Pregenerated sensors for LINC01082 (Homo sapiens)
Ensembl gene IDs: ENSG00000269186Ensembl transcript IDs: ENST00000601250.1, ENST00000650200.1, ENST00000654153.1, ENST00000669926.1
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTGGCCCAAAGCAGGCTCCTGTCCTGTGATTCCACAAAGGAAGGCTaGGTGACCATGTTAGCCAAGCTCCCCGGTGCCCTGTCCGTGTTG | + |
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Preference number: 5 (lower is better) Translates to: LAQSRLLSCDSTKEG*VTMLAKLPGALSVL Trigger: CAACACGGACAGGGCACCGGGGAGCTTGGCTAACATGGTCACTCAGCCTTCCTTTGTGGAATCACAGGACAGGAGCCTGCTTTGGGCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS TCA 90 bp | CTGTGTGCCTCGATAGAGTCCGAAGAAAAACATTCCTCGCATTCCTaGCGGTTGGTCCTATCTCCGGGCCTTGGACTCGGCCCTGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: LCASIESEEKHSSHS*RLVLSPGLGLGPAG Trigger: GCCTGCAGGGCCGAGTCCAAGGCCCGGAGATAGGACCAACCGTCAGGAATGCGAGGAATGTTTTTCTTCGGACTCTATCGAGGCACACAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000601250.1 ENST00000669926.1 |
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| CDS GCA 90 bp | TCTCTCATGGATCCTCTCATCAGATCAGTTCCTCCCGGCAGTCTCTaGCCTCCGAGCTTTGGTGGCCGTGTGGATGCTAAGCCGGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: SLMDPLIRSVPPGSL*PPSFGGRVDAKPGF Trigger: AAAGCCCGGCTTAGCATCCACACGGCCACCAAAGCTCGGAGGGCAGAGACTGCCGGGAGGAACTGATCTGATGAGAGGATCCATGAGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS GCA 90 bp | GGGAAGCATCTCGGCTCTGAGCTGACGCGGCGATTGCAGTGGGTTTaGAGACTGCAGCGTTTTTCTATTCATCAGGGTCCAGGGGCCAAA | + |
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Preference number: 5 (lower is better) Translates to: GKHLGSELTRRLQWV*RLQRFSIHQGPGAK Trigger: TTTGGCCCCTGGACCCTGATGAATAGAAAAACGCTGCAGTCTGCAAACCCACTGCAATCGCCGCGTCAGCTCAGAGCCGAGATGCTTCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS TCA 90 bp | CCCGCCTGCAGCCTGCGTCCTGGCCTGAAGTGTTTACTGTCAGGGTaGTTTACACCATCCAGGTGTTCATTTGGGAAGCATCTCGGCTCT | + |
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Preference number: 5 (lower is better) Translates to: PACSLRPGLKCLLSG*FTPSRCSFGKHLGS Trigger: AGAGCCGAGATGCTTCCCAAATGAACACCTGGATGGTGTAAATCACCCTGACAGTAAACACTTCAGGCCAGGACGCAGGCTGCAGGCGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS GCA 90 bp | GTGCCCTGTCCGTGTTGGAGAAATGGGCACTTAGTGCAGTTGCCCTaGTCTCTCATGGATCCTCTCATCAGATCAGTTCCTCCCGGCAGT | + |
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Preference number: 5 (lower is better) Translates to: VPCPCWRNGHLVQLP*SLMDPLIRSVPPGS Trigger: ACTGCCGGGAGGAACTGATCTGATGAGAGGATCCATGAGAGAGCAGGGCAACTGCACTAAGTGCCCATTTCTCCAACACGGACAGGGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS CCA 90 bp | TCATTTGGGAAGCATCTCGGCTCTGAGCTGACGCGGCGATTGCAGTaGGTTTGCAGACTGCAGCGTTTTTCTATTCATCAGGGTCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: SFGKHLGSELTRRLQ*VCRLQRFSIHQGPG Trigger: CCCTGGACCCTGATGAATAGAAAAACGCTGCAGTCTGCAAACCCACTGCAATCGCCGCGTCAGCTCAGAGCCGAGATGCTTCCCAAATGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS CCA 90 bp | CTTCTGGTTGTTTTTCTTCGGTGCTGGGTTGATCCTGGGGCCGAGTaGCTGCTCTCGAGTTCCCTACATTTCTCGAGTCTGTGCTGTGAG | + |
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Preference number: 5 (lower is better) Translates to: LLVVFLRCWVDPGAE*LLSSSLHFSSLCCE Trigger: CTCACAGCACAGACTCGAGAAATGTAGGGAACTCGAGAGCAGCCACTCGGCCCCAGGATCAACCCAGCACCGAAGAAAAACAACCAGAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000654153.1 |
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| CDS TCA 90 bp | GTGATTTACACCATCCAGGTGTTCATTTGGGAAGCATCTCGGCTCTaGGCTGACGCGGCGATTGCAGTGGGTTTGCAGACTGCAGCGTTT | + |
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Preference number: 5 (lower is better) Translates to: VIYTIQVFIWEASRL*ADAAIAVGLQTAAF Trigger: AAACGCTGCAGTCTGCAAACCCACTGCAATCGCCGCGTCAGCTCAGAGCCGAGATGCTTCCCAAATGAACACCTGGATGGTGTAAATCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS TCA 90 bp | CCCCTCTCGAGGTATCATAAAGCCATTCATAACGGCATAAACGCCTaGCAACACTCCCTGATGCCAGCCCGGGGTAAGTCGGACAGTGAT | + |
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Preference number: 5 (lower is better) Translates to: PLSRYHKAIHNGINA*QHSLMPARGKSDSD Trigger: ATCACTGTCCGACTTACCCCGGGCTGGCATCAGGGAGTGTTGTCAGGCGTTTATGCCGTTATGAATGGCTTTATGATACCTCGAGAGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS CCA 90 bp | CTTCTGGTTGTTTTTCTTCGGTGCTGGGTTGATCCTGGGGCCGAGTaGCTGCTCTCGAGTTCCCTACATTTCTCGAGTCTGTGCTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: LLVVFLRCWVDPGAE*LLSSSLHFSSLCFS Trigger: TGAGAAGCACAGACTCGAGAAATGTAGGGAACTCGAGAGCAGCCACTCGGCCCCAGGATCAACCCAGCACCGAAGAAAAACAACCAGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000601250.1 ENST00000669926.1 |
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| CDS CCA 90 bp | CTTCTGGTTGTTTTTCTTCGGTGCTGGGTTGATCCTGGGGCCGAGTaGCTGCTCTCGAGTTCCCTACATTTCTCGAGTCTGTGCTTAGGA | + |
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Preference number: 5 (lower is better) Translates to: LLVVFLRCWVDPGAE*LLSSSLHFSSLCLG Trigger: TCCTAAGCACAGACTCGAGAAATGTAGGGAACTCGAGAGCAGCCACTCGGCCCCAGGATCAACCCAGCACCGAAGAAAAACAACCAGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS TCA 90 bp | TTACACCATCCAGGTGTTCATTTGGGAAGCATCTCGGCTCTGAGCTaGCGCGGCGATTGCAGTGGGTTTGCAGACTGCAGCGTTTTTCTA | + |
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Preference number: 5 (lower is better) Translates to: LHHPGVHLGSISALS*RGDCSGFADCSVFL Trigger: TAGAAAAACGCTGCAGTCTGCAAACCCACTGCAATCGCCGCGTCAGCTCAGAGCCGAGATGCTTCCCAAATGAACACCTGGATGGTGTAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS TCA 90 bp | CGAGTGGCTGCTCTCGAGTTCCCTACATTTCTCGAGTCTGTGCTGTaGGTGGAAAGAAACAGAGCCATAAAAAGCCTCTCCCAAAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: RVAALEFPTFLESVL*VERNRAIKSLSQSC Trigger: GCAGCTTTGGGAGAGGCTTTTTATGGCTCTGTTTCTTTCCACTCACAGCACAGACTCGAGAAATGTAGGGAACTCGAGAGCAGCCACTCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654153.1 |
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| CDS TCA 90 bp | CCCTGCGGCAGGGTGAAAACTGGGACCAATTTGCTGCCTAAACCCTaGGGATACAGCAAGTTTGATTCTCGACCTTTAAGGACACCAGCT | + |
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Preference number: 5 (lower is better) Translates to: PCGRVKTGTNLLPKP*GYSKFDSRPLRTPA Trigger: AGCTGGTGTCCTTAAAGGTCGAGAATCAAACTTGCTGTATCCTCAGGGTTTAGGCAGCAAATTGGTCCCAGTTTTCACCCTGCCGCAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669926.1 |
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| CDS TCA 90 bp | AAGACAGTTTTTGTAAATGCTGGCCCAAAGCAGGCTCCTGTCCTGTaGTTCCACAAAGGAAGGCTGAGTGACCATGTTAGCCAAGCTCCC | + |
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Preference number: 5 (lower is better) Translates to: KTVFVNAGPKQAPVL*FHKGRLSDHVSQAP Trigger: GGGAGCTTGGCTAACATGGTCACTCAGCCTTCCTTTGTGGAATCACAGGACAGGAGCCTGCTTTGGGCCAGCATTTACAAAAACTGTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS GCA 90 bp | GCCATAAAAAGCCTCTCCCAAAGCTGCTGCATAACGTTTACATTGTaGGTCCTCACATCTGTCTGGCTTAGGAACATTTCAGATAGATCT | + |
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Preference number: 5 (lower is better) Translates to: AIKSLSQSCCITFTL*VLTSVWLRNISDRS Trigger: AGATCTATCTGAAATGTTCCTAAGCCAGACAGATGTGAGGACGCACAATGTAAACGTTATGCAGCAGCTTTGGGAGAGGCTTTTTATGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654153.1 |
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| CDS CAA 72 bp | CCTCGCATTCCTGACGGTTGGTCCTATCTCCGGGCCTaGGACTCGGCCCTGCAGGCTCGTGTCACCCCGTCA | + |
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Preference number: 6 (lower is better) Translates to: PRIPDGWSYLRA*DSALQARVTPS Trigger: TGACGGGGTGACACGAGCCTGCAGGGCCGAGTCCAAGGCCCGGAGATAGGACCAACCGTCAGGAATGCGAGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000601250.1 ENST00000669926.1 |
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| CDS CCA 72 bp | CTCGCATTCCTGACGGTTGGTCCTATCTCCGGGCCTTaGACTCGGCCCTGCAGGCTCGTGTCACCCCGTCAA | + |
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Preference number: 6 (lower is better) Translates to: LAFLTVGPISGP*TRPCRLVSPRQ Trigger: TTGACGGGGTGACACGAGCCTGCAGGGCCGAGTCCAAGGCCCGGAGATAGGACCAACCGTCAGGAATGCGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000601250.1 ENST00000669926.1 |
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| CDS CCA 72 bp | GGAGCATTTATTAGCGCAGGGCCAGTGCCTGGTTTATaGACCCCAGCTGGGTGGGAGGATGCCACCCCACCC | + |
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Preference number: 6 (lower is better) Translates to: GAFISAGPVPGL*TPAGWEDATPP Trigger: GGGTGGGGTGGCATCCTCCCACCCAGCTGGGGTCCATAAACCAGGCACTGGCCCTGCGCTAATAAATGCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS CAA 72 bp | GATCAGTTCCTCCCGGCAGTCTCTGCCCTCCGAGCTTaGGTGGCCGTGTGGATGCTAAGCCGGGCTTTCCTT | + |
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Preference number: 6 (lower is better) Translates to: DQFLPAVSALRA*VAVWMLSRAFL Trigger: AAGGAAAGCCCGGCTTAGCATCCACACGGCCACCAAAGCTCGGAGGGCAGAGACTGCCGGGAGGAACTGATC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS CAA 90 bp | AAAAACATTCCTCGCATTCCTGACGGTTGGTCCTATCTCCGGGCCTaGGACTCGGCCCTGCAGGCTCGTGTCACCCCGTCAAACGGCCTA | + |
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Preference number: 6 (lower is better) Translates to: KNIPRIPDGWSYLRA*DSALQARVTPSNGL Trigger: TAGGCCGTTTGACGGGGTGACACGAGCCTGCAGGGCCGAGTCCAAGGCCCGGAGATAGGACCAACCGTCAGGAATGCGAGGAATGTTTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000601250.1 ENST00000669926.1 |
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| CDS CAA 90 bp | CTCTCATCAGATCAGTTCCTCCCGGCAGTCTCTGCCCTCCGAGCTTaGGTGGCCGTGTGGATGCTAAGCCGGGCTTTCCTTCTGCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: LSSDQFLPAVSALRA*VAVWMLSRAFLLLL Trigger: AAGGAGCAGAAGGAAAGCCCGGCTTAGCATCCACACGGCCACCAAAGCTCGGAGGGCAGAGACTGCCGGGAGGAACTGATCTGATGAGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS TCA 72 bp | AGCAGGCTCCTGTCCTGTGATTCCACAAAGGAAGGCTaGGTGACCATGTTAGCCAAGCTCCCCGGTGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: SRLLSCDSTKEG*VTMLAKLPGAL Trigger: CAGGGCACCGGGGAGCTTGGCTAACATGGTCACTCAGCCTTCCTTTGTGGAATCACAGGACAGGAGCCTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS TCA 72 bp | CCAGGTGTTCATTTGGGAAGCATCTCGGCTCTGAGCTaGCGCGGCGATTGCAGTGGGTTTGCAGACTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: PGVHLGSISALS*RGDCSGFADCS Trigger: GCTGCAGTCTGCAAACCCACTGCAATCGCCGCGTCAGCTCAGAGCCGAGATGCTTCCCAAATGAACACCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS GCA 72 bp | GATCCTCTCATCAGATCAGTTCCTCCCGGCAGTCTCTaGCCTCCGAGCTTTGGTGGCCGTGTGGATGCTAAG | + |
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Preference number: 6 (lower is better) Translates to: DPLIRSVPPGSL*PPSFGGRVDAK Trigger: CTTAGCATCCACACGGCCACCAAAGCTCGGAGGGCAGAGACTGCCGGGAGGAACTGATCTGATGAGAGGATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS CAA 72 bp | ACCATGTTAGCCAAGCTCCCCGGTGCCCTGTCCGTGTaGGAGAAATGGGCACTTAGTGCAGTTGCCCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: TMLAKLPGALSV*EKWALSAVALL Trigger: GAGCAGGGCAACTGCACTAAGTGCCCATTTCTCCAACACGGACAGGGCACCGGGGAGCTTGGCTAACATGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS CAA 90 bp | TCCCCGGTGCCCTGTCCGTGTTGGAGAAATGGGCACTTAGTGCAGTaGCCCTGCTCTCTCATGGATCCTCTCATCAGATCAGTTCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: SPVPCPCWRNGHLVQ*PCSLMDPLIRSVPP Trigger: GGGAGGAACTGATCTGATGAGAGGATCCATGAGAGAGCAGGGCAACTGCACTAAGTGCCCATTTCTCCAACACGGACAGGGCACCGGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS CCA 72 bp | AGTCCGAAGAAAAACATTCCTCGCATTCCTGACGGTTaGTCCTATCTCCGGGCCTTGGACTCGGCCCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: SPKKNIPRIPDG*SYLRALDSALQ Trigger: CTGCAGGGCCGAGTCCAAGGCCCGGAGATAGGACCAACCGTCAGGAATGCGAGGAATGTTTTTCTTCGGACT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000601250.1 ENST00000669926.1 |
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| CDS TCA 72 bp | ACCATCCAGGTGTTCATTTGGGAAGCATCTCGGCTCTaGGCTGACGCGGCGATTGCAGTGGGTTTGCAGACT | + |
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Preference number: 6 (lower is better) Translates to: TIQVFIWEASRL*ADAAIAVGLQT Trigger: AGTCTGCAAACCCACTGCAATCGCCGCGTCAGCTCAGAGCCGAGATGCTTCCCAAATGAACACCTGGATGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS GCA 72 bp | TGTGCTTCTCACTTGCAGGGTGGGCAATGCCATTTCTaGAGCCGTCCAGGGCTCTGGCAAATGTTAAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: CASHLQGGQCHF*SRPGLWQMLRL Trigger: CAGCCTTAACATTTGCCAGAGCCCTGGACGGCTGCAGAAATGGCATTGCCCACCCTGCAAGTGAGAAGCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000601250.1 ENST00000669926.1 |
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| CDS GCA 72 bp | CTCGGCTCTGAGCTGACGCGGCGATTGCAGTGGGTTTaGAGACTGCAGCGTTTTTCTATTCATCAGGGTCCA | + |
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Preference number: 6 (lower is better) Translates to: LGSELTRRLQWV*RLQRFSIHQGP Trigger: TGGACCCTGATGAATAGAAAAACGCTGCAGTCTGCAAACCCACTGCAATCGCCGCGTCAGCTCAGAGCCGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS CCA 72 bp | CTACATTTCTCGAGTCTGTGCTTCTCACTTGCAGGGTaGGCAATGCCATTTCTGCAGCCGTCCAGGGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: LHFSSLCFSLAG*AMPFLQPSRAL Trigger: CAGAGCCCTGGACGGCTGCAGAAATGGCATTGCCCACCCTGCAAGTGAGAAGCACAGACTCGAGAAATGTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000601250.1 ENST00000669926.1 |
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| CDS CCA 72 bp | GTTTTTCTTCGGTGCTGGGTTGATCCTGGGGCCGAGTaGCTGCTCTCGAGTTCCCTACATTTCTCGAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: VFLRCWVDPGAE*LLSSSLHFSSL Trigger: CAGACTCGAGAAATGTAGGGAACTCGAGAGCAGCCACTCGGCCCCAGGATCAACCCAGCACCGAAGAAAAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000601250.1 ENST00000650200.1 ENST00000654153.1 ENST00000669926.1 |
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| CDS TCA 72 bp | TCGATAGAGTCCGAAGAAAAACATTCCTCGCATTCCTaGCGGTTGGTCCTATCTCCGGGCCTTGGACTCGGC | + |
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Preference number: 6 (lower is better) Translates to: SIESEEKHSSHS*RLVLSPGLGLG Trigger: GCCGAGTCCAAGGCCCGGAGATAGGACCAACCGTCAGGAATGCGAGGAATGTTTTTCTTCGGACTCTATCGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000601250.1 ENST00000669926.1 |
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| CDS CCA 72 bp | AAGCATCTCGGCTCTGAGCTGACGCGGCGATTGCAGTaGGTTTGCAGACTGCAGCGTTTTTCTATTCATCAG | + |
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Preference number: 6 (lower is better) Translates to: KHLGSELTRRLQ*VCRLQRFSIHQ Trigger: CTGATGAATAGAAAAACGCTGCAGTCTGCAAACCCACTGCAATCGCCGCGTCAGCTCAGAGCCGAGATGCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS CAA 72 bp | CCCTGTCCGTGTTGGAGAAATGGGCACTTAGTGCAGTaGCCCTGCTCTCTCATGGATCCTCTCATCAGATCA | + |
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Preference number: 6 (lower is better) Translates to: PCPCWRNGHLVQ*PCSLMDPLIRS Trigger: TGATCTGATGAGAGGATCCATGAGAGAGCAGGGCAACTGCACTAAGTGCCCATTTCTCCAACACGGACAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS CAA 72 bp | TTTGGGAAGCATCTCGGCTCTGAGCTGACGCGGCGATaGCAGTGGGTTTGCAGACTGCAGCGTTTTTCTATT | + |
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Preference number: 6 (lower is better) Translates to: FGKHLGSELTRR*QWVCRLQRFSI Trigger: AATAGAAAAACGCTGCAGTCTGCAAACCCACTGCAATCGCCGCGTCAGCTCAGAGCCGAGATGCTTCCCAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS CAA 90 bp | AGGTGTTCATTTGGGAAGCATCTCGGCTCTGAGCTGACGCGGCGATaGCAGTGGGTTTGCAGACTGCAGCGTTTTTCTATTCATCAGGGT | + |
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Preference number: 6 (lower is better) Translates to: RCSFGKHLGSELTRR*QWVCRLQRFSIHQG Trigger: ACCCTGATGAATAGAAAAACGCTGCAGTCTGCAAACCCACTGCAATCGCCGCGTCAGCTCAGAGCCGAGATGCTTCCCAAATGAACACCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS TCA 72 bp | ATAATTTCTTCTGGTTGTTTTTCTTCGGTGCTGGGTTaGTCCTGGGGCCGAGTGGCTGCTCTCGAGTTCCCT | + |
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Preference number: 6 (lower is better) Translates to: IISSGCFSSVLG*SWGRVAALEFP Trigger: AGGGAACTCGAGAGCAGCCACTCGGCCCCAGGATCAACCCAGCACCGAAGAAAAACAACCAGAAGAAATTAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000601250.1 ENST00000650200.1 ENST00000654153.1 ENST00000669926.1 |
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| CDS TCA 72 bp | AGGTATCATAAAGCCATTCATAACGGCATAAACGCCTaGCAACACTCCCTGATGCCAGCCCGGGGTAAGTCG | + |
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Preference number: 6 (lower is better) Translates to: RYHKAIHNGINA*QHSLMPARGKS Trigger: CGACTTACCCCGGGCTGGCATCAGGGAGTGTTGTCAGGCGTTTATGCCGTTATGAATGGCTTTATGATACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS GCA 72 bp | CCGTGTTGGAGAAATGGGCACTTAGTGCAGTTGCCCTaGTCTCTCATGGATCCTCTCATCAGATCAGTTCCT | + |
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Preference number: 6 (lower is better) Translates to: PCWRNGHLVQLP*SLMDPLIRSVP Trigger: AGGAACTGATCTGATGAGAGGATCCATGAGAGAGCAGGGCAACTGCACTAAGTGCCCATTTCTCCAACACGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS CAA 72 bp | AATAATTTCTTCTGGTTGTTTTTCTTCGGTGCTGGGTaGATCCTGGGGCCGAGTGGCTGCTCTCGAGTTCCC | + |
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Preference number: 6 (lower is better) Translates to: NNFFWLFFFGAG*ILGPSGCSRVP Trigger: GGGAACTCGAGAGCAGCCACTCGGCCCCAGGATCAACCCAGCACCGAAGAAAAACAACCAGAAGAAATTATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000601250.1 ENST00000650200.1 ENST00000654153.1 ENST00000669926.1 |
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| CDS TCA 72 bp | TTTGTAAATGCTGGCCCAAAGCAGGCTCCTGTCCTGTaGTTCCACAAAGGAAGGCTGAGTGACCATGTTAGC | + |
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Preference number: 6 (lower is better) Translates to: FVNAGPKQAPVL*FHKGRLSDHVS Trigger: GCTAACATGGTCACTCAGCCTTCCTTTGTGGAATCACAGGACAGGAGCCTGCTTTGGGCCAGCATTTACAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS TCA 72 bp | AGCCTGCGTCCTGGCCTGAAGTGTTTACTGTCAGGGTaGTTTACACCATCCAGGTGTTCATTTGGGAAGCAT | + |
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Preference number: 6 (lower is better) Translates to: SLRPGLKCLLSG*FTPSRCSFGKH Trigger: ATGCTTCCCAAATGAACACCTGGATGGTGTAAATCACCCTGACAGTAAACACTTCAGGCCAGGACGCAGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650200.1 |
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| CDS TCA 72 bp | GCTCTCGAGTTCCCTACATTTCTCGAGTCTGTGCTGTaGGTGGAAAGAAACAGAGCCATAAAAAGCCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: ALEFPTFLESVL*VERNRAIKSLS Trigger: GGAGAGGCTTTTTATGGCTCTGTTTCTTTCCACTCACAGCACAGACTCGAGAAATGTAGGGAACTCGAGAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654153.1 |
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| CDS GCA 72 bp | TGTCACTGTAGACAGAATCCCCATGGTCTGTCTGTGTaGCTCGATAGAGTCCGAAGAAAAACATTCCTCGCA | + |
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Preference number: 6 (lower is better) Translates to: CHCRQNPHGLSV*LDRVRRKTFLA Trigger: TGCGAGGAATGTTTTTCTTCGGACTCTATCGAGGCACACAGACAGACCATGGGGATTCTGTCTACAGTGACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000601250.1 ENST00000669926.1 |
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| CDS GCA 72 bp | AGCCTCTCCCAAAGCTGCTGCATAACGTTTACATTGTaGGTCCTCACATCTGTCTGGCTTAGGAACATTTCA | + |
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Preference number: 6 (lower is better) Translates to: SLSQSCCITFTL*VLTSVWLRNIS Trigger: TGAAATGTTCCTAAGCCAGACAGATGTGAGGACGCACAATGTAAACGTTATGCAGCAGCTTTGGGAGAGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654153.1 |
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| CDS TCA 72 bp | AGGGTGAAAACTGGGACCAATTTGCTGCCTAAACCCTaGGGATACAGCAAGTTTGATTCTCGACCTTTAAGG | + |
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Preference number: 6 (lower is better) Translates to: RVKTGTNLLPKP*GYSKFDSRPLR Trigger: CCTTAAAGGTCGAGAATCAAACTTGCTGTATCCTCAGGGTTTAGGCAGCAAATTGGTCCCAGTTTTCACCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669926.1 |
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| CDS CAA 72 bp | AAAAGCCTCTCCCAAAGCTGCTGCATAACGTTTACATaGTGCGTCCTCACATCTGTCTGGCTTAGGAACATT | + |
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Preference number: 6 (lower is better) Translates to: KSLSQSCCITFT*CVLTSVWLRNI Trigger: AATGTTCCTAAGCCAGACAGATGTGAGGACGCACAATGTAAACGTTATGCAGCAGCTTTGGGAGAGGCTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654153.1 |
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| CDS CAA 90 bp | AGAGCCATAAAAAGCCTCTCCCAAAGCTGCTGCATAACGTTTACATaGTGCGTCCTCACATCTGTCTGGCTTAGGAACATTTCAGATAGA | + |
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Preference number: 6 (lower is better) Translates to: RAIKSLSQSCCITFT*CVLTSVWLRNISDR Trigger: TCTATCTGAAATGTTCCTAAGCCAGACAGATGTGAGGACGCACAATGTAAACGTTATGCAGCAGCTTTGGGAGAGGCTTTTTATGGCTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654153.1 |
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| CDS GCA 72 bp | GAAAGAAACAGAGCCATAAAAAGCCTCTCCCAAAGCTaGTGCATAACGTTTACATTGTGCGTCCTCACATCT | + |
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Preference number: 6 (lower is better) Translates to: ERNRAIKSLSQS*CITFTLCVLTS Trigger: AGATGTGAGGACGCACAATGTAAACGTTATGCAGCAGCTTTGGGAGAGGCTTTTTATGGCTCTGTTTCTTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654153.1 |
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