Pregenerated sensors for LINC01079 (Homo sapiens)
Ensembl gene IDs: ENSG00000229609Ensembl transcript IDs: ENST00000431171.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTCATAGGTCACCTTTGGAGCCAAGGTAAAGATGGCAGCTTGGTCTaGCTAAGGAGGAGTCCACAGATGCGGCTCGTCCGCACAGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: LIGHLWSQGKDGSLV*LRRSPQMRLVRTAG Trigger: GCCTGCTGTGCGGACGAGCCGCATCTGTGGACTCCTCCTTAGTCAGACCAAGCTGCCATCTTTACCTTGGCTCCAAAGGTGACCTATGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431171.1 |
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| CDS CCA 90 bp | AGAGAGGCATTGCCTGATGTTCAGAGTGCAGGGCCTCTGGGAGCCTaGCATGAAGGGCCCAAGGACAACCAGCTTAGCACTCAAGTATCC | + |
|
Preference number: 5 (lower is better) Translates to: REALPDVQSAGPLGA*HEGPKDNQLSTQVS Trigger: GGATACTTGAGTGCTAAGCTGGTTGTCCTTGGGCCCTTCATGCCAGGCTCCCAGAGGCCCTGCACTCTGAACATCAGGCAATGCCTCTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431171.1 |
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| CDS TCA 90 bp | CACCTGGGGCAGGAACTAGGATGGAAATCCAGGCAGTCTTGTTGCTaGGACCATCTCCATAATCCTCTGCTAAACTTCTTCCTACCGAGA | + |
|
Preference number: 5 (lower is better) Translates to: HLGQELGWKSRQSCC*DHLHNPLLNFFLPR Trigger: TCTCGGTAGGAAGAAGTTTAGCAGAGGATTATGGAGATGGTCTCAGCAACAAGACTGCCTGGATTTCCATCCTAGTTCCTGCCCCAGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431171.1 |
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| CDS CAA 72 bp | TTGCTGCTGATTAAAGCTATGTATCATAGAGAGGCATaGCCTGATGTTCAGAGTGCAGGGCCTCTGGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: LLLIKAMYHREA*PDVQSAGPLGA Trigger: GGCTCCCAGAGGCCCTGCACTCTGAACATCAGGCAATGCCTCTCTATGATACATAGCTTTAATCAGCAGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431171.1 |
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| CDS TCA 72 bp | CAGGAACTAGGATGGAAATCCAGGCAGTCTTGTTGCTaGGACCATCTCCATAATCCTCTGCTAAACTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: QELGWKSRQSCC*DHLHNPLLNFF Trigger: GAAGAAGTTTAGCAGAGGATTATGGAGATGGTCTCAGCAACAAGACTGCCTGGATTTCCATCCTAGTTCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431171.1 |
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