Pregenerated sensors for LINC01067 (Homo sapiens)
Ensembl gene IDs: ENSG00000236053Ensembl transcript IDs: ENST00000432575.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGAGACGCTCCTCACTTCCTAGACGGGATGGCGGCCGGGAAGAGGTaGTCCTCACTTCCCAGACTGGGCGGCCGGGCAGAGGGGCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: RDAPHFLDGMAAGKR*SSLPRLGGRAEGLL Trigger: GAGGAGCCCCTCTGCCCGGCCGCCCAGTCTGGGAAGTGAGGAGCACCTCTTCCCGGCCGCCATCCCGTCTAGGAAGTGAGGAGCGTCTCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432575.1 |
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| CDS GCA 90 bp | AGGCGGCTGGGAGGTGGAGGTTTTAGCGAGCCGAGATCACGCCACTaGACTCCAGCCTTATCAGAGGAAGTTGCGCTGTTTGCCTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: RRLGGGGFSEPRSRH*TPALSEEVALFACS Trigger: GGAACAGGCAAACAGCGCAACTTCCTCTGATAAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCGCTAAAACCTCCACCTCCCAGCCGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432575.1 |
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| CDS TCA 90 bp | GAGGAAGTTGCGCTGTTTGCCTGTTCCTTCAGTGAGATCTCCTACTaGGCTGAATTCAAAACAGTTAAGATAAACGTTAGCTCTTTAGAG | + |
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Preference number: 5 (lower is better) Translates to: EEVALFACSFSEISY*AEFKTVKINVSSLE Trigger: CTCTAAAGAGCTAACGTTTATCTTAACTGTTTTGAATTCAGCTCAGTAGGAGATCTCACTGAAGGAACAGGCAAACAGCGCAACTTCCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432575.1 |
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| CDS CCA 72 bp | GCGGCCGGGCAGAGGGGCTCCTCACGTCCCAGACGATaGGCGGCCAGGCAGAGACGCTCCTCACTTCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: AAGQRGSSRPRR*AARQRRSSLPR Trigger: TCTGGGAAGTGAGGAGCGTCTCTGCCTGGCCGCCCATCGTCTGGGACGTGAGGAGCCCCTCTGCCCGGCCGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432575.1 |
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| CDS CCA 72 bp | TGCTGGGCGGAGGGGCTCCTCACTTCTGGGACAGGGTaGCCGGGCAGAGACACTCCTCACCTCCCAGACGGG | + |
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Preference number: 6 (lower is better) Translates to: CWAEGLLTSGTG*PGRDTPHLPDG Trigger: CCCGTCTGGGAGGTGAGGAGTGTCTCTGCCCGGCCACCCTGTCCCAGAAGTGAGGAGCCCCTCCGCCCAGCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432575.1 |
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| CDS GCA 72 bp | CCTCACTTCCTAGACGGGATGGCGGCCGGGAAGAGGTaGTCCTCACTTCCCAGACTGGGCGGCCGGGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: PHFLDGMAAGKR*SSLPRLGGRAE Trigger: CTCTGCCCGGCCGCCCAGTCTGGGAAGTGAGGAGCACCTCTTCCCGGCCGCCATCCCGTCTAGGAAGTGAGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432575.1 |
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| CDS CAA 72 bp | GATCACGCCACTGCACTCCAGCCTTATCAGAGGAAGTaGCGCTGTTTGCCTGTTCCTTCAGTGAGATCTCCT | + |
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Preference number: 6 (lower is better) Translates to: DHATALQPYQRK*RCLPVPSVRSP Trigger: AGGAGATCTCACTGAAGGAACAGGCAAACAGCGCAACTTCCTCTGATAAGGCTGGAGTGCAGTGGCGTGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432575.1 |
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| CDS CAA 90 bp | GATCACGCCACTGCACTCCAGCCTTATCAGAGGAAGTTGCGCTGTTaGCCTGTTCCTTCAGTGAGATCTCCTACTGAGCTGAATTCAAAA | + |
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Preference number: 6 (lower is better) Translates to: DHATALQPYQRKLRC*PVPSVRSPTELNSK Trigger: TTTTGAATTCAGCTCAGTAGGAGATCTCACTGAAGGAACAGGCAAACAGCGCAACTTCCTCTGATAAGGCTGGAGTGCAGTGGCGTGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000432575.1 |
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| CDS TCA 72 bp | GCGCTGTTTGCCTGTTCCTTCAGTGAGATCTCCTACTaGGCTGAATTCAAAACAGTTAAGATAAACGTTAGC | + |
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Preference number: 6 (lower is better) Translates to: ALFACSFSEISY*AEFKTVKINVS Trigger: GCTAACGTTTATCTTAACTGTTTTGAATTCAGCTCAGTAGGAGATCTCACTGAAGGAACAGGCAAACAGCGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000432575.1 |
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