Pregenerated sensors for LINC01065 (Homo sapiens)
Ensembl gene IDs: ENSG00000237092Ensembl transcript IDs: ENST00000417989.1, ENST00000656207.1, ENST00000659074.1, ENST00000660057.1, ENST00000663896.1, ENST00000664555.1, ENST00000666982.1, ENST00000669246.1
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGTCAGGGATGTTGTCTCCTCAGGGAGCCCGCCTCTTCCCACTGCTaGGCGCAGACGGCCTGCACGCGGACGCCATTTTCTTTGGTACAC | + |
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Preference number: 5 (lower is better) Translates to: CQGCCLLREPASSHC*AQTACTRTPFSLVH Trigger: GTGTACCAAAGAAAATGGCGTCCGCGTGCAGGCCGTCTGCGCGCAGCAGTGGGAAGAGGCGGGCTCCCTGAGGAGACAACATCCCTGACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666982.1 |
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| CDS GCA 90 bp | GTCTGTCAGGGATGTTGTCTCCTCAGGGAGCCCGCCTCTTCCCACTaGTGCGCGCAGACGGCCTGCACGCGGACGCCATTTTCTTTGGTA | + |
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Preference number: 5 (lower is better) Translates to: VCQGCCLLREPASSH*CAQTACTRTPFSLV Trigger: TACCAAAGAAAATGGCGTCCGCGTGCAGGCCGTCTGCGCGCAGCAGTGGGAAGAGGCGGGCTCCCTGAGGAGACAACATCCCTGACAGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666982.1 |
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| CDS CCA 90 bp | CAAAAGGGAAGTTCTTCGAGAGGACCACGGGAAGCGGCTGCCCTCTaGGTGTGCAGCCAGGCATCTGGTGGTGGGCTTGGTCAGCAGTGT | + |
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Preference number: 5 (lower is better) Translates to: QKGSSSRGPREAAAL*VCSQASGGGLGQQC Trigger: ACACTGCTGACCAAGCCCACCACCAGATGCCTGGCTGCACACCCAGAGGGCAGCCGCTTCCCGTGGTCCTCTCGAAGAACTTCCCTTTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000656207.1 ENST00000659074.1 ENST00000660057.1 |
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| CDS CCA 90 bp | ACGGGAAGCGGCTGCCCTCTGGGTGTGCAGCCAGGCATCTGGTGGTaGGCTTGGTCAGCAGTGTCAGCAGTCAGGAAGACAAACTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: TGSGCPLGVQPGIWW*AWSAVSAVRKTNFS Trigger: AGAAAAGTTTGTCTTCCTGACTGCTGACACTGCTGACCAAGCCCACCACCAGATGCCTGGCTGCACACCCAGAGGGCAGCCGCTTCCCGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000656207.1 ENST00000659074.1 ENST00000660057.1 |
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| CDS CCA 90 bp | AGCGGCTGCCCTCTGGGTGTGCAGCCAGGCATCTGGTGGTGGGCTTaGTCAGCAGTGTCAGCAGTCAGGAAGACAAACTTTTCTTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: SGCPLGVQPGIWWWA*SAVSAVRKTNFSFL Trigger: AAGAAAAGAAAAGTTTGTCTTCCTGACTGCTGACACTGCTGACCAAGCCCACCACCAGATGCCTGGCTGCACACCCAGAGGGCAGCCGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000656207.1 ENST00000659074.1 ENST00000660057.1 |
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| CDS CCA 90 bp | CGACTGATTTGGAGCAGTCATCAATTGTTAGTTCTCTTGCCTGGGTaGTGTGGGAGGATCCCCACTCAACTCAGTTCTAGGAGCAGATGT | + |
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Preference number: 5 (lower is better) Translates to: RLIWSSHQLLVLLPG*CGRIPTQLSSRSRC Trigger: ACATCTGCTCCTAGAACTGAGTTGAGTGGGGATCCTCCCACACCACCCAGGCAAGAGAACTAACAATTGATGACTGCTCCAAATCAGTCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000663896.1 ENST00000669246.1 |
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| CDS CCA 90 bp | CTCCTCCCTTCCTTCTCTCAGAATCTCCCTGACATAAGCTCCTCATaGTTCCTAACCCTTCAGGCTTATCACTTTGTCTCATTGTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: LLPSFSQNLPDISSS*FLTLQAYHFVSLSS Trigger: AGAGGACAATGAGACAAAGTGATAAGCCTGAAGGGTTAGGAACCATGAGGAGCTTATGTCAGGGAGATTCTGAGAGAAGGAAGGGAGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664555.1 |
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| CDS CCA 90 bp | GAGGATGTTGGAGGGTCAGAGATCCCATTAGTTCTTCTGAAGCACTaGTTCAGGTGGGCAATGCAGAGCTTGCAGAGAAATCAGAAAAGA | + |
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Preference number: 5 (lower is better) Translates to: EDVGGSEIPLVLLKH*FRWAMQSLQRNQKR Trigger: TCTTTTCTGATTTCTCTGCAAGCTCTGCATTGCCCACCTGAACCAGTGCTTCAGAAGAACTAATGGGATCTCTGACCCTCCAACATCCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000656207.1 ENST00000659074.1 ENST00000660057.1 |
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| CDS GCA 90 bp | AAAGTCCCACGTCACAGTCTCAGCGTATTGAAATCTGACTGTTACTaGCTTCTCTCCCTTCTGTACCCAGCTTTCCATCTGTTAGTCTCT | + |
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Preference number: 5 (lower is better) Translates to: KVPRHSLSVLKSDCY*LLSLLYPAFHLLVS Trigger: AGAGACTAACAGATGGAAAGCTGGGTACAGAAGGGAGAGAAGGCAGTAACAGTCAGATTTCAATACGCTGAGACTGTGACGTGGGACTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663896.1 ENST00000669246.1 |
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| CDS CCA 90 bp | AGTATGCTCCTTCCTTGGGGCTGTACATTAGGTGTTCCACCTTTTTaGATCACTTTCCCTCTTACTTCTTACAATCTTTCAGTCCTTGGT | + |
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Preference number: 5 (lower is better) Translates to: SMLLPWGCTLGVPPF*ITFPLTSYNLSVLG Trigger: ACCAAGGACTGAAAGATTGTAAGAAGTAAGAGGGAAAGTGATCCAAAAAGGTGGAACACCTAATGTACAGCCCCAAGGAAGGAGCATACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000663896.1 |
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| CDS CCA 90 bp | TGTTTTTCTTTCTGTTCCTTGAATTCTCCAAGTATGCTCCTTCCTTaGGGCTGTACATTAGGTGTTCCACCTTTTTGGATCACTTTCCCT | + |
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Preference number: 5 (lower is better) Translates to: CFSFCSLNSPSMLLP*GCTLGVPPFWITFP Trigger: AGGGAAAGTGATCCAAAAAGGTGGAACACCTAATGTACAGCCCCAAGGAAGGAGCATACTTGGAGAATTCAAGGAACAGAAAGAAAAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000663896.1 |
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| CDS GCA 90 bp | GATGAATGTCTAGAACGAATGTATAACAAACACCCGTGGTCTAACTaGTGTCTACTGATTTCTGATTCTTTTTCCCTCTGTGACTTCACA | + |
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Preference number: 5 (lower is better) Translates to: DECLERMYNKHPWSN*CLLISDSFSLCDFT Trigger: TGTGAAGTCACAGAGGGAAAAAGAATCAGAAATCAGTAGACAGCAGTTAGACCACGGGTGTTTGTTATACATTCGTTCTAGACATTCATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000417989.1 |
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| CDS TCA 90 bp | TACGATAGAAACTTTATTGATTTGGCACGCTTGACTTTCCCTTTCTaGGCTTTTGATGAATGTCTAGAACGAATGTATAACAAACACCCG | + |
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Preference number: 5 (lower is better) Translates to: YDRNFIDLARLTFPF*AFDECLERMYNKHP Trigger: CGGGTGTTTGTTATACATTCGTTCTAGACATTCATCAAAAGCTCAGAAAGGGAAAGTCAAGCGTGCCAAATCAATAAAGTTTCTATCGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000417989.1 |
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| CDS GCA 72 bp | GGATGTTGTCTCCTCAGGGAGCCCGCCTCTTCCCACTaGTGCGCGCAGACGGCCTGCACGCGGACGCCATTT | + |
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Preference number: 6 (lower is better) Translates to: GCCLLREPASSH*CAQTACTRTPF Trigger: AAATGGCGTCCGCGTGCAGGCCGTCTGCGCGCAGCAGTGGGAAGAGGCGGGCTCCCTGAGGAGACAACATCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000666982.1 |
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| CDS GCA 72 bp | GAGCCCGCCTCTTCCCACTGCTGCGCGCAGACGGCCTaGACGCGGACGCCATTTTCTTTGGTACACGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: EPASSHCCAQTA*TRTPFSLVHAV Trigger: GACAGCGTGTACCAAAGAAAATGGCGTCCGCGTGCAGGCCGTCTGCGCGCAGCAGTGGGAAGAGGCGGGCTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666982.1 |
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| CDS GCA 72 bp | TGTTGTCTCCTCAGGGAGCCCGCCTCTTCCCACTGCTaGGCGCAGACGGCCTGCACGCGGACGCCATTTTCT | + |
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Preference number: 6 (lower is better) Translates to: CCLLREPASSHC*AQTACTRTPFS Trigger: AGAAAATGGCGTCCGCGTGCAGGCCGTCTGCGCGCAGCAGTGGGAAGAGGCGGGCTCCCTGAGGAGACAACA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666982.1 |
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| CDS CAA 90 bp | AAGCGGCTGCCCTCTGGGTGTGCAGCCAGGCATCTGGTGGTGGGCTaGGTCAGCAGTGTCAGCAGTCAGGAAGACAAACTTTTCTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: KRLPSGCAARHLVVG*VSSVSSQEDKLFFS Trigger: AGAAAAGAAAAGTTTGTCTTCCTGACTGCTGACACTGCTGACCAAGCCCACCACCAGATGCCTGGCTGCACACCCAGAGGGCAGCCGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000656207.1 ENST00000659074.1 ENST00000660057.1 |
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| CDS CCA 72 bp | GCGCGCAGACGGCCTGCACGCGGACGCCATTTTCTTTaGTACACGCTGTCTCTGGGTAGAAAGGCTATTTTT | + |
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Preference number: 6 (lower is better) Translates to: ARRRPARGRHFL*YTLSLGRKAIF Trigger: AAAAATAGCCTTTCTACCCAGAGACAGCGTGTACCAAAGAAAATGGCGTCCGCGTGCAGGCCGTCTGCGCGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666982.1 |
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| CDS TCA 72 bp | ATGTGGTCTAGTAGATGTCAGAGAAGTCCACTGAAGTaGTGCAGGATGGGCTGCCGAGCAGGAAGCCACCTG | + |
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Preference number: 6 (lower is better) Translates to: MWSSRCQRSPLK*CRMGCRAGSHL Trigger: CAGGTGGCTTCCTGCTCGGCAGCCCATCCTGCATCACTTCAGTGGACTTCTCTGACATCTACTAGACCACAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000656207.1 ENST00000659074.1 ENST00000660057.1 ENST00000663896.1 ENST00000664555.1 ENST00000666982.1 ENST00000669246.1 |
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| CDS CCA 72 bp | CAGGAAGCCACCTGTTGTGGTGAGGGTGAAACTCTTTaGAGGGTTTGTGTCATCAGGTCTTCTGCATGCCCC | + |
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Preference number: 6 (lower is better) Translates to: QEATCCGEGETL*RVCVIRSSACP Trigger: GGGGCATGCAGAAGACCTGATGACACAAACCCTCCAAAGAGTTTCACCCTCACCACAACAGGTGGCTTCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000656207.1 ENST00000659074.1 ENST00000660057.1 ENST00000663896.1 ENST00000664555.1 ENST00000666982.1 ENST00000669246.1 |
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| CDS CAA 72 bp | ACAGTGACCCAGAGGTACCTCACCCCAGTTTCATCTTaGGTCCAGGGAATAGAACAGCCTAGGGCTCTTCAC | + |
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Preference number: 6 (lower is better) Translates to: TVTQRYLTPVSS*VQGIEQPRALH Trigger: GTGAAGAGCCCTAGGCTGTTCTATTCCCTGGACCAAAGATGAAACTGGGGTGAGGTACCTCTGGGTCACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664555.1 |
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| CDS CAA 90 bp | GTAGACTGGCGACTGATTTGGAGCAGTCATCAATTGTTAGTTCTCTaGCCTGGGTGGTGTGGGAGGATCCCCACTCAACTCAGTTCTAGG | + |
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Preference number: 6 (lower is better) Translates to: VDWRLIWSSHQLLVL*PGWCGRIPTQLSSR Trigger: CCTAGAACTGAGTTGAGTGGGGATCCTCCCACACCACCCAGGCAAGAGAACTAACAATTGATGACTGCTCCAAATCAGTCGCCAGTCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000663896.1 ENST00000669246.1 |
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| CDS CCA 72 bp | TGGAGCAGTCATCAATTGTTAGTTCTCTTGCCTGGGTaGTGTGGGAGGATCCCCACTCAACTCAGTTCTAGG | + |
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Preference number: 6 (lower is better) Translates to: WSSHQLLVLLPG*CGRIPTQLSSR Trigger: CCTAGAACTGAGTTGAGTGGGGATCCTCCCACACCACCCAGGCAAGAGAACTAACAATTGATGACTGCTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000663896.1 ENST00000669246.1 |
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| CDS CAA 72 bp | CGACTGATTTGGAGCAGTCATCAATTGTTAGTTCTCTaGCCTGGGTGGTGTGGGAGGATCCCCACTCAACTC | + |
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Preference number: 6 (lower is better) Translates to: RLIWSSHQLLVL*PGWCGRIPTQL Trigger: GAGTTGAGTGGGGATCCTCCCACACCACCCAGGCAAGAGAACTAACAATTGATGACTGCTCCAAATCAGTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000663896.1 ENST00000669246.1 |
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| CDS CCA 72 bp | GGAGGGTCAGAGATCCCATTAGTTCTTCTGAAGCACTaGTTCAGGTGGGCAATGCAGAGCTTGCAGAGAAAT | + |
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Preference number: 6 (lower is better) Translates to: GGSEIPLVLLKH*FRWAMQSLQRN Trigger: ATTTCTCTGCAAGCTCTGCATTGCCCACCTGAACCAGTGCTTCAGAAGAACTAATGGGATCTCTGACCCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000656207.1 ENST00000659074.1 ENST00000660057.1 |
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| CDS CCA 72 bp | GATTTGGAGCAGTCATCAATTGTTAGTTCTCTTGCCTaGGTGGTGTGGGAGGATCCCCACTCAACTCAGTTC | + |
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Preference number: 6 (lower is better) Translates to: DLEQSSIVSSLA*VVWEDPHSTQF Trigger: GAACTGAGTTGAGTGGGGATCCTCCCACACCACCCAGGCAAGAGAACTAACAATTGATGACTGCTCCAAATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000663896.1 ENST00000669246.1 |
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| CDS CAA 90 bp | TACTTCTTAACAGTGACCCAGAGGTACCTCACCCCAGTTTCATCTTaGGTCCAGGGAATAGAACAGCCTAGGGCTCTTCACCTTGTTCTG | + |
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Preference number: 6 (lower is better) Translates to: YFLTVTQRYLTPVSS*VQGIEQPRALHLVL Trigger: CAGAACAAGGTGAAGAGCCCTAGGCTGTTCTATTCCCTGGACCAAAGATGAAACTGGGGTGAGGTACCTCTGGGTCACTGTTAAGAAGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664555.1 |
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| CDS CAA 90 bp | CAGGCTACCTACCAGGTAGAAGTATTAGGTAGACTGGCGACTGATTaGGAGCAGTCATCAATTGTTAGTTCTCTTGCCTGGGTGGTGTGG | + |
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Preference number: 6 (lower is better) Translates to: QATYQVEVLGRLATD*EQSSIVSSLAWVVW Trigger: CCACACCACCCAGGCAAGAGAACTAACAATTGATGACTGCTCCAAATCAGTCGCCAGTCTACCTAATACTTCTACCTGGTAGGTAGCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663896.1 ENST00000669246.1 |
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| CDS GCA 72 bp | CGTCACAGTCTCAGCGTATTGAAATCTGACTGTTACTaGCTTCTCTCCCTTCTGTACCCAGCTTTCCATCTG | + |
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Preference number: 6 (lower is better) Translates to: RHSLSVLKSDCY*LLSLLYPAFHL Trigger: CAGATGGAAAGCTGGGTACAGAAGGGAGAGAAGGCAGTAACAGTCAGATTTCAATACGCTGAGACTGTGACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663896.1 ENST00000669246.1 |
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| CDS CAA 90 bp | CAGAGAAATCAGAAAAGACAAACTCATCCACTTGCTAAACATGCATaGCAAAAGGGAAGTTCTTCGAGAGGACCACGGGAAGCGGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: QRNQKRQTHPLAKHA*QKGSSSRGPREAAA Trigger: GGCAGCCGCTTCCCGTGGTCCTCTCGAAGAACTTCCCTTTTGCAATGCATGTTTAGCAAGTGGATGAGTTTGTCTTTTCTGATTTCTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000656207.1 ENST00000659074.1 ENST00000660057.1 |
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| CDS CAA 90 bp | GCAGATGTTACTCACTCAAAAGTCCCACGTCACAGTCTCAGCGTATaGAAATCTGACTGTTACTGCCTTCTCTCCCTTCTGTACCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: ADVTHSKVPRHSLSV*KSDCYCLLSLLYPA Trigger: AGCTGGGTACAGAAGGGAGAGAAGGCAGTAACAGTCAGATTTCAATACGCTGAGACTGTGACGTGGGACTTTTGAGTGAGTAACATCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000663896.1 ENST00000669246.1 |
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| CDS TCA 72 bp | CTCACTCAAAAGTCCCACGTCACAGTCTCAGCGTATTaGAATCTGACTGTTACTGCCTTCTCTCCCTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: LTQKSHVTVSAY*NLTVTAFSPFC Trigger: ACAGAAGGGAGAGAAGGCAGTAACAGTCAGATTTCAATACGCTGAGACTGTGACGTGGGACTTTTGAGTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000663896.1 ENST00000669246.1 |
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| CDS CAA 90 bp | CCAGGTATACAGCAGAAGAGGTTTGTGGATGTCATTTGCATCTCCTaGCTAAAGATAGGCAGCAAGTTCATATGCTGGCTCCTTGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: PGIQQKRFVDVICIS*LKIGSKFICWLLEG Trigger: TCCTTCAAGGAGCCAGCATATGAACTTGCTGCCTATCTTTAGCAAGGAGATGCAAATGACATCCACAAACCTCTTCTGCTGTATACCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000417989.1 ENST00000656207.1 ENST00000660057.1 ENST00000663896.1 ENST00000664555.1 ENST00000666982.1 |
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| CDS CAA 90 bp | CCAGGTATACAGCAGAAGAGGTTTGTGGATGTCATTTGCATCTCCTaGCTAAAGATAGGCAGCAAGTTCATATGCTGGCTCCTTCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: PGIQQKRFVDVICIS*LKIGSKFICWLLLF Trigger: GAAGAGAAGGAGCCAGCATATGAACTTGCTGCCTATCTTTAGCAAGGAGATGCAAATGACATCCACAAACCTCTTCTGCTGTATACCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659074.1 ENST00000669246.1 |
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| CDS CCA 72 bp | TCCTTCTCTCAGAATCTCCCTGACATAAGCTCCTCATaGTTCCTAACCCTTCAGGCTTATCACTTTGTCTCA | + |
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Preference number: 6 (lower is better) Translates to: SFSQNLPDISSS*FLTLQAYHFVS Trigger: TGAGACAAAGTGATAAGCCTGAAGGGTTAGGAACCATGAGGAGCTTATGTCAGGGAGATTCTGAGAGAAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664555.1 |
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| CDS CAA 90 bp | AAGGTAAGCATCTTTCCTTCTTACTCACAGGACACACAGCTAGCCTaGCTTTCATCCAGGTATACAGCAGAAGAGGTTTGTGGATGTCAT | + |
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Preference number: 6 (lower is better) Translates to: KVSIFPSYSQDTQLA*LSSRYTAEEVCGCH Trigger: ATGACATCCACAAACCTCTTCTGCTGTATACCTGGATGAAAGCAAGGCTAGCTGTGTGTCCTGTGAGTAAGAAGGAAAGATGCTTACCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664555.1 |
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| CDS GCA 72 bp | AGAAAAGACAAACTCATCCACTTGCTAAACATGCATTaGAAAAGGGAAGTTCTTCGAGAGGACCACGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: RKDKLIHLLNMH*KREVLREDHGK Trigger: CTTCCCGTGGTCCTCTCGAAGAACTTCCCTTTTGCAATGCATGTTTAGCAAGTGGATGAGTTTGTCTTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000656207.1 ENST00000659074.1 ENST00000660057.1 |
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| CDS CCA 72 bp | TTCTGTTCCTTGAATTCTCCAAGTATGCTCCTTCCTTaGGGCTGTACATTAGGTGTTCCACCTTTTTGGATC | + |
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Preference number: 6 (lower is better) Translates to: FCSLNSPSMLLP*GCTLGVPPFWI Trigger: GATCCAAAAAGGTGGAACACCTAATGTACAGCCCCAAGGAAGGAGCATACTTGGAGAATTCAAGGAACAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000663896.1 |
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| CDS CAA 72 bp | AGCAAAGGCACATCTTCGATGAGTACTATTTCCCTTTaGATGATATGCAGGCAACCCTGGAAGAAGTGGCAT | + |
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Preference number: 6 (lower is better) Translates to: SKGTSSMSTISL*MICRQPWKKWH Trigger: ATGCCACTTCTTCCAGGGTTGCCTGCATATCATCAAAAGGGAAATAGTACTCATCGAAGATGTGCCTTTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659074.1 ENST00000669246.1 |
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| CDS CAA 72 bp | CAGAAAAGACAAACTCATCCACTTGCTAAACATGCATaGCAAAAGGGAAGTTCTTCGAGAGGACCACGGGAA | + |
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Preference number: 6 (lower is better) Translates to: QKRQTHPLAKHA*QKGSSSRGPRE Trigger: TTCCCGTGGTCCTCTCGAAGAACTTCCCTTTTGCAATGCATGTTTAGCAAGTGGATGAGTTTGTCTTTTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000656207.1 ENST00000659074.1 ENST00000660057.1 |
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| CDS CAA 72 bp | TACCAGGTAGAAGTATTAGGTAGACTGGCGACTGATTaGGAGCAGTCATCAATTGTTAGTTCTCTTGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: YQVEVLGRLATD*EQSSIVSSLAW Trigger: CCAGGCAAGAGAACTAACAATTGATGACTGCTCCAAATCAGTCGCCAGTCTACCTAATACTTCTACCTGGTA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663896.1 ENST00000669246.1 |
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| CDS CAA 90 bp | TTGCTTTCATCCAGGTATACAGCAGAAGAGGTTTGTGGATGTCATTaGCATCTCCTTGCTAAAGATAGGCAGCAAGTTCATATGCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: LLSSRYTAEEVCGCH*HLLAKDRQQVHMLA Trigger: AGCCAGCATATGAACTTGCTGCCTATCTTTAGCAAGGAGATGCAAATGACATCCACAAACCTCTTCTGCTGTATACCTGGATGAAAGCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000417989.1 ENST00000656207.1 ENST00000659074.1 ENST00000660057.1 ENST00000663896.1 ENST00000664555.1 ENST00000666982.1 ENST00000669246.1 |
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| CDS CAA 90 bp | CTAGTTCCTAGCAAAGGCACATCTTCGATGAGTACTATTTCCCTTTaGATGATATGCAGGCAACCCTGGAAGAAGTGGCATTTTACACTG | + |
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Preference number: 6 (lower is better) Translates to: LVPSKGTSSMSTISL*MICRQPWKKWHFTL Trigger: CAGTGTAAAATGCCACTTCTTCCAGGGTTGCCTGCATATCATCAAAAGGGAAATAGTACTCATCGAAGATGTGCCTTTGCTAGGAACTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000659074.1 ENST00000669246.1 |
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| CDS CAA 90 bp | CAATGCAGAGCTTGCAGAGAAATCAGAAAAGACAAACTCATCCACTaGCTAAACATGCATTGCAAAAGGGAAGTTCTTCGAGAGGACCAC | + |
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Preference number: 6 (lower is better) Translates to: QCRACREIRKDKLIH*LNMHCKREVLREDH Trigger: GTGGTCCTCTCGAAGAACTTCCCTTTTGCAATGCATGTTTAGCAAGTGGATGAGTTTGTCTTTTCTGATTTCTCTGCAAGCTCTGCATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000656207.1 ENST00000659074.1 ENST00000660057.1 |
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| CDS CAA 90 bp | AAGTATGCTCCTTCCTTGGGGCTGTACATTAGGTGTTCCACCTTTTaGGATCACTTTCCCTCTTACTTCTTACAATCTTTCAGTCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: KYAPSLGLYIRCSTF*DHFPSYFLQSFSPW Trigger: CCAAGGACTGAAAGATTGTAAGAAGTAAGAGGGAAAGTGATCCAAAAAGGTGGAACACCTAATGTACAGCCCCAAGGAAGGAGCATACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663896.1 |
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| CDS CAA 72 bp | CCTTCCTTGGGGCTGTACATTAGGTGTTCCACCTTTTaGGATCACTTTCCCTCTTACTTCTTACAATCTTTC | + |
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Preference number: 6 (lower is better) Translates to: PSLGLYIRCSTF*DHFPSYFLQSF Trigger: GAAAGATTGTAAGAAGTAAGAGGGAAAGTGATCCAAAAAGGTGGAACACCTAATGTACAGCCCCAAGGAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000663896.1 |
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| CDS CAA 72 bp | TTTCTGTTCCTTGAATTCTCCAAGTATGCTCCTTCCTaGGGGCTGTACATTAGGTGTTCCACCTTTTTGGAT | + |
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Preference number: 6 (lower is better) Translates to: FLFLEFSKYAPS*GLYIRCSTFLD Trigger: ATCCAAAAAGGTGGAACACCTAATGTACAGCCCCAAGGAAGGAGCATACTTGGAGAATTCAAGGAACAGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000663896.1 |
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| CDS CAA 72 bp | ACTCTGCAAGGTCAATCCACACCTCTAAAGGGCTGTTaGCTTCTTGTGGTTTACCACATCTATCCATCTTAT | + |
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Preference number: 6 (lower is better) Translates to: TLQGQSTPLKGC*LLVVYHIYPSY Trigger: ATAAGATGGATAGATGTGGTAAACCACAAGAAGCAAACAGCCCTTTAGAGGTGTGGATTGACCTTGCAGAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000663896.1 ENST00000669246.1 |
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| CDS CCA 72 bp | TTCAGGCTTATCACTTTGTCTCATTGTCCTCTTGCCTaGTTTAGAGGTGGTAGCCTGATTTTGGAATTCTTA | + |
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Preference number: 6 (lower is better) Translates to: FRLITLSHCPLA*FRGGSLILEFL Trigger: TAAGAATTCCAAAATCAGGCTACCACCTCTAAACCAGGCAAGAGGACAATGAGACAAAGTGATAAGCCTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664555.1 |
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| CDS GCA 72 bp | CTAGAACGAATGTATAACAAACACCCGTGGTCTAACTaGTGTCTACTGATTTCTGATTCTTTTTCCCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: LERMYNKHPWSN*CLLISDSFSLC Trigger: ACAGAGGGAAAAAGAATCAGAAATCAGTAGACAGCAGTTAGACCACGGGTGTTTGTTATACATTCGTTCTAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000417989.1 |
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| CDS CCA 72 bp | GATGAATGTCTAGAACGAATGTATAACAAACACCCGTaGTCTAACTGCTGTCTACTGATTTCTGATTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: DECLERMYNKHP*SNCCLLISDSF Trigger: AAAAGAATCAGAAATCAGTAGACAGCAGTTAGACCACGGGTGTTTGTTATACATTCGTTCTAGACATTCATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000417989.1 |
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| CDS TCA 72 bp | AACTTTATTGATTTGGCACGCTTGACTTTCCCTTTCTaGGCTTTTGATGAATGTCTAGAACGAATGTATAAC | + |
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Preference number: 6 (lower is better) Translates to: NFIDLARLTFPF*AFDECLERMYN Trigger: GTTATACATTCGTTCTAGACATTCATCAAAAGCTCAGAAAGGGAAAGTCAAGCGTGCCAAATCAATAAAGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000417989.1 |
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