Pregenerated sensors for LINC01068 (Homo sapiens)
Ensembl gene IDs: ENSG00000227676Ensembl transcript IDs: ENST00000450187.2, ENST00000620874.2, ENST00000661483.1
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GTCTCATCCTGTCCGGACACTTTTCACCTCATCACTGAAGGTCACTaGAGGTCACTACTTCATGGTTCTCTGGATGATCTTGCTTCCTTT | + |
|
Preference number: 5 (lower is better) Translates to: VSSCPDTFHLITEGH*RSLLHGSLDDLASF Trigger: AAAGGAAGCAAGATCATCCAGAGAACCATGAAGTAGTGACCTTCAGTGACCTTCAGTGATGAGGTGAAAAGTGTCCGGACAGGATGAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000450187.2 ENST00000661483.1 |
||
| CDS TCA 72 bp | AAGTCATTTCTCCCTCATACCCCTTCTGCAGATGTGTaGATGCTGATGAATGCCAGACCTAGGGGATGGGGG | + |
|
Preference number: 6 (lower is better) Translates to: KSFLPHTPSADV*MLMNARPRGWG Trigger: CCCCCATCCCCTAGGTCTGGCATTCATCAGCATTCACACATCTGCAGAAGGGGTATGAGGGAGAAATGACTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000661483.1 |
||
| CDS TCA 72 bp | GGTCTCATCCTGTCCGGACACTTTTCACCTCATCACTaGAGGTCACTGAAGGTCACTACTTCATGGTTCTCT | + |
|
Preference number: 6 (lower is better) Translates to: GLILSGHFSPHH*RSLKVTTSWFS Trigger: AGAGAACCATGAAGTAGTGACCTTCAGTGACCTTCAGTGATGAGGTGAAAAGTGTCCGGACAGGATGAGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000450187.2 ENST00000661483.1 |
||
| CDS CAA 90 bp | ATGTGTTCAGCACAGCATCAAGTTCAAAGCATAATAATCACAAGGTaGTACCTGCTTCTCTCTAGTAACATTCTTCAAAGACATGCTAGC | + |
|
Preference number: 6 (lower is better) Translates to: MCSAQHQVQSIIITR*YLLLSSNILQRHAS Trigger: GCTAGCATGTCTTTGAAGAATGTTACTAGAGAGAAGCAGGTACAACCTTGTGATTATTATGCTTTGAACTTGATGCTGTGCTGAACACAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000450187.2 ENST00000620874.2 ENST00000661483.1 |
||