Pregenerated sensors for LINC01077 (Homo sapiens)
Ensembl gene IDs: ENSG00000233456Ensembl transcript IDs: ENST00000452288.1
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCTCTGCTTCGGGGCTCTGAGAATGTAGGGTCACTAGAAGAGGCTTaGGCTTCTAGTGGGATGAAGATGACGGGGCACTGGGAGGGAGAG | + |
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Preference number: 5 (lower is better) Translates to: SLLRGSENVGSLEEA*ASSGMKMTGHWEGE Trigger: CTCTCCCTCCCAGTGCCCCGTCATCTTCATCCCACTAGAAGCCCAAGCCTCTTCTAGTGACCCTACATTCTCAGAGCCCCGAAGCAGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452288.1 |
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| CDS CCA 72 bp | CGGGGCTCTGAGAATGTAGGGTCACTAGAAGAGGCTTaGGCTTCTAGTGGGATGAAGATGACGGGGCACTGG | + |
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Preference number: 6 (lower is better) Translates to: RGSENVGSLEEA*ASSGMKMTGHW Trigger: CCAGTGCCCCGTCATCTTCATCCCACTAGAAGCCCAAGCCTCTTCTAGTGACCCTACATTCTCAGAGCCCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000452288.1 |
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| CDS CCA 72 bp | GTAAACAGCTCACAAGTGAGGTCTGGCCTCTGGGTCTaGAGCGGCTGTAGAAGCAGCTTCTGTTCTCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: VNSSQVRSGLWV*SGCRSSFCSLL Trigger: AAGCAGAGAACAGAAGCTGCTTCTACAGCCGCTCCAGACCCAGAGGCCAGACCTCACTTGTGAGCTGTTTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000452288.1 |
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| CDS CAA 90 bp | AGTCCAAGGAAGGTGTTTTGCTGGGTTCTGAAGAATAGCTTCTCTTaGCTTCCAGTCAGGTCCCAGGTGCGCAGTGTGACAGTTCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: SPRKVFCWVLKNSFS*LPVRSQVRSVTVLP Trigger: AGGCAGAACTGTCACACTGCGCACCTGGGACCTGACTGGAAGCAAAGAGAAGCTATTCTTCAGAACCCAGCAAAACACCTTCCTTGGACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452288.1 |
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| CDS CAA 72 bp | AAGGTGTTTTGCTGGGTTCTGAAGAATAGCTTCTCTTaGCTTCCAGTCAGGTCCCAGGTGCGCAGTGTGACA | + |
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Preference number: 6 (lower is better) Translates to: KVFCWVLKNSFS*LPVRSQVRSVT Trigger: TGTCACACTGCGCACCTGGGACCTGACTGGAAGCAAAGAGAAGCTATTCTTCAGAACCCAGCAAAACACCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452288.1 |
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| CDS TCA 72 bp | TATGTTGATCAGTTGCCTGGCTCAGTCAGCAAACACTaGGGTGCCTATAAAGTCCAAGGAAGGTGTTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: YVDQLPGSVSKH*GAYKVQGRCFA Trigger: AGCAAAACACCTTCCTTGGACTTTATAGGCACCTCAGTGTTTGCTGACTGAGCCAGGCAACTGATCAACATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000452288.1 |
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