTGTGCCTCTTCTGCCCCAAGGGCGAGAAGACGGGCTTCGCAGCGACCCTCGGGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000535614.5 |
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| CDS CAA 90 bp | GAGGCCAGGCAGGGCTGTCAAGGTAACCGGGGTCAGATCATGGAGTaGCCTGCCAGGCTCCACAGGAGTGGGGGACAGAAGCAGAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: EARQGCQGNRGQIME*PARLHRSGGQKQSN Trigger: GTTGCTCTGCTTCTGTCCCCCACTCCTGTGGAGCCTGGCAGGCAACTCCATGATCTGACCCCGGTTACCTTGACAGCCCTGCCTGGCCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000429892.5 ENST00000542933.5 |
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| CDS TCA 72 bp | TGGAGGTTGGAAGCAGGGGAACCCTTTACTGAAGGCTaGGCGCTGGCTGGCACACTAGGCCTGGCAGCACTG | + |
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Preference number: 6 (lower is better) Translates to: WRLEAGEPFTEG*ALAGTLGLAAL Trigger: CAGTGCTGCCAGGCCTAGTGTGCCAGCCAGCGCTCAGCCTTCAGTAAAGGGTTCCCCTGCTTCCAACCTCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429892.5 ENST00000542933.5 |
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| CDS CAA 72 bp | CAGGGCTGTCAAGGTAACCGGGGTCAGATCATGGAGTaGCCTGCCAGGCTCCACAGGAGTGGGGGACAGAAG | + |
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Preference number: 6 (lower is better) Translates to: QGCQGNRGQIME*PARLHRSGGQK Trigger: CTTCTGTCCCCCACTCCTGTGGAGCCTGGCAGGCAACTCCATGATCTGACCCCGGTTACCTTGACAGCCCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000429892.5 ENST00000542933.5 |
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| CDS TCA 72 bp | AGTGCAATGGAGGTTGGAAGCAGGGGAACCCTTTACTaGAGGCTGAGCGCTGGCTGGCACACTAGGCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: SAMEVGSRGTLY*RLSAGWHTRPG Trigger: GCCAGGCCTAGTGTGCCAGCCAGCGCTCAGCCTTCAGTAAAGGGTTCCCCTGCTTCCAACCTCCATTGCACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429892.5 ENST00000542933.5 |
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| CDS GCA 72 bp | GCAGGGAAAGTAGGGTGGGTAACCCAGCCTGGCAAATaGACGGCAGCTAGAAAACCTCTTCAGGTTCTGGGG | + |
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Preference number: 6 (lower is better) Translates to: AGKVGWVTQPGK*TAARKPLQVLG Trigger: CCCCAGAACCTGAAGAGGTTTTCTAGCTGCCGTGCATTTGCCAGGCTGGGTTACCCACCCTACTTTCCCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000429892.5 ENST00000542933.5 |
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| CDS CCA 72 bp | CCTTCTCCGGCCCAGAACCCGCTCAGCCCGGTGCCATaGAGTCTAGAAGATCAAGCTTTTTGTAAGTTACAC | + |
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Preference number: 6 (lower is better) Translates to: PSPAQNPLSPVP*SLEDQAFCKLH Trigger: GTGTAACTTACAAAAAGCTTGATCTTCTAGACTCCATGGCACCGGGCTGAGCGGGTTCTGGGCCGGAGAAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000429892.5 |
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| CDS CCA 72 bp | TTCCAGGAGGTCACAGTCTTAGGGGAAGCAGTGCAATaGAGGTTGGAAGCAGGGGAACCCTTTACTGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: FQEVTVLGEAVQ*RLEAGEPFTEG Trigger: GCCTTCAGTAAAGGGTTCCCCTGCTTCCAACCTCCATTGCACTGCTTCCCCTAAGACTGTGACCTCCTGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000429892.5 ENST00000542933.5 |
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| CDS CAA 90 bp | ACACCCTCACGTTCTGCTCCTTCCACTTCTGCAAACTTTCCAGGGTaGGGTAGGCAAAAAGGCGGCTTCGCTGAGGACTGTTTACTGCTA | + |
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Preference number: 6 (lower is better) Translates to: TPSRSAPSTSANFPG*GRQKGGFAEDCLLL Trigger: TAGCAGTAAACAGTCCTCAGCGAAGCCGCCTTTTTGCCTACCCAACCCTGGAAAGTTTGCAGAAGTGGAAGGAGCAGAACGTGAGGGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000538335.1 |
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| CDS TCA 72 bp | GCTATATTCGGCAGAGACTTACACGCCCCAAATGCCTaGCAACAGAAGCTTAGTGGGAGGACTGTCAGAGTC | + |
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Preference number: 6 (lower is better) Translates to: AIFGRDLHAPNA*QQKLSGRTVRV Trigger: GACTCTGACAGTCCTCCCACTAAGCTTCTGTTGTCAGGCATTTGGGGCGTGTAAGTCTCTGCCGAATATAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000535614.5 ENST00000535643.5 ENST00000536662.5 ENST00000543334.5 |
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| CDS GCA 72 bp | GCCCAGAACCTTTTTGTAAGTTACACCCTCACGTTCTaGTCCTTCCACTTCTGCAAACTTTCCAGGGTTGGG | + |
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Preference number: 6 (lower is better) Translates to: AQNLFVSYTLTF*SFHFCKLSRVG Trigger: CCCAACCCTGGAAAGTTTGCAGAAGTGGAAGGAGCAGAACGTGAGGGTGTAACTTACAAAAAGGTTCTGGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 9 transcripts: ENST00000428029.6 ENST00000535643.5 ENST00000536662.5 ENST00000538335.1 ENST00000541694.5 ENST00000542933.5 ENST00000543167.5 ENST00000543334.5 ENST00000545885.5 |
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| CDS TCA 72 bp | TTCTCCAGTCTTCCAACTGTGAGTCCTTGGGCCTGTTaGCAAATGTTAAACACACTGAGACGTCCTGAACTG | + |
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Preference number: 6 (lower is better) Translates to: FSSLPTVSPWAC*QMLNTLRRPEL Trigger: CAGTTCAGGACGTCTCAGTGTGTTTAACATTTGTCAACAGGCCCAAGGACTCACAGTTGGAAGACTGGAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000535643.5 ENST00000541694.5 ENST00000545885.5 |
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| CDS GCA 72 bp | GTAGGCAAAAAGGCGGCTTCGCTGAGGACTGTTTACTaGTCTGGATATAGCAATGGTGTGATCGTCATTAAG | + |
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Preference number: 6 (lower is better) Translates to: VGKKAASLRTVY*SGYSNGVIVIK Trigger: CTTAATGACGATCACACCATTGCTATATCCAGAGCAGTAAACAGTCCTCAGCGAAGCCGCCTTTTTGCCTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000543167.5 ENST00000543334.5 |
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| CDS CAA 90 bp | CTTGGCCATTTAATTCCATTGCAGAAAAATGGCTTCCCTCATCTGTaGGCCTCTCCTTCGTGTCTGATGAAGGATGTTTTGAGATCAGCG | + |
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Preference number: 6 (lower is better) Translates to: LGHLIPLQKNGFPHL*ASPSCLMKDVLRSA Trigger: CGCTGATCTCAAAACATCCTTCATCAGACACGAAGGAGAGGCCAACAGATGAGGGAAGCCATTTTTCTGCAATGGAATTAAATGGCCAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000429892.5 |
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| CDS GCA 72 bp | AAGATCAAGCTTTTTGTAAGTTACACCCTCACGTTCTaGTCCTTCCACTTCTGCAAACTTTCCAGGGTTGGG | + |
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Preference number: 6 (lower is better) Translates to: KIKLFVSYTLTF*SFHFCKLSRVG Trigger: CCCAACCCTGGAAAGTTTGCAGAAGTGGAAGGAGCAGAACGTGAGGGTGTAACTTACAAAAAGCTTGATCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000429892.5 |
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| CDS CAA 72 bp | CTTCTCCAGTCTTCCAACTGTGAGTCCTTGGGCCTGTaGACAAATGTTAAACACATTGGCCATTTAATTCCA | + |
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Preference number: 6 (lower is better) Translates to: LLQSSNCESLGL*TNVKHIGHLIP Trigger: TGGAATTAAATGGCCAATGTGTTTAACATTTGTCAACAGGCCCAAGGACTCACAGTTGGAAGACTGGAGAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000536662.5 |
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| CDS CAA 72 bp | TTAAAAAGTCTTCTCCAGTCTTCCAACTGTGAGTCCTaGGGCCTGTTGACAAATGTTAAACACACTGAGACG | + |
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Preference number: 6 (lower is better) Translates to: LKSLLQSSNCES*GLLTNVKHTET Trigger: CGTCTCAGTGTGTTTAACATTTGTCAACAGGCCCAAGGACTCACAGTTGGAAGACTGGAGAAGACTTTTTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000535643.5 ENST00000541694.5 ENST00000545885.5 |
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| CDS CAA 72 bp | TTAAAAAGTCTTCTCCAGTCTTCCAACTGTGAGTCCTaGGGCCTGTTGACAAATGTTAAACACATTGGCCAT | + |
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Preference number: 6 (lower is better) Translates to: LKSLLQSSNCES*GLLTNVKHIGH Trigger: ATGGCCAATGTGTTTAACATTTGTCAACAGGCCCAAGGACTCACAGTTGGAAGACTGGAGAAGACTTTTTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000536662.5 |
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| CDS GCA 72 bp | AAGGACATCTCAGCAACATTAACATCAAAACTGTACTaGGTCAGGACAGAATGGATTGGGTACTTACAATGT | + |
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Preference number: 6 (lower is better) Translates to: KDISATLTSKLY*VRTEWIGYLQC Trigger: ACATTGTAAGTACCCAATCCATTCTGTCCTGACGCAGTACAGTTTTGATGTTAATGTTGCTGAGATGTCCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000543167.5 ENST00000543334.5 |
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| CDS CAA 90 bp | CAGATCTTTTTAAAAAGTCTTCTCCAGTCTTCCAACTGTGAGTCCTaGGGCCTGTTGACAAATGTTAAACACATTGGCCATTTAATTCCA | + |
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Preference number: 6 (lower is better) Translates to: QIFLKSLLQSSNCES*GLLTNVKHIGHLIP Trigger: TGGAATTAAATGGCCAATGTGTTTAACATTTGTCAACAGGCCCAAGGACTCACAGTTGGAAGACTGGAGAAGACTTTTTAAAAAGATCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000536662.5 |
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