Pregenerated sensors for LINC01087 (Homo sapiens)
Ensembl gene IDs: ENSG00000224559Ensembl transcript IDs: ENST00000431979.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCAAAAGGATGGCTTGGACTCAGAGTTCAGGGCTGTGGTGAATTATaGTCAAACCACTGCACTTCTGCCTCGATGACAAAGACCGTATCT | + |
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Preference number: 5 (lower is better) Translates to: AKGWLGLRVQGCGEL*SNHCTSASMTKTVS Trigger: AGATACGGTCTTTGTCATCGAGGCAGAAGTGCAGTGGTTTGATCATAATTCACCACAGCCCTGAACTCTGAGTCCAAGCCATCCTTTTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431979.1 |
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| CDS CCA 90 bp | GTAAATGGGCTAAATGCCCCAGTTAAAAGACACAGACTGGCAAGTTaGATAAAGAGTAAAGACCCAATGGTGTCCTGTATTCAGGAGACC | + |
|
Preference number: 5 (lower is better) Translates to: VNGLNAPVKRHRLAS*IKSKDPMVSCIQET Trigger: GGTCTCCTGAATACAGGACACCATTGGGTCTTTACTCTTTATCCAACTTGCCAGTCTGTGTCTTTTAACTGGGGCATTTAGCCCATTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431979.1 |
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| CDS CCA 90 bp | ATGATGTGCTTATTTCACATTGCATGCCTGTATCAAAACATCTCATaGACCCCACATACTATGTACCCACAACACATACGATGTACCCAC | + |
|
Preference number: 5 (lower is better) Translates to: MMCLFHIACLYQNIS*TPHTMYPQHIRCTH Trigger: GTGGGTACATCGTATGTGTTGTGGGTACATAGTATGTGGGGTCCATGAGATGTTTTGATACAGGCATGCAATGTGAAATAAGCACATCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431979.1 |
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| CDS TCA 72 bp | AAAAGGATGGCTTGGACTCAGAGTTCAGGGCTGTGGTaGATTATGATCAAACCACTGCACTTCTGCCTCGAT | + |
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Preference number: 6 (lower is better) Translates to: KRMAWTQSSGLW*IMIKPLHFCLD Trigger: ATCGAGGCAGAAGTGCAGTGGTTTGATCATAATTCACCACAGCCCTGAACTCTGAGTCCAAGCCATCCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431979.1 |
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| CDS CCA 72 bp | TTATTTCACATTGCATGCCTGTATCAAAACATCTCATaGACCCCACATACTATGTACCCACAACACATACGA | + |
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Preference number: 6 (lower is better) Translates to: LFHIACLYQNIS*TPHTMYPQHIR Trigger: TCGTATGTGTTGTGGGTACATAGTATGTGGGGTCCATGAGATGTTTTGATACAGGCATGCAATGTGAAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431979.1 |
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