Pregenerated sensors for LINC01070 (Homo sapiens)
Ensembl gene IDs: ENSG00000260102Ensembl transcript IDs: ENST00000561786.1, ENST00000633716.1, ENST00000668240.1
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGTCCCGCACACCTGGCTGACAGGAGCCATCCTGCTGGCGGAACATaGTGGCCGGGGAGCTGCCCCAGCCTCTGGCAGTATGGGAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: GPAHLADRSHPAGGT*WPGSCPSLWQYGKQ Trigger: CTGCTTCCCATACTGCCAGAGGCTGGGGCAGCTCCCCGGCCACCATGTTCCGCCAGCAGGATGGCTCCTGTCAGCCAGGTGTGCGGGACC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CCA 90 bp | AGTCTCCAACAGGGACACAGTCTCCCGGAGCAGCCATGGGGCGGCTaGGTCTGGGCTGCCCTCCCTGCTTCTTGCCAGTGTGCCCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: SLQQGHSLPEQPWGG*VWAALPASCQCAQV Trigger: GACCTGGGCACACTGGCAAGAAGCAGGGAGGGCAGCCCAGACCCAGCCGCCCCATGGCTGCTCCGGGAGACTGTGTCCCTGTTGGAGACT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CCA 90 bp | AGAGGTGCCATCTTGGAAGCAGAGGCTGGGTCCTCACCCACCGGCTaGGAACCAGCTGGTGTCTTCATCGTGGACTTTCCGGCCTCCAGA | + |
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Preference number: 5 (lower is better) Translates to: RGAILEAEAGSSPTG*EPAGVFIVDFPASR Trigger: TCTGGAGGCCGGAAAGTCCACGATGAAGACACCAGCTGGTTCCCAGCCGGTGGGTGAGGACCCAGCCTCTGCTTCCAAGATGGCACCTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS GCA 90 bp | TGGTCGCTGCCTCTGCTGGTCAAAGCTGCCTGGTCAAGCTATGAATaGTGTCTCCAGCTCTCCCTTGAATCTGGAGACTGGCCTGTTTTA | + |
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Preference number: 5 (lower is better) Translates to: WSLPLLVKAAWSSYE*CLQLSLESGDWPVL Trigger: TAAAACAGGCCAGTCTCCAGATTCAAGGGAGAGCTGGAGACAGCATTCATAGCTTGACCAGGCAGCTTTGACCAGCAGAGGCAGCGACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668240.1 |
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| CDS GCA 90 bp | CTTCCTTTGTCACACCTGGTCAAAGCTGCCTGGTCAAGCTATGAATaGTGTCTCCAGCTCTCCCTTGAATCTGGAGACTGGCCTGTTTTA | + |
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Preference number: 5 (lower is better) Translates to: LPLSHLVKAAWSSYE*CLQLSLESGDWPVL Trigger: TAAAACAGGCCAGTCTCCAGATTCAAGGGAGAGCTGGAGACAGCATTCATAGCTTGACCAGGCAGCTTTGACCAGGTGTGACAAAGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CCA 90 bp | CAAATATCGTGTTTCTTGAAGCAGGTCACGCCTTTACGAAGGGTCTaGAAGGGAGAGGATTTGACAGTGGGGCACCTGCATTTACAGGCT | + |
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Preference number: 5 (lower is better) Translates to: QISCFLKQVTPLRRV*KGEDLTVGHLHLQA Trigger: AGCCTGTAAATGCAGGTGCCCCACTGTCAAATCCTCTCCCTTCCAGACCCTTCGTAAAGGCGTGACCTGCTTCAAGAAACACGATATTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS CCA 90 bp | AGAAACATGAATAGACTGGGACATCTGGGCTTCCTTTGTCACACCTaGTCAAAGCTGCCTGGTCAAGCTATGAATGCTGTCTCCAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: RNMNRLGHLGFLCHT*SKLPGQAMNAVSSS Trigger: AGAGCTGGAGACAGCATTCATAGCTTGACCAGGCAGCTTTGACCAGGTGTGACAAAGGAAGCCCAGATGTCCCAGTCTATTCATGTTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CCA 90 bp | TATTTACCATATGATACTGGCAGAGGGGTTGATGGACAAGACAGATaGAGCAATGGCTGGGACGGATCGTGGATCTATCACAGTCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: YLPYDTGRGVDGQDR*SNGWDGSWIYHSLQ Trigger: TTGGAGACTGTGATAGATCCACGATCCGTCCCAGCCATTGCTCCATCTGTCTTGTCCATCAACCCCTCTGCCAGTATCATATGGTAAATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS TCA 90 bp | GCTTTGTGGCAAACCCATTCCACAATAAAAGCAGCATTGGCCACCTaGGGAAGTGGGAGGAAGAATTGTGAGGCTTTATCTTCTCCTCTT | + |
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Preference number: 5 (lower is better) Translates to: ALWQTHSTIKAALAT*GSGRKNCEALSSPL Trigger: AAGAGGAGAAGATAAAGCCTCACAATTCTTCCTCCCACTTCCTCAGGTGGCCAATGCTGCTTTTATTGTGGAATGGGTTTGCCACAAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS TCA 90 bp | CCCCAGCTACAAACTGTGTCGTTAAACTCTAACTCGTCAGTTCTCTaGTGTGACCTGGGTGCCTGGAACTGTAGTATTCATGGTACTATT | + |
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Preference number: 5 (lower is better) Translates to: PQLQTVSLNSNSSVL*CDLGAWNCSIHGTI Trigger: AATAGTACCATGAATACTACAGTTCCAGGCACCCAGGTCACATCAGAGAACTGACGAGTTAGAGTTTAACGACACAGTTTGTAGCTGGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS TCA 90 bp | TGTCAAGCTGTCATTTTTCAGAGACCCGAGTCTTATCTATCAGCCTaGGGCTTTGTGGCAAACCCATTCCACAATAAAAGCAGCATTGGC | + |
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Preference number: 5 (lower is better) Translates to: CQAVIFQRPESYLSA*GFVANPFHNKSSIG Trigger: GCCAATGCTGCTTTTATTGTGGAATGGGTTTGCCACAAAGCCTCAGGCTGATAGATAAGACTCGGGTCTCTGAAAAATGACAGCTTGACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS CCA 72 bp | AGGGCGGAGGCGTGTGTGGGCCCAGTCAGCCCAGCCTaGCCCCGAAACTGTAGGGCCTCAAGTGCGCTGCGG | + |
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Preference number: 6 (lower is better) Translates to: RAEACVGPVSPA*PRNCRASSALR Trigger: CCGCAGCGCACTTGAGGCCCTACAGTTTCGGGGCCAGGCTGGGCTGACTGGGCCCACACACGCCTCCGCCCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS CCA 72 bp | AAGACGAAGGGCCAGCCTGGAGGTGGCTTCCCGCCCTaGCTCTGGTGGGCACCCTGGAGCTGGCGGCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: KTKGQPGGGFPP*LWWAPWSWRLW Trigger: CCACAGCCGCCAGCTCCAGGGTGCCCACCAGAGCCAGGGCGGGAAGCCACCTCCAGGCTGGCCCTTCGTCTT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS GCA 72 bp | AGCCATCCTGCTGGCGGAACATGGTGGCCGGGGAGCTaGCCCAGCCTCTGGCAGTATGGGAAGCAGTGGGGG | + |
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Preference number: 6 (lower is better) Translates to: SHPAGGTWWPGS*PSLWQYGKQWG Trigger: CCCCCACTGCTTCCCATACTGCCAGAGGCTGGGGCAGCTCCCCGGCCACCATGTTCCGCCAGCAGGATGGCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CCA 72 bp | CAGGGACACAGTCTCCCGGAGCAGCCATGGGGCGGCTaGGTCTGGGCTGCCCTCCCTGCTTCTTGCCAGTGT | + |
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Preference number: 6 (lower is better) Translates to: QGHSLPEQPWGG*VWAALPASCQC Trigger: ACACTGGCAAGAAGCAGGGAGGGCAGCCCAGACCCAGCCGCCCCATGGCTGCTCCGGGAGACTGTGTCCCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CCA 72 bp | AGTCTCCAACAGGGACACAGTCTCCCGGAGCAGCCATaGGGCGGCTGGGTCTGGGCTGCCCTCCCTGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: SLQQGHSLPEQP*GGWVWAALPAS Trigger: AGAAGCAGGGAGGGCAGCCCAGACCCAGCCGCCCCATGGCTGCTCCGGGAGACTGTGTCCCTGTTGGAGACT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CAA 90 bp | CTCCCACCCCCTCCCTACGTGAGGATGCAGCCCAGAGGTGCCATCTaGGAAGCAGAGGCTGGGTCCTCACCCACCGGCTGGGAACCAGCT | + |
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Preference number: 6 (lower is better) Translates to: LPPPPYVRMQPRGAI*EAEAGSSPTGWEPA Trigger: AGCTGGTTCCCAGCCGGTGGGTGAGGACCCAGCCTCTGCTTCCAAGATGGCACCTCTGGGCTGCATCCTCACGTAGGGAGGGGGTGGGAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS GCA 72 bp | CCCACCCCCTCCCTACGTGAGGATGCAGCCCAGAGGTaGCATCTTGGAAGCAGAGGCTGGGTCCTCACCCAC | + |
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Preference number: 6 (lower is better) Translates to: PTPSLREDAAQR*HLGSRGWVLTH Trigger: GTGGGTGAGGACCCAGCCTCTGCTTCCAAGATGGCACCTCTGGGCTGCATCCTCACGTAGGGAGGGGGTGGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CCA 72 bp | GATGCAGCCCAGAGGTGCCATCTTGGAAGCAGAGGCTaGGTCCTCACCCACCGGCTGGGAACCAGCTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: DAAQRCHLGSRG*VLTHRLGTSWC Trigger: ACACCAGCTGGTTCCCAGCCGGTGGGTGAGGACCCAGCCTCTGCTTCCAAGATGGCACCTCTGGGCTGCATC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CCA 72 bp | CCTGCTTCTTGCCAGTGTGCCCAGGTCCCGCACACCTaGCTGACAGGAGCCATCCTGCTGGCGGAACATGGT | + |
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Preference number: 6 (lower is better) Translates to: PASCQCAQVPHT*LTGAILLAEHG Trigger: ACCATGTTCCGCCAGCAGGATGGCTCCTGTCAGCCAGGTGTGCGGGACCTGGGCACACTGGCAAGAAGCAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CCA 72 bp | ATCTTGGAAGCAGAGGCTGGGTCCTCACCCACCGGCTaGGAACCAGCTGGTGTCTTCATCGTGGACTTTCCG | + |
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Preference number: 6 (lower is better) Translates to: ILEAEAGSSPTG*EPAGVFIVDFP Trigger: CGGAAAGTCCACGATGAAGACACCAGCTGGTTCCCAGCCGGTGGGTGAGGACCCAGCCTCTGCTTCCAAGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CAA 72 bp | GGCATTCCTGCTGGTGACCTTAGACCTTGGGGAGGCTaGACAACAACCAAGCAGCAATGCCGCCCAGTCACC | + |
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Preference number: 6 (lower is better) Translates to: GIPAGDLRPWGG*TTTKQQCRPVT Trigger: GGTGACTGGGCGGCATTGCTGCTTGGTTGTTGTCAAGCCTCCCCAAGGTCTAAGGTCACCAGCAGGAATGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CCA 72 bp | GGACAAGACAGATGGAGCAATGGCTGGGACGGATCGTaGATCTATCACAGTCTCCAACAGGGACACAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: GQDRWSNGWDGS*IYHSLQQGHSL Trigger: GAGACTGTGTCCCTGTTGGAGACTGTGATAGATCCACGATCCGTCCCAGCCATTGCTCCATCTGTCTTGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS TCA 72 bp | TCACGCCTTTACGAAGGGTCTGGAAGGGAGAGGATTTaGCAGTGGGGCACCTGCATTTACAGGCTTTGCATC | + |
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Preference number: 6 (lower is better) Translates to: SRLYEGSGRERI*QWGTCIYRLCI Trigger: GATGCAAAGCCTGTAAATGCAGGTGCCCCACTGTCAAATCCTCTCCCTTCCAGACCCTTCGTAAAGGCGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS CCA 72 bp | TCTGGGCTTCCTTTGTCACACCTGGTCAAAGCTGCCTaGTCAAGCTATGAATGCTGTCTCCAGCTCTCCCTT | + |
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Preference number: 6 (lower is better) Translates to: SGLPLSHLVKAA*SSYECCLQLSL Trigger: AAGGGAGAGCTGGAGACAGCATTCATAGCTTGACCAGGCAGCTTTGACCAGGTGTGACAAAGGAAGCCCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CCA 72 bp | AGAGGGGTTGATGGACAAGACAGATGGAGCAATGGCTaGGACGGATCGTGGATCTATCACAGTCTCCAACAG | + |
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Preference number: 6 (lower is better) Translates to: RGVDGQDRWSNG*DGSWIYHSLQQ Trigger: CTGTTGGAGACTGTGATAGATCCACGATCCGTCCCAGCCATTGCTCCATCTGTCTTGTCCATCAACCCCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CCA 72 bp | TGTTTCTTGAAGCAGGTCACGCCTTTACGAAGGGTCTaGAAGGGAGAGGATTTGACAGTGGGGCACCTGCAT | + |
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Preference number: 6 (lower is better) Translates to: CFLKQVTPLRRV*KGEDLTVGHLH Trigger: ATGCAGGTGCCCCACTGTCAAATCCTCTCCCTTCCAGACCCTTCGTAAAGGCGTGACCTGCTTCAAGAAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS CAA 90 bp | CGTAGGGTCCTAAAGTCCCTCGTGGAGTCTTCGAAACCCAGCTCCTaGTGTTTAAACAAGATCCAGGAGCAGTCCTTAGTGTCCCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: RRVLKSLVESSKPSS*CLNKIQEQSLVSLS Trigger: GGAGAGGGACACTAAGGACTGCTCCTGGATCTTGTTTAAACACAAGGAGCTGGGTTTCGAAGACTCCACGAGGGACTTTAGGACCCTACG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS CCA 72 bp | TATGATACTGGCAGAGGGGTTGATGGACAAGACAGATaGAGCAATGGCTGGGACGGATCGTGGATCTATCAC | + |
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Preference number: 6 (lower is better) Translates to: YDTGRGVDGQDR*SNGWDGSWIYH Trigger: GTGATAGATCCACGATCCGTCCCAGCCATTGCTCCATCTGTCTTGTCCATCAACCCCTCTGCCAGTATCATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CCA 72 bp | AATAGACTGGGACATCTGGGCTTCCTTTGTCACACCTaGTCAAAGCTGCCTGGTCAAGCTATGAATGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: NRLGHLGFLCHT*SKLPGQAMNAV Trigger: GACAGCATTCATAGCTTGACCAGGCAGCTTTGACCAGGTGTGACAAAGGAAGCCCAGATGTCCCAGTCTATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CAA 90 bp | TCAAAGCTGCCTGGTCAAGCTATGAATGCTGTCTCCAGCTCTCCCTaGAATCTGGAGACTGGCCTGTTTTATGTTTTCATCAGCCTCTGC | + |
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Preference number: 6 (lower is better) Translates to: SKLPGQAMNAVSSSP*NLETGLFYVFISLC Trigger: GCAGAGGCTGATGAAAACATAAAACAGGCCAGTCTCCAGATTCAAGGGAGAGCTGGAGACAGCATTCATAGCTTGACCAGGCAGCTTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS CAA 90 bp | TTGAAGCAGGTCACGCCTTTACGAAGGGTCTGGAAGGGAGAGGATTaGACAGTGGGGCACCTGCATTTACAGGCTTTGCATCAATTACAA | + |
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Preference number: 6 (lower is better) Translates to: LKQVTPLRRVWKGED*TVGHLHLQALHQLQ Trigger: TTGTAATTGATGCAAAGCCTGTAAATGCAGGTGCCCCACTGTCAAATCCTCTCCCTTCCAGACCCTTCGTAAAGGCGTGACCTGCTTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS CCA 72 bp | AGAGACCCGAGTCTTATCTATCAGCCTGAGGCTTTGTaGCAAACCCATTCCACAATAAAAGCAGCATTGGCC | + |
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Preference number: 6 (lower is better) Translates to: RDPSLIYQPEAL*QTHSTIKAALA Trigger: GGCCAATGCTGCTTTTATTGTGGAATGGGTTTGCCACAAAGCCTCAGGCTGATAGATAAGACTCGGGTCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS CAA 72 bp | CATGGTACTATTTACCATATGATACTGGCAGAGGGGTaGATGGACAAGACAGATGGAGCAATGGCTGGGACG | + |
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Preference number: 6 (lower is better) Translates to: HGTIYHMILAEG*MDKTDGAMAGT Trigger: CGTCCCAGCCATTGCTCCATCTGTCTTGTCCATCAACCCCTCTGCCAGTATCATATGGTAAATAGTACCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CAA 72 bp | CTAAAGTCCCTCGTGGAGTCTTCGAAACCCAGCTCCTaGTGTTTAAACAAGATCCAGGAGCAGTCCTTAGTG | + |
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Preference number: 6 (lower is better) Translates to: LKSLVESSKPSS*CLNKIQEQSLV Trigger: CACTAAGGACTGCTCCTGGATCTTGTTTAAACACAAGGAGCTGGGTTTCGAAGACTCCACGAGGGACTTTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS CAA 90 bp | TGTAGTATTCATGGTACTATTTACCATATGATACTGGCAGAGGGGTaGATGGACAAGACAGATGGAGCAATGGCTGGGACGGATCGTGGA | + |
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Preference number: 6 (lower is better) Translates to: CSIHGTIYHMILAEG*MDKTDGAMAGTDRG Trigger: TCCACGATCCGTCCCAGCCATTGCTCCATCTGTCTTGTCCATCAACCCCTCTGCCAGTATCATATGGTAAATAGTACCATGAATACTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS CAA 90 bp | ATGTCTCCCTCAGCACTAACCCTCTCCCTTAATGACAGCAGCCAATaGTTGATTGTTTATTTGATCCAAGAGACACACCTCACCCAAAGG | + |
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Preference number: 6 (lower is better) Translates to: MSPSALTLSLNDSSQ*LIVYLIQETHLTQR Trigger: CCTTTGGGTGAGGTGTGTCTCTTGGATCAAATAAACAATCAACAATTGGCTGCTGTCATTAAGGGAGAGGGTTAGTGCTGAGGGAGACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS TCA 72 bp | CAAACCCATTCCACAATAAAAGCAGCATTGGCCACCTaGGGAAGTGGGAGGAAGAATTGTGAGGCTTTATCT | + |
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Preference number: 6 (lower is better) Translates to: QTHSTIKAALAT*GSGRKNCEALS Trigger: AGATAAAGCCTCACAATTCTTCCTCCCACTTCCTCAGGTGGCCAATGCTGCTTTTATTGTGGAATGGGTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS CAA 72 bp | TTCAGAGACCCGAGTCTTATCTATCAGCCTGAGGCTTaGTGGCAAACCCATTCCACAATAAAAGCAGCATTG | + |
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Preference number: 6 (lower is better) Translates to: FRDPSLIYQPEA*WQTHSTIKAAL Trigger: CAATGCTGCTTTTATTGTGGAATGGGTTTGCCACAAAGCCTCAGGCTGATAGATAAGACTCGGGTCTCTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS TCA 72 bp | CAAACTGTGTCGTTAAACTCTAACTCGTCAGTTCTCTaGTGTGACCTGGGTGCCTGGAACTGTAGTATTCAT | + |
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Preference number: 6 (lower is better) Translates to: QTVSLNSNSSVL*CDLGAWNCSIH Trigger: ATGAATACTACAGTTCCAGGCACCCAGGTCACATCAGAGAACTGACGAGTTAGAGTTTAACGACACAGTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS TCA 72 bp | GTCATTTTTCAGAGACCCGAGTCTTATCTATCAGCCTaGGGCTTTGTGGCAAACCCATTCCACAATAAAAGC | + |
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Preference number: 6 (lower is better) Translates to: VIFQRPESYLSA*GFVANPFHNKS Trigger: GCTTTTATTGTGGAATGGGTTTGCCACAAAGCCTCAGGCTGATAGATAAGACTCGGGTCTCTGAAAAATGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000561786.1 ENST00000633716.1 ENST00000668240.1 |
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| CDS TCA 72 bp | CAGGTAGAGAAATTGAGGCCTAGATGGGGAATGACATaGATTTCTAAGCTGCTAAATGATGGAGAAAAGGTT | + |
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Preference number: 6 (lower is better) Translates to: QVEKLRPRWGMT*ISKLLNDGEKV Trigger: AACCTTTTCTCCATCATTTAGCAGCTTAGAAATTCATGTCATTCCCCATCTAGGCCTCAATTTCTCTACCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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| CDS TCA 72 bp | AAATTACTAATTCAAAGGCATTTTGTGATAGAAACATaGATAGACTGGGACATCTGGGCTTCCTTTGTCACA | + |
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Preference number: 6 (lower is better) Translates to: KLLIQRHFVIET*IDWDIWASFVT Trigger: TGTGACAAAGGAAGCCCAGATGTCCCAGTCTATTCATGTTTCTATCACAAAATGCCTTTGAATTAGTAATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000561786.1 ENST00000633716.1 |
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